Wall clock time and date at job start Tue Mar 31 2020 05:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47035 * 2 1 4 4 N 1.30845 * 125.84071 * 90.02151 * 3 2 1 5 5 N 1.40062 * 108.39114 * 180.02562 * 4 3 2 6 6 C 1.46498 * 126.04292 * 180.02562 * 5 4 3 7 7 C 1.35248 * 107.91536 * 0.02562 * 5 4 3 8 8 N 1.39208 * 126.22368 * 179.97438 * 7 5 4 9 9 C 1.46902 * 110.99630 * 305.71480 * 8 7 5 10 10 H 1.08997 * 109.47433 * 21.92790 * 9 8 7 11 11 C 1.50701 * 109.47084 * 141.93536 * 9 8 7 12 12 H 1.07996 * 120.00288 * 359.97438 * 11 9 8 13 13 C 1.37883 * 119.99686 * 179.97438 * 11 9 8 14 14 N 1.31510 * 120.00253 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99545 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47435 * 90.00223 * 15 13 11 17 17 H 1.48504 * 109.46789 * 209.99656 * 15 13 11 18 18 H 1.48501 * 109.47318 * 329.99586 * 15 13 11 19 19 C 1.52999 * 109.46652 * 261.93111 * 9 8 7 20 20 C 1.53005 * 109.47172 * 66.52791 * 19 9 8 21 21 C 1.36172 * 107.56023 * 0.26058 * 7 5 4 22 22 N 1.48037 * 126.09547 * 179.71964 * 21 7 5 23 23 O 1.21794 * 120.00239 * 89.99694 * 22 21 7 24 24 O 1.21802 * 119.99771 * 269.99583 * 22 21 7 25 25 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47551 * 299.99928 * 1 2 3 27 27 H 1.09006 * 109.46609 * 60.00397 * 1 2 3 28 28 H 1.09000 * 109.47541 * 239.99609 * 2 1 3 29 29 H 1.08998 * 109.47184 * 119.99841 * 2 1 3 30 30 H 1.08996 * 109.47134 * 265.22385 * 6 5 4 31 31 H 1.08994 * 109.47186 * 25.21889 * 6 5 4 32 32 H 1.08998 * 109.46967 * 145.22243 * 6 5 4 33 33 H 1.00898 * 111.00379 * 181.75923 * 8 7 5 34 34 H 0.97002 * 120.00075 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.47275 * 186.52344 * 19 9 8 36 36 H 1.08997 * 109.47553 * 306.52510 * 19 9 8 37 37 H 1.08993 * 109.46887 * 294.90209 * 20 19 9 38 38 H 1.08995 * 109.46871 * 54.90542 * 20 19 9 39 39 H 1.09002 * 109.46736 * 174.90363 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2880 2.1430 1.0607 5 7 2.7327 3.4030 0.6407 6 6 3.1258 4.5130 1.5123 7 6 2.7350 3.4138 -0.7117 8 7 3.1100 4.4794 -1.5252 9 6 2.3580 5.6938 -1.1819 10 1 1.9817 5.6121 -0.1623 11 6 3.2645 6.8930 -1.2884 12 1 4.2961 6.7657 -1.5813 13 6 2.7766 8.1526 -1.0118 14 7 1.5202 8.3076 -0.6556 15 14 3.9005 9.6389 -1.1431 16 1 3.8365 10.1877 -2.5215 17 1 3.4627 10.6774 -0.1761 18 1 5.2956 9.2333 -0.8361 19 6 1.1825 5.8557 -2.1478 20 6 0.1795 4.7219 -1.9252 21 6 2.2977 2.1950 -1.1331 22 7 2.1358 1.7653 -2.5405 23 8 3.0626 1.2342 -3.1255 24 8 1.0756 1.9428 -3.1133 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2746 5.1774 1.6607 31 1 3.4526 4.1206 2.4752 32 1 3.9426 5.0667 1.0493 33 1 2.9964 4.2473 -2.5005 34 1 1.1772 9.1938 -0.4607 35 1 0.6939 6.8134 -1.9683 36 1 1.5480 5.8211 -3.1741 37 1 0.6410 3.7711 -2.1918 38 1 -0.1176 4.7004 -0.8768 39 1 -0.6993 4.8867 -2.5486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288293116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:07 Heat of formation + Delta-G solvation = 65.814493 kcal Electronic energy + Delta-G solvation = -23703.840548 eV Core-core repulsion = 20265.486925 eV Total energy + Delta-G solvation = -3438.353622 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.15129 -40.98388 -37.14908 -36.09168 -34.65326 -33.08162 -31.90811 -31.29097 -29.43914 -27.58330 -26.34735 -25.12845 -23.48313 -23.07098 -20.97545 -20.64929 -19.50513 -18.50478 -18.40989 -17.11944 -16.72784 -16.08851 -15.50791 -15.18844 -14.84678 -14.31549 -14.06586 -13.86361 -13.32662 -13.07030 -12.79162 -12.64983 -12.18109 -11.77095 -11.71326 -11.49662 -11.35809 -11.28886 -11.21091 -11.06361 -10.96454 -10.80188 -10.63242 -10.49746 -10.29888 -10.11687 -9.92922 -9.24827 -8.97889 -8.67254 -7.91261 -6.33549 -4.41948 0.92656 1.68228 1.78034 2.27486 2.58172 3.13571 3.21633 3.24100 4.02368 4.23228 4.48628 4.69018 4.95800 5.07377 5.12431 5.17880 5.32242 5.49279 5.56778 5.74358 5.82427 5.88432 5.96032 6.05160 6.08785 6.13501 6.18730 6.36741 6.57917 6.63012 6.74671 6.81862 7.01673 7.19187 7.41149 7.49349 7.70148 7.84195 7.98650 8.04289 8.64422 9.25385 10.71949 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.005731 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.696103 B = 4884.542090 C = 5253.335634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C 0.143 3.857 4 N -0.283 5.283 5 N -0.359 5.359 6 C 0.103 3.897 7 C 0.389 3.611 8 N -0.602 5.602 9 C 0.213 3.787 10 H 0.048 0.952 11 C -0.516 4.516 12 H 0.069 0.931 13 C 0.065 3.935 14 N -0.888 5.888 15 Si 0.904 3.096 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.149 4.149 20 C -0.163 4.163 21 C -0.264 4.264 22 N 0.061 4.939 23 O -0.153 6.153 24 O -0.143 6.143 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.364 0.636 34 H 0.266 0.734 35 H 0.112 0.888 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.039 0.961 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -10.043 2.703 10.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C -0.027 4.027 4 N -0.104 5.104 5 N -0.143 5.143 6 C -0.036 4.036 7 C 0.156 3.844 8 N -0.230 5.230 9 C 0.110 3.890 10 H 0.066 0.934 11 C -0.554 4.554 12 H 0.087 0.913 13 C -0.138 4.138 14 N -0.526 5.526 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.188 4.188 20 C -0.221 4.221 21 C -0.362 4.362 22 N 0.590 4.410 23 O -0.375 6.375 24 O -0.366 6.366 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.188 0.812 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.218 -9.212 5.215 10.588 hybrid contribution -0.132 0.704 -1.689 1.835 sum -0.351 -8.508 3.526 9.216 Atomic orbital electron populations 1.21736 0.93323 1.02354 1.03117 1.20107 0.96983 0.87972 1.03962 1.21727 0.96787 0.96881 0.87277 1.77467 1.22788 0.90027 1.20072 1.48047 1.52206 1.11825 1.02269 1.22174 1.02870 0.85052 0.93551 1.18754 0.88869 0.91053 0.85771 1.57482 1.54996 1.03076 1.07416 1.19799 0.89864 0.83180 0.96162 0.93397 1.21051 0.97071 0.89801 1.47474 0.91304 1.24935 0.95300 0.99047 0.94567 1.69850 1.13623 1.23646 1.45435 0.86392 0.80673 0.81677 0.78136 1.20411 1.21074 1.19695 1.22264 0.97034 1.01169 0.98308 1.22073 0.99983 0.99707 1.00300 1.20071 1.33807 1.00298 0.82023 1.42482 0.99478 0.97566 1.01483 1.94507 1.33774 1.42089 1.67088 1.94491 1.16083 1.58120 1.67859 0.91520 0.91937 0.91914 0.90173 0.89190 0.89546 0.89228 0.87613 0.81166 0.92376 0.87027 0.93920 0.92991 0.94231 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.05 -0.65 6.49 -27.89 -0.18 -0.83 16 3 C 0.14 2.38 6.46 -82.44 -0.53 1.85 16 4 N -0.28 -4.90 12.56 33.65 0.42 -4.47 16 5 N -0.36 -6.47 3.94 -67.25 -0.26 -6.73 16 6 C 0.10 1.62 9.76 59.85 0.58 2.20 16 7 C 0.39 7.49 5.54 -153.41 -0.85 6.64 16 8 N -0.60 -12.24 6.22 -54.83 -0.34 -12.58 16 9 C 0.21 4.73 1.62 -68.86 -0.11 4.62 16 10 H 0.05 1.12 5.04 -51.93 -0.26 0.85 16 11 C -0.52 -12.55 8.84 -34.44 -0.30 -12.86 16 12 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.06 1.59 5.29 -17.82 -0.09 1.49 16 14 N -0.89 -22.63 11.29 55.43 0.63 -22.01 16 15 Si 0.90 19.51 29.54 -169.99 -5.02 14.48 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 17 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 C -0.15 -3.29 5.14 -26.73 -0.14 -3.42 16 20 C -0.16 -3.28 9.24 37.16 0.34 -2.93 16 21 C -0.26 -4.86 5.70 -80.10 -0.46 -5.32 16 22 N 0.06 1.12 4.09 33.89 0.14 1.26 16 23 O -0.15 -2.86 19.25 -29.46 -0.57 -3.42 16 24 O -0.14 -2.68 16.99 -29.46 -0.50 -3.18 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.11 1.74 8.00 -51.93 -0.42 1.32 16 33 H 0.36 7.36 7.82 -39.29 -0.31 7.05 16 34 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.11 2.75 5.92 -51.93 -0.31 2.44 16 36 H 0.04 0.93 7.99 -51.93 -0.41 0.51 16 37 H 0.05 1.02 3.65 -51.93 -0.19 0.83 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -26.25 326.02 -7.16 -33.41 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.20 Total: 8.22 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.37 Total: -9.89 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.58 Total: -44.53 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -1.07 Total: -6.60 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.25 -7.16 -33.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288293116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.223 kcal (2) G-P(sol) polarization free energy of solvation -26.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds