Wall clock time and date at job start Tue Mar 31 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35719 * 116.99796 * 2 1 4 4 C 1.38892 * 119.65841 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.14066 * 179.97438 * 4 3 2 6 6 C 1.50708 * 120.76995 * 180.02562 * 5 4 3 7 7 H 1.08992 * 109.47068 * 144.99797 * 6 5 4 8 8 C 1.52998 * 109.46843 * 264.99895 * 6 5 4 9 9 N 1.46906 * 109.46635 * 24.99800 * 6 5 4 10 10 C 1.46900 * 110.99517 * 155.00311 * 9 6 5 11 11 C 1.52999 * 109.47005 * 179.97438 * 10 9 6 12 12 C 1.52996 * 109.47287 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47255 * 180.02562 * 12 11 10 14 14 H 1.07992 * 119.99782 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99993 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00067 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00175 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46938 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47223 * 119.99320 * 17 15 13 20 20 H 1.48491 * 109.47620 * 239.99894 * 17 15 13 21 21 C 1.39000 * 118.46631 * 359.72997 * 5 4 3 22 22 F 1.35100 * 120.38183 * 180.26417 * 21 5 4 23 23 C 1.38250 * 119.23742 * 0.53451 * 21 5 4 24 24 N 1.31986 * 120.79725 * 359.45306 * 23 21 5 25 25 H 1.08995 * 109.47319 * 59.99493 * 1 2 3 26 26 H 1.09003 * 109.46785 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46734 * 299.99631 * 1 2 3 28 28 H 1.08001 * 120.42911 * 359.95426 * 4 3 2 29 29 H 1.08999 * 109.47063 * 59.99839 * 8 6 5 30 30 H 1.09007 * 109.46942 * 179.97438 * 8 6 5 31 31 H 1.09000 * 109.47359 * 299.99803 * 8 6 5 32 32 H 1.00898 * 110.99775 * 278.95390 * 9 6 5 33 33 H 1.09000 * 109.47188 * 299.99793 * 10 9 6 34 34 H 1.09004 * 109.47344 * 59.99526 * 10 9 6 35 35 H 1.09000 * 109.47141 * 300.00021 * 11 10 9 36 36 H 1.08997 * 109.47327 * 60.00102 * 11 10 9 37 37 H 1.09000 * 109.47196 * 300.00170 * 12 11 10 38 38 H 1.09005 * 109.47246 * 60.00248 * 12 11 10 39 39 H 0.97003 * 119.99899 * 180.02562 * 16 15 13 40 40 H 1.08002 * 119.60426 * 179.73453 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0496 2.5123 -0.0011 6 6 5.5524 2.6251 -0.0022 7 1 5.8513 3.4916 -0.5920 8 6 6.0527 2.7887 1.4344 9 7 6.1341 1.4098 -0.5880 10 6 7.4645 1.6807 -1.1489 11 6 8.0370 0.3944 -1.7477 12 6 9.4223 0.6766 -2.3325 13 6 9.9860 -0.5903 -2.9229 14 1 9.4135 -1.5052 -2.8844 15 6 11.2329 -0.5814 -3.5112 16 7 11.9302 0.5327 -3.5577 17 14 11.9319 -2.1518 -4.2424 18 1 10.9572 -3.2578 -4.0632 19 1 12.1910 -1.9509 -5.6907 20 1 13.2026 -2.4951 -3.5551 21 6 3.2513 3.6502 -0.0068 22 9 3.8129 4.8789 -0.0129 23 6 1.8759 3.5102 -0.0005 24 7 1.3184 2.3138 0.0000 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0222 0.3689 -0.0002 29 1 5.7537 1.9221 2.0241 30 1 7.1397 2.8698 1.4336 31 1 5.6210 3.6903 1.8690 32 1 6.1728 0.6642 0.0907 33 1 7.3830 2.4394 -1.9273 34 1 8.1254 2.0393 -0.3598 35 1 8.1185 -0.3640 -0.9691 36 1 7.3762 0.0354 -2.5368 37 1 9.3404 1.4348 -3.1113 38 1 10.0834 1.0358 -1.5438 39 1 12.8073 0.5390 -3.9719 40 1 1.2500 4.3903 -0.0006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287813888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:43 Heat of formation + Delta-G solvation = -61.041929 kcal Electronic energy + Delta-G solvation = -21441.444096 eV Core-core repulsion = 17977.669605 eV Total energy + Delta-G solvation = -3463.774491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.05555 -40.85483 -38.40232 -37.15699 -34.30576 -32.68642 -31.20715 -30.53391 -29.07972 -27.46286 -26.00132 -24.63199 -23.53787 -22.34883 -21.14995 -20.16666 -18.26209 -17.82365 -17.64823 -16.41177 -16.29035 -15.69394 -15.33587 -15.26965 -14.87822 -14.57340 -14.37585 -14.20582 -13.79761 -13.47668 -13.26677 -12.97172 -12.81827 -12.28981 -12.19733 -12.13618 -11.66665 -11.43856 -11.40862 -11.33184 -10.87439 -10.61015 -10.50019 -9.97721 -9.84089 -9.71198 -9.34453 -9.04816 -8.60197 -8.34812 -8.32170 -5.99352 -4.01355 0.77926 0.84765 2.81482 3.31846 3.35837 3.39307 3.43782 3.83613 3.95150 4.13061 4.45777 4.52242 4.65338 4.91210 4.97063 5.01164 5.05096 5.05838 5.30899 5.36377 5.36699 5.40953 5.57940 5.64929 5.78720 5.81990 5.92802 5.98134 6.15399 6.28173 6.68233 6.71293 6.94568 7.11452 7.20716 7.45797 7.48295 7.68800 7.82937 8.01025 8.44126 9.06134 9.62806 11.12136 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021597 B = 0.003049 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.194674 B = 9179.922919 C =10119.915507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.303 6.303 3 C 0.309 3.691 4 C -0.137 4.137 5 C -0.020 4.020 6 C 0.119 3.881 7 H 0.098 0.902 8 C -0.176 4.176 9 N -0.683 5.683 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.010 3.990 22 F -0.130 7.130 23 C 0.111 3.889 24 N -0.522 5.522 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.157 0.843 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.341 0.659 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.748 5.141 10.776 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.131 3.869 4 C -0.158 4.158 5 C -0.029 4.029 6 C 0.008 3.992 7 H 0.116 0.884 8 C -0.235 4.235 9 N -0.313 5.313 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.012 4.012 22 F -0.109 7.109 23 C -0.046 4.046 24 N -0.246 5.246 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.174 0.826 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -22.682 4.959 10.101 25.320 hybrid contribution 1.701 -0.254 0.316 1.749 sum -20.981 4.705 10.417 23.893 Atomic orbital electron populations 1.22879 0.77180 1.03083 1.02405 1.86283 1.22893 1.24023 1.87767 1.19870 0.89417 0.84646 0.93010 1.20827 0.91292 0.99201 1.04445 1.20247 0.96833 0.91082 0.94734 1.20381 0.87993 0.95542 0.95250 0.88386 1.22449 1.02326 1.02655 0.96101 1.60642 1.25583 1.06570 1.38536 1.22190 0.86395 1.00317 0.97955 1.21628 0.99203 0.94262 0.99415 1.19067 0.89715 0.97062 0.95732 1.21292 1.01624 0.95778 1.36956 0.92593 1.25034 0.97125 0.96167 0.96240 1.69978 1.12433 1.26197 1.45005 0.86540 0.78959 0.83678 0.78863 1.19700 1.21023 1.21061 1.18388 0.92437 0.80544 1.09859 1.91500 1.85399 1.39673 1.94314 1.22355 0.90704 0.94965 0.96526 1.67312 1.40083 0.98098 1.19063 0.92230 0.88513 0.92341 0.82578 0.91983 0.91157 0.91854 0.84010 0.91273 0.95270 0.93540 0.92464 0.96565 0.96785 0.93091 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.30 -3.41 10.48 -18.86 -0.20 -3.60 16 3 C 0.31 3.69 7.49 -17.14 -0.13 3.56 16 4 C -0.14 -1.61 9.33 -39.29 -0.37 -1.98 16 5 C -0.02 -0.24 5.09 -104.28 -0.53 -0.77 16 6 C 0.12 1.42 2.63 -68.86 -0.18 1.24 16 7 H 0.10 1.25 7.52 -51.93 -0.39 0.86 16 8 C -0.18 -1.82 9.14 37.16 0.34 -1.48 16 9 N -0.68 -9.29 5.30 -107.95 -0.57 -9.86 16 10 C 0.06 0.98 5.48 -3.82 -0.02 0.96 16 11 C -0.11 -2.16 5.41 -26.73 -0.14 -2.31 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 17 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 C 0.01 0.11 7.28 -39.29 -0.29 -0.17 16 22 F -0.13 -1.49 16.69 2.25 0.04 -1.45 16 23 C 0.11 1.13 11.16 -17.48 -0.20 0.93 16 24 N -0.52 -5.94 9.21 -13.28 -0.12 -6.06 16 25 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.44 8.10 -51.93 -0.42 0.01 16 28 H 0.16 1.77 7.03 -52.49 -0.37 1.40 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.07 0.75 7.45 -51.93 -0.39 0.37 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.34 4.24 7.97 -39.29 -0.31 3.93 16 33 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 34 H 0.03 0.47 7.44 -51.93 -0.39 0.09 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 341.53 15.07 5.15 5.15 Total: -1.00 -31.11 341.53 -7.04 -38.14 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.03 Total: -0.91 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.01 Total: -11.80 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.04 Total: -42.28 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.20 Total: -3.60 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.11 -7.04 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287813888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.898 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds