Wall clock time and date at job start Tue Mar 31 2020 05:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47354 * 97.94495 * 3 2 1 5 5 C 1.36937 * 119.99918 * 264.86422 * 4 3 2 6 6 H 1.07994 * 120.00238 * 200.97814 * 5 4 3 7 7 C 1.38819 * 119.99834 * 20.98491 * 5 4 3 8 8 N 1.31613 * 119.99861 * 10.76743 * 7 5 4 9 9 Si 1.86797 * 119.99845 * 190.76974 * 7 5 4 10 10 H 1.48499 * 109.47359 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46957 * 119.99819 * 9 7 5 12 12 H 1.48497 * 109.47361 * 239.99592 * 9 7 5 13 13 C 1.46502 * 120.00167 * 84.86377 * 4 3 2 14 14 C 1.50697 * 109.47277 * 85.56737 * 13 4 3 15 15 C 1.38262 * 119.99727 * 15.21974 * 14 13 4 16 16 C 1.38216 * 119.99402 * 179.72449 * 15 14 13 17 17 C 1.38252 * 120.00178 * 0.27862 * 16 15 14 18 18 C 1.38213 * 120.00313 * 359.97360 * 17 16 15 19 19 C 1.38212 * 120.00015 * 195.41047 * 14 13 4 20 20 C 1.50702 * 120.00210 * 0.04187 * 19 14 13 21 21 C 1.52994 * 109.47006 * 183.57647 * 20 19 14 22 22 C 1.52995 * 109.46982 * 303.57485 * 20 19 14 23 23 C 1.47204 * 109.47073 * 63.57524 * 20 19 14 24 24 N 4.42224 * 97.45841 * 173.26929 * 2 1 3 25 25 H 4.40636 * 5.51406 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47805 * 337.93591 * 3 2 1 27 27 H 1.08999 * 109.46804 * 217.94182 * 3 2 1 28 28 H 0.97008 * 119.99868 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46899 * 325.56289 * 13 4 3 30 30 H 1.09008 * 109.46887 * 205.56772 * 13 4 3 31 31 H 1.07997 * 120.00161 * 359.97438 * 15 14 13 32 32 H 1.08000 * 119.99595 * 180.25542 * 16 15 14 33 33 H 1.08006 * 119.99412 * 179.97438 * 17 16 15 34 34 H 1.07994 * 120.00113 * 179.97438 * 18 17 16 35 35 H 1.08997 * 109.47698 * 60.00059 * 21 20 19 36 36 H 1.09005 * 109.47071 * 180.02562 * 21 20 19 37 37 H 1.09005 * 109.47278 * 299.99799 * 21 20 19 38 38 H 1.09005 * 109.47181 * 71.05171 * 22 20 19 39 39 H 1.09001 * 109.47169 * 191.04504 * 22 20 19 40 40 H 1.08994 * 109.47541 * 311.04930 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.1918 -1.3679 5 6 3.4630 -0.8936 -2.1354 6 1 4.1221 -0.7760 -2.9828 7 6 2.9490 -2.1450 -1.8243 8 7 1.9876 -2.2584 -0.9327 9 14 3.6219 -3.6679 -2.6712 10 1 4.6905 -3.2732 -3.6239 11 1 4.1834 -4.5927 -1.6538 12 1 2.5274 -4.3488 -3.4084 13 6 3.2707 1.5440 -1.9148 14 6 4.6113 2.1109 -1.5242 15 6 5.6020 1.2746 -1.0438 16 6 6.8334 1.7938 -0.6910 17 6 7.0726 3.1500 -0.8130 18 6 6.0804 3.9867 -1.2883 19 6 4.8491 3.4672 -1.6425 20 6 3.7675 4.3795 -2.1612 21 6 4.3138 5.8039 -2.2769 22 6 3.3092 3.8956 -3.5384 23 6 2.6263 4.3656 -1.2315 24 7 1.7480 4.3546 -0.5139 25 1 -1.0500 0.0002 0.0001 26 1 3.0098 -0.9515 0.3860 27 1 3.0088 0.8113 0.6319 28 1 1.6282 -3.1328 -0.7155 29 1 2.4783 2.1783 -1.5175 30 1 3.1950 1.5058 -3.0015 31 1 5.4150 0.2153 -0.9481 32 1 7.6087 1.1400 -0.3196 33 1 8.0347 3.5556 -0.5369 34 1 6.2671 5.0461 -1.3832 35 1 5.1588 5.8142 -2.9653 36 1 3.5313 6.4638 -2.6517 37 1 4.6403 6.1487 -1.2957 38 1 2.7451 2.9693 -3.4289 39 1 2.6759 4.6544 -3.9979 40 1 4.1800 3.7182 -4.1695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281269105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:47 Heat of formation + Delta-G solvation = 142.744642 kcal Electronic energy + Delta-G solvation = -22143.946019 eV Core-core repulsion = 19119.777601 eV Total energy + Delta-G solvation = -3024.168418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.04124 -36.92878 -36.07698 -34.58643 -32.30353 -31.48307 -29.85328 -29.55230 -27.63111 -26.23925 -25.58603 -23.83207 -22.18028 -21.13299 -20.33048 -17.49113 -17.44641 -16.53909 -15.76265 -15.31938 -14.83077 -14.60458 -13.87970 -13.85340 -13.73058 -13.46352 -13.37794 -13.12594 -12.90770 -12.44250 -12.25247 -12.02388 -11.99636 -11.71569 -11.50202 -11.38638 -11.34888 -11.03960 -10.89815 -10.70968 -10.49174 -10.41491 -10.23906 -9.93860 -8.95657 -8.82487 -8.43850 -8.34541 -8.13781 -7.01227 -5.79124 -3.30544 1.64595 1.85394 3.02608 3.04245 3.33387 3.41110 3.42850 3.94251 4.19765 4.31492 4.45177 4.55053 4.71428 4.83251 4.96967 5.26733 5.31020 5.39550 5.47267 5.53513 5.63426 5.66148 5.76827 5.81215 5.88292 5.93034 5.97689 6.12510 6.19440 6.30181 6.36104 6.47638 6.58629 6.75410 6.82235 7.00500 7.21413 7.32846 7.47348 7.50693 7.70794 7.79976 8.27451 9.09547 9.27288 9.72396 10.19714 11.22663 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.006445 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.921496 B = 4343.703959 C = 5192.297063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.087 4.087 3 C 0.271 3.729 4 N -0.584 5.584 5 C -0.265 4.265 6 H 0.076 0.924 7 C 0.005 3.995 8 N -0.893 5.893 9 Si 0.905 3.095 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.291 1.291 13 C 0.168 3.832 14 C -0.076 4.076 15 C -0.089 4.089 16 C -0.123 4.123 17 C -0.136 4.136 18 C -0.118 4.118 19 C -0.096 4.096 20 C 0.082 3.918 21 C -0.140 4.140 22 C -0.156 4.156 23 C 0.216 3.784 24 N -0.427 5.427 25 H 0.188 0.812 26 H 0.102 0.898 27 H 0.028 0.972 28 H 0.255 0.745 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.694 12.949 -2.955 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.090 4.090 3 C 0.146 3.854 4 N -0.303 5.303 5 C -0.394 4.394 6 H 0.094 0.906 7 C -0.194 4.194 8 N -0.536 5.536 9 Si 0.735 3.265 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.218 1.218 13 C 0.041 3.959 14 C -0.078 4.078 15 C -0.107 4.107 16 C -0.141 4.141 17 C -0.155 4.155 18 C -0.136 4.136 19 C -0.098 4.098 20 C 0.078 3.922 21 C -0.198 4.198 22 C -0.214 4.214 23 C -0.102 4.102 24 N -0.101 5.101 25 H 0.206 0.794 26 H 0.120 0.880 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.165 0.835 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.287 12.750 -1.822 14.799 hybrid contribution 0.264 -1.051 -0.684 1.282 sum 7.552 11.699 -2.507 14.148 Atomic orbital electron populations 1.24134 0.95331 1.08473 1.04800 1.24202 0.95247 0.93555 0.96030 1.17796 0.82828 0.99541 0.85214 1.43988 1.75003 1.00378 1.10927 1.19276 1.23280 0.86024 1.10827 0.90576 1.25062 0.96640 0.98509 0.99191 1.70030 1.25952 1.22661 1.34996 0.86177 0.78211 0.83251 0.78837 1.20236 1.21572 1.21784 1.20209 0.90679 0.87243 0.97803 1.21109 0.98718 0.91929 0.96091 1.21455 0.91484 1.01946 0.95839 1.21256 0.97462 0.95133 1.00222 1.20982 0.98786 0.93955 1.01737 1.20939 0.92911 0.99474 1.00266 1.19245 0.94044 0.93132 1.03351 1.17014 0.86690 0.96755 0.91713 1.21954 1.01872 0.92947 1.03064 1.22249 1.02897 1.03197 0.93063 1.28812 0.94113 0.93148 0.94113 1.81147 1.11121 1.08241 1.09603 0.79446 0.88030 0.95383 0.93439 0.93176 0.90640 0.83542 0.86692 0.86828 0.86033 0.90200 0.91633 0.91549 0.89831 0.91639 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.56 19.25 29.55 0.57 -6.99 16 2 C -0.09 -2.25 11.45 -37.13 -0.43 -2.68 16 3 C 0.27 6.62 5.43 -6.83 -0.04 6.58 16 4 N -0.58 -13.79 1.43 -177.95 -0.25 -14.04 16 5 C -0.27 -6.73 8.58 -15.06 -0.13 -6.86 16 6 H 0.08 1.89 7.85 -52.49 -0.41 1.47 16 7 C 0.01 0.13 5.11 -17.43 -0.09 0.04 16 8 N -0.89 -24.96 8.97 55.49 0.50 -24.46 16 9 Si 0.91 20.97 29.57 -169.99 -5.03 15.95 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.17 3.35 4.01 -5.19 -0.02 3.33 16 14 C -0.08 -1.31 5.63 -104.62 -0.59 -1.90 16 15 C -0.09 -1.56 9.27 -39.58 -0.37 -1.93 16 16 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 17 C -0.14 -1.73 10.05 -39.59 -0.40 -2.13 16 18 C -0.12 -1.46 8.98 -39.58 -0.36 -1.81 16 19 C -0.10 -1.37 4.70 -104.62 -0.49 -1.86 16 20 C 0.08 1.02 0.70 -158.45 -0.11 0.90 16 21 C -0.14 -1.23 7.07 37.15 0.26 -0.97 16 22 C -0.16 -1.78 7.88 37.16 0.29 -1.49 16 23 C 0.22 3.44 11.23 -20.82 -0.23 3.20 16 24 N -0.43 -8.00 18.42 42.08 0.78 -7.23 16 25 H 0.19 3.93 7.80 -54.09 -0.42 3.51 16 26 H 0.10 2.66 6.40 -51.93 -0.33 2.33 16 27 H 0.03 0.65 8.11 -51.93 -0.42 0.23 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.05 1.05 5.23 -51.93 -0.27 0.77 16 30 H 0.08 1.47 6.07 -51.92 -0.32 1.15 16 31 H 0.15 2.91 6.25 -52.49 -0.33 2.59 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.12 1.15 5.90 -52.49 -0.31 0.84 16 35 H 0.08 0.56 7.67 -51.93 -0.40 0.16 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.57 7.35 -51.93 -0.38 0.18 16 38 H 0.08 1.15 4.49 -51.93 -0.23 0.92 16 39 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 40 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -30.42 331.00 -6.61 -37.03 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.07 Total: 4.51 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.52 Total: -16.73 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 1.02 Total: -45.74 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.42 -6.61 -37.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281269105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.772 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds