Wall clock time and date at job start Tue Mar 31 2020 07:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47350 * 2 1 4 4 C 1.53006 * 109.47460 * 120.00304 * 2 1 3 5 5 C 1.52996 * 109.47061 * 64.99603 * 4 2 1 6 6 N 1.46899 * 109.47222 * 180.02562 * 5 4 2 7 7 C 1.46897 * 111.00068 * 66.04294 * 6 5 4 8 8 C 1.50702 * 109.47593 * 199.68375 * 7 6 5 9 9 H 1.08001 * 119.99637 * 355.81659 * 8 7 6 10 10 C 1.37872 * 120.00317 * 175.81751 * 8 7 6 11 11 N 1.31521 * 119.99800 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00021 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47345 * 89.99872 * 12 10 8 14 14 H 1.48501 * 109.47088 * 209.99916 * 12 10 8 15 15 H 1.48502 * 109.46769 * 329.99817 * 12 10 8 16 16 C 1.46898 * 111.00498 * 190.00199 * 6 5 4 17 17 C 1.53003 * 109.47014 * 76.08095 * 16 6 5 18 18 C 1.50697 * 109.46864 * 181.90057 * 17 16 6 19 19 C 1.33641 * 122.75112 * 124.73259 * 18 17 16 20 20 S 1.76198 * 107.92921 * 179.97438 * 19 18 17 21 21 C 1.70978 * 90.27789 * 0.27422 * 20 19 18 22 22 N 1.29022 * 110.17263 * 359.84372 * 21 20 19 23 23 H 1.09001 * 109.46743 * 299.99590 * 1 2 3 24 24 H 1.08993 * 109.47397 * 59.99919 * 1 2 3 25 25 H 1.09005 * 109.47035 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46601 * 239.99923 * 2 1 3 27 27 H 1.08996 * 109.46995 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46732 * 300.00196 * 3 2 1 29 29 H 1.08994 * 109.46954 * 60.00108 * 3 2 1 30 30 H 1.09000 * 109.46429 * 304.99692 * 4 2 1 31 31 H 1.08993 * 109.46889 * 184.99929 * 4 2 1 32 32 H 1.09007 * 109.47352 * 60.00311 * 5 4 2 33 33 H 1.09005 * 109.47437 * 300.00321 * 5 4 2 34 34 H 1.09000 * 109.47472 * 319.68137 * 7 6 5 35 35 H 1.08998 * 109.47053 * 79.68336 * 7 6 5 36 36 H 0.97005 * 119.99397 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.47275 * 196.08426 * 16 6 5 38 38 H 1.08999 * 109.46883 * 316.08450 * 16 6 5 39 39 H 1.08997 * 109.47204 * 301.90422 * 17 16 6 40 40 H 1.09002 * 109.46897 * 61.90556 * 17 16 6 41 41 H 1.08012 * 126.03365 * 0.04117 * 19 18 17 42 42 H 1.08002 * 124.91226 * 179.83338 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 7 2.1245 -2.8879 2.3876 7 6 1.4506 -2.3903 3.5943 8 6 2.2732 -2.7372 4.8084 9 1 3.1685 -3.3319 4.7021 10 6 1.8829 -2.2956 6.0548 11 7 2.6006 -2.5988 7.1144 12 14 0.3340 -1.2677 6.2387 13 1 -0.8297 -2.1620 6.4649 14 1 0.4842 -0.3487 7.3954 15 1 0.1161 -0.4752 5.0018 16 6 1.9654 -4.3425 2.2577 17 6 3.0473 -4.8927 1.3261 18 6 2.8558 -6.3777 1.1558 19 6 2.7249 -6.9572 -0.0413 20 16 2.5248 -8.6892 0.2135 21 6 2.6289 -8.4608 1.9048 22 7 2.7971 -7.2106 2.1754 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6055 -0.2618 2.1369 31 1 3.1264 -0.6444 1.2950 32 1 2.0699 -2.6551 0.3001 33 1 0.5490 -2.2724 1.1420 34 1 1.3392 -1.3080 3.5281 35 1 0.4669 -2.8524 3.6777 36 1 2.3261 -2.2878 7.9912 37 1 2.0600 -4.8074 3.2389 38 1 0.9820 -4.5648 1.8436 39 1 2.9739 -4.4031 0.3550 40 1 4.0299 -4.7001 1.7568 41 1 2.7403 -6.4530 -0.9964 42 1 2.5631 -9.2491 2.6401 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283981503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:18 Heat of formation + Delta-G solvation = 31.868652 kcal Electronic energy + Delta-G solvation = -20066.948855 eV Core-core repulsion = 17173.416445 eV Total energy + Delta-G solvation = -2893.532410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.79673 -37.73307 -35.55224 -32.70121 -31.94843 -29.35343 -28.79722 -27.05417 -26.48967 -24.79660 -22.84628 -22.29669 -20.00691 -19.45389 -19.37611 -17.79348 -16.80134 -15.81124 -15.15570 -15.01357 -14.70338 -14.26432 -14.12029 -13.70145 -13.37862 -13.24459 -13.04396 -12.87296 -12.65934 -12.17961 -12.13120 -12.00874 -11.48207 -11.46013 -11.20573 -11.10697 -10.73252 -10.57643 -10.46106 -10.33614 -10.19064 -9.74963 -9.73595 -9.48661 -9.43255 -9.18500 -8.72976 -8.49243 -7.31797 -5.97119 -3.92821 0.76864 1.43060 1.74864 2.92736 3.31953 3.39365 3.40540 4.31459 4.47754 4.65728 5.05503 5.13453 5.13800 5.21463 5.26383 5.34654 5.45084 5.59575 5.69993 5.73492 5.80549 5.87421 5.92022 5.93269 5.99973 6.01015 6.12572 6.21710 6.25342 6.34710 6.38566 6.56693 6.63008 6.76114 6.79072 6.98186 7.00258 7.72174 7.85309 7.98924 8.11752 8.75139 9.14749 9.65014 11.16415 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.005285 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.272373 B = 5296.576718 C = 7434.492923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.113 4.113 5 C 0.053 3.947 6 N -0.527 5.527 7 C 0.159 3.841 8 C -0.501 4.501 9 H 0.081 0.919 10 C 0.067 3.933 11 N -0.901 5.901 12 Si 0.871 3.129 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.267 1.267 16 C 0.072 3.928 17 C -0.041 4.041 18 C 0.083 3.917 19 C -0.261 4.261 20 S 0.083 5.917 21 C 0.029 3.971 22 N -0.454 5.454 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.034 0.966 35 H -0.019 1.019 36 H 0.262 0.738 37 H 0.095 0.905 38 H 0.016 0.984 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.175 0.825 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -5.196 -17.602 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.150 4.150 5 C -0.075 4.075 6 N -0.250 5.250 7 C 0.033 3.967 8 C -0.539 4.539 9 H 0.099 0.901 10 C -0.133 4.133 11 N -0.541 5.541 12 Si 0.698 3.302 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.192 1.192 16 C -0.056 4.056 17 C -0.081 4.081 18 C -0.049 4.049 19 C -0.399 4.399 20 S 0.335 5.665 21 C -0.270 4.270 22 N -0.167 5.167 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.052 0.948 35 H -0.001 1.001 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.035 0.965 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.192 0.808 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.665 -5.788 -17.407 18.419 hybrid contribution -1.634 1.127 0.305 2.009 sum -3.300 -4.661 -17.102 18.030 Atomic orbital electron populations 1.21899 0.95801 1.01715 1.01196 1.21105 0.95520 0.96068 0.98757 1.21821 1.00988 0.96187 1.01280 1.21682 1.01725 0.94607 0.97029 1.22160 0.96724 0.94640 0.93987 1.61903 1.58130 1.02759 1.02240 1.20260 0.92443 0.95517 0.88432 1.21061 1.10818 1.33090 0.88948 0.90075 1.24885 0.96502 0.96060 0.95903 1.69905 1.38946 1.46562 0.98677 0.86934 0.84376 0.80956 0.77902 1.20465 1.21217 1.19208 1.21877 0.94145 0.88990 1.00617 1.20263 1.01986 0.85227 1.00648 1.20579 0.99626 0.98126 0.86585 1.26813 1.14309 0.95649 1.03160 1.83875 1.68100 1.07446 1.07125 1.28496 1.03631 0.97088 0.97811 1.66173 1.14259 1.01554 1.34699 0.92782 0.93344 0.92587 0.91656 0.92676 0.93271 0.92720 0.91413 0.91140 0.92133 0.95984 0.94843 1.00099 0.92822 0.88692 0.96545 0.90942 0.89131 0.80790 0.78509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 37.16 0.33 -1.49 16 2 C -0.10 -1.21 2.92 -90.62 -0.26 -1.47 16 3 C -0.15 -1.68 9.19 37.16 0.34 -1.34 16 4 C -0.11 -1.80 4.65 -26.73 -0.12 -1.92 16 5 C 0.05 0.90 4.54 -3.83 -0.02 0.88 16 6 N -0.53 -10.95 4.35 -236.07 -1.03 -11.98 16 7 C 0.16 3.91 3.68 -4.98 -0.02 3.89 16 8 C -0.50 -14.47 9.08 -34.44 -0.31 -14.78 16 9 H 0.08 2.58 8.02 -52.49 -0.42 2.16 16 10 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 12 Si 0.87 21.88 27.55 -169.99 -4.68 17.19 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.27 -6.42 6.42 56.52 0.36 -6.05 16 16 C 0.07 1.41 4.70 -3.82 -0.02 1.39 16 17 C -0.04 -0.66 5.85 -27.88 -0.16 -0.82 16 18 C 0.08 1.25 6.08 -84.22 -0.51 0.74 16 19 C -0.26 -3.15 11.07 29.12 0.32 -2.83 16 20 S 0.08 0.85 23.22 -107.50 -2.50 -1.64 16 21 C 0.03 0.35 12.23 51.58 0.63 0.99 16 22 N -0.45 -7.39 10.38 -11.90 -0.12 -7.51 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.23 6.25 -51.93 -0.32 0.90 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.90 6.63 -51.93 -0.34 0.55 16 33 H 0.02 0.37 6.54 -51.93 -0.34 0.04 16 34 H 0.03 0.82 4.64 -51.93 -0.24 0.58 16 35 H -0.02 -0.47 7.64 -51.93 -0.40 -0.86 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 37 H 0.09 2.19 7.24 -51.93 -0.38 1.82 16 38 H 0.02 0.31 7.99 -51.93 -0.42 -0.10 16 39 H 0.07 0.99 6.64 -51.93 -0.34 0.65 16 40 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.20 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -31.99 346.22 -9.19 -41.17 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.95 Total: -0.21 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 0.10 Total: -14.87 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.38 Total: -46.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.68 Total: 17.19 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.50 Total: -1.64 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.99 -9.19 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283981503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.042 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds