Wall clock time and date at job start Tue Mar 31 2020 05:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35723 * 116.99512 * 2 1 4 4 C 1.38900 * 119.65225 * 180.27558 * 3 2 1 5 5 C 1.38385 * 119.13444 * 180.22850 * 4 3 2 6 6 C 1.50701 * 120.76457 * 179.77788 * 5 4 3 7 7 H 1.09002 * 109.47060 * 219.71867 * 6 5 4 8 8 C 1.52997 * 109.47212 * 99.71812 * 6 5 4 9 9 N 1.46896 * 109.47239 * 339.72021 * 6 5 4 10 10 C 1.46901 * 110.99913 * 205.00362 * 9 6 5 11 11 C 1.53002 * 109.47317 * 180.02562 * 10 9 6 12 12 C 1.52991 * 109.47310 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47479 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99696 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00420 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99971 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00101 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46943 * 90.00041 * 17 15 13 19 19 H 1.48504 * 109.47149 * 210.00169 * 17 15 13 20 20 H 1.48501 * 109.47147 * 330.00280 * 17 15 13 21 21 C 1.38997 * 118.46625 * 359.50073 * 5 4 3 22 22 F 1.35100 * 120.38084 * 180.27146 * 21 5 4 23 23 C 1.38253 * 119.23706 * 0.25703 * 21 5 4 24 24 N 1.31978 * 120.80116 * 359.97438 * 23 21 5 25 25 H 1.09000 * 109.47143 * 60.00032 * 1 2 3 26 26 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47162 * 300.00110 * 1 2 3 28 28 H 1.07999 * 120.43241 * 359.97438 * 4 3 2 29 29 H 1.08998 * 109.47533 * 59.99628 * 8 6 5 30 30 H 1.08996 * 109.47853 * 179.97438 * 8 6 5 31 31 H 1.09002 * 109.47153 * 299.99998 * 8 6 5 32 32 H 1.00896 * 111.00728 * 81.04506 * 9 6 5 33 33 H 1.09007 * 109.47248 * 299.99411 * 10 9 6 34 34 H 1.08990 * 109.47767 * 59.99672 * 10 9 6 35 35 H 1.09010 * 109.46876 * 299.99637 * 11 10 9 36 36 H 1.09000 * 109.47585 * 59.99024 * 11 10 9 37 37 H 1.08998 * 109.47265 * 299.99539 * 12 11 10 38 38 H 1.09000 * 109.47802 * 59.99535 * 12 11 10 39 39 H 0.96999 * 119.99973 * 179.97438 * 16 15 13 40 40 H 1.08003 * 119.59694 * 180.02562 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4326 1.2738 -0.0058 5 6 4.0496 2.5124 -0.0009 6 6 5.5524 2.6251 -0.0019 7 1 5.8563 3.4376 0.6581 8 6 6.0414 2.9123 -1.4229 9 7 6.1383 1.3641 0.4719 10 6 7.4731 1.5859 1.0437 11 6 8.0500 0.2529 1.5246 12 6 9.4405 0.4838 2.1195 13 6 10.0084 -0.8290 2.5937 14 1 9.4347 -1.7373 2.4823 15 6 11.2604 -0.8708 3.1698 16 7 11.9591 0.2351 3.3051 17 14 11.9640 -2.4981 3.7582 18 1 12.7235 -3.1372 2.6538 19 1 12.8715 -2.2579 4.9089 20 1 10.8563 -3.3928 4.1798 21 6 3.2513 3.6503 -0.0010 22 9 3.8129 4.8790 -0.0018 23 6 1.8759 3.5101 -0.0005 24 7 1.3185 2.3138 -0.0004 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 4.0222 0.3689 -0.0099 29 1 5.6067 3.8479 -1.7747 30 1 7.1283 2.9942 -1.4237 31 1 5.7375 2.0998 -2.0829 32 1 6.1714 0.6798 -0.2688 33 1 8.1280 2.0115 0.2833 34 1 7.3982 2.2744 1.8853 35 1 7.3953 -0.1732 2.2849 36 1 8.1251 -0.4354 0.6827 37 1 10.0949 0.9096 1.3590 38 1 9.3658 1.1722 2.9613 39 1 12.8398 0.2058 3.7107 40 1 1.2500 4.3903 -0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287813882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:38 Heat of formation + Delta-G solvation = -60.758962 kcal Electronic energy + Delta-G solvation = -21446.280965 eV Core-core repulsion = 17982.518744 eV Total energy + Delta-G solvation = -3463.762221 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.05684 -40.84968 -38.39896 -37.15624 -34.30347 -32.68283 -31.21008 -30.53302 -29.07827 -27.46229 -26.00322 -24.59742 -23.54237 -22.34505 -21.15977 -20.16660 -18.27019 -17.80017 -17.64084 -16.40947 -16.28807 -15.69129 -15.33663 -15.28158 -14.86106 -14.56930 -14.37859 -14.21440 -13.79256 -13.46755 -13.26330 -12.95411 -12.81691 -12.28795 -12.19077 -12.12889 -11.67279 -11.45239 -11.40570 -11.32975 -10.86202 -10.60686 -10.51951 -9.97066 -9.82571 -9.70782 -9.34508 -9.06167 -8.59837 -8.34624 -8.32374 -5.99177 -4.01280 0.78343 0.85199 2.82129 3.32805 3.36405 3.39020 3.42864 3.83306 3.95587 4.13110 4.45784 4.52034 4.66422 4.92458 4.96659 5.01726 5.05152 5.06172 5.31436 5.36766 5.36850 5.42189 5.58198 5.65891 5.78730 5.82848 5.93915 5.98403 6.15908 6.28111 6.68214 6.71231 6.95242 7.11388 7.20634 7.46322 7.48123 7.68566 7.82963 8.01073 8.44139 9.05957 9.62832 11.12295 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.003059 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.613181 B = 9149.952022 C =10133.646837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.303 6.303 3 C 0.309 3.691 4 C -0.137 4.137 5 C -0.021 4.021 6 C 0.120 3.880 7 H 0.098 0.902 8 C -0.177 4.177 9 N -0.683 5.683 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.010 3.990 22 F -0.130 7.130 23 C 0.111 3.889 24 N -0.522 5.522 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.159 0.841 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.342 0.658 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.805 6.019 -9.970 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.209 6.209 3 C 0.130 3.870 4 C -0.157 4.157 5 C -0.030 4.030 6 C 0.009 3.991 7 H 0.116 0.884 8 C -0.236 4.236 9 N -0.314 5.314 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.013 4.013 22 F -0.109 7.109 23 C -0.046 4.046 24 N -0.246 5.246 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.176 0.824 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.160 0.840 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -22.732 5.782 -9.279 25.225 hybrid contribution 1.692 -0.226 -0.397 1.752 sum -21.040 5.556 -9.676 23.816 Atomic orbital electron populations 1.22877 0.77197 1.03083 1.02393 1.86287 1.22877 1.24017 1.87761 1.19886 0.89441 0.84634 0.93011 1.20870 0.91250 0.99322 1.04282 1.20257 0.96826 0.91083 0.94846 1.20367 0.88019 0.94550 0.96172 0.88365 1.22448 1.02370 1.02528 0.96216 1.60626 1.25148 1.08314 1.37283 1.22189 0.86317 1.00230 0.98117 1.21630 0.99175 0.93830 0.99880 1.19058 0.89654 0.97087 0.95738 1.21255 1.01257 0.94068 1.39157 0.92650 1.25030 0.97140 0.96330 0.96025 1.69963 1.12167 1.26699 1.44791 0.86597 0.79002 0.84071 0.78355 1.20704 1.21245 1.19826 1.18387 0.92442 0.80530 1.09931 1.91498 1.85403 1.39686 1.94316 1.22348 0.90699 0.94962 0.96573 1.67303 1.40105 0.98103 1.19070 0.92341 0.88514 0.92249 0.82375 0.91808 0.91163 0.92007 0.83984 0.95268 0.91271 0.92456 0.93543 0.96794 0.96571 0.93031 0.81425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.36 16 2 O -0.30 -3.43 10.48 -18.88 -0.20 -3.63 16 3 C 0.31 3.70 7.49 -17.14 -0.13 3.57 16 4 C -0.14 -1.62 9.33 -39.28 -0.37 -1.99 16 5 C -0.02 -0.25 5.12 -104.29 -0.53 -0.78 16 6 C 0.12 1.43 2.58 -68.87 -0.18 1.25 16 7 H 0.10 1.25 7.67 -51.93 -0.40 0.85 16 8 C -0.18 -1.84 9.14 37.16 0.34 -1.50 16 9 N -0.68 -9.26 5.14 -107.95 -0.56 -9.81 16 10 C 0.06 0.98 5.48 -3.82 -0.02 0.96 16 11 C -0.11 -2.16 5.41 -26.73 -0.14 -2.31 16 12 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 13 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 17 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 C 0.01 0.11 7.29 -39.29 -0.29 -0.18 16 22 F -0.13 -1.48 16.79 2.25 0.04 -1.44 16 23 C 0.11 1.12 11.16 -17.48 -0.20 0.93 16 24 N -0.52 -5.95 9.21 -13.28 -0.12 -6.07 16 25 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.16 1.83 6.98 -52.49 -0.37 1.46 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.75 7.45 -51.93 -0.39 0.37 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.34 4.23 8.07 -39.29 -0.32 3.92 16 33 H 0.03 0.47 7.44 -51.93 -0.39 0.08 16 34 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 35 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -31.02 341.67 -7.03 -38.05 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.04 Total: -0.82 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.01 Total: -11.82 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.06 Total: -42.24 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.20 Total: -3.63 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.02 -7.03 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287813882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.711 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds