Wall clock time and date at job start Tue Mar 31 2020 05:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47035 * 2 1 4 4 N 1.30845 * 125.84071 * 90.02151 * 3 2 1 5 5 N 1.40062 * 108.39114 * 180.02562 * 4 3 2 6 6 C 1.46498 * 126.04292 * 180.02562 * 5 4 3 7 7 C 1.35248 * 107.91536 * 0.02562 * 5 4 3 8 8 N 1.39208 * 126.22368 * 179.97438 * 7 5 4 9 9 C 1.46902 * 110.99630 * 305.71480 * 8 7 5 10 10 H 1.08997 * 109.47433 * 21.92790 * 9 8 7 11 11 C 1.50701 * 109.47084 * 141.93536 * 9 8 7 12 12 H 1.07996 * 120.00288 * 359.97438 * 11 9 8 13 13 C 1.37883 * 119.99686 * 179.97438 * 11 9 8 14 14 N 1.31510 * 120.00253 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99545 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47435 * 90.00223 * 15 13 11 17 17 H 1.48504 * 109.46789 * 209.99656 * 15 13 11 18 18 H 1.48501 * 109.47318 * 329.99586 * 15 13 11 19 19 C 1.52999 * 109.46652 * 261.93111 * 9 8 7 20 20 C 1.53005 * 109.47172 * 66.52791 * 19 9 8 21 21 C 1.36172 * 107.56023 * 0.26058 * 7 5 4 22 22 N 1.48037 * 126.09547 * 179.71964 * 21 7 5 23 23 O 1.21794 * 120.00239 * 89.99694 * 22 21 7 24 24 O 1.21802 * 119.99771 * 269.99583 * 22 21 7 25 25 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47551 * 299.99928 * 1 2 3 27 27 H 1.09006 * 109.46609 * 60.00397 * 1 2 3 28 28 H 1.09000 * 109.47541 * 239.99609 * 2 1 3 29 29 H 1.08998 * 109.47184 * 119.99841 * 2 1 3 30 30 H 1.08996 * 109.47134 * 265.22385 * 6 5 4 31 31 H 1.08994 * 109.47186 * 25.21889 * 6 5 4 32 32 H 1.08998 * 109.46967 * 145.22243 * 6 5 4 33 33 H 1.00898 * 111.00379 * 181.75923 * 8 7 5 34 34 H 0.97002 * 120.00075 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.47275 * 186.52344 * 19 9 8 36 36 H 1.08997 * 109.47553 * 306.52510 * 19 9 8 37 37 H 1.08993 * 109.46887 * 294.90209 * 20 19 9 38 38 H 1.08995 * 109.46871 * 54.90542 * 20 19 9 39 39 H 1.09002 * 109.46736 * 174.90363 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2880 2.1430 1.0607 5 7 2.7327 3.4030 0.6407 6 6 3.1258 4.5130 1.5123 7 6 2.7350 3.4138 -0.7117 8 7 3.1100 4.4794 -1.5252 9 6 2.3580 5.6938 -1.1819 10 1 1.9817 5.6121 -0.1623 11 6 3.2645 6.8930 -1.2884 12 1 4.2961 6.7657 -1.5813 13 6 2.7766 8.1526 -1.0118 14 7 1.5202 8.3076 -0.6556 15 14 3.9005 9.6389 -1.1431 16 1 3.8365 10.1877 -2.5215 17 1 3.4627 10.6774 -0.1761 18 1 5.2956 9.2333 -0.8361 19 6 1.1825 5.8557 -2.1478 20 6 0.1795 4.7219 -1.9252 21 6 2.2977 2.1950 -1.1331 22 7 2.1358 1.7653 -2.5405 23 8 3.0626 1.2342 -3.1255 24 8 1.0756 1.9428 -3.1133 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2746 5.1774 1.6607 31 1 3.4526 4.1206 2.4752 32 1 3.9426 5.0667 1.0493 33 1 2.9964 4.2473 -2.5005 34 1 1.1772 9.1938 -0.4607 35 1 0.6939 6.8134 -1.9683 36 1 1.5480 5.8211 -3.1741 37 1 0.6410 3.7711 -2.1918 38 1 -0.1176 4.7004 -0.8768 39 1 -0.6993 4.8867 -2.5486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288293116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:06 Heat of formation + Delta-G solvation = 51.918559 kcal Electronic energy + Delta-G solvation = -23704.443121 eV Core-core repulsion = 20265.486925 eV Total energy + Delta-G solvation = -3438.956195 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.59191 -42.42560 -38.76959 -37.57125 -35.92040 -34.82036 -33.21911 -32.88096 -30.94346 -29.15332 -27.89631 -26.46916 -25.01635 -24.47335 -22.41780 -22.31359 -20.93324 -19.95661 -19.88375 -18.73610 -18.36920 -17.58081 -16.98054 -16.79081 -16.40893 -15.58081 -15.44475 -15.18137 -14.95213 -14.43075 -14.27980 -14.00906 -13.49795 -13.30514 -13.26030 -12.91670 -12.86097 -12.76661 -12.67984 -12.49347 -12.35268 -12.24355 -12.16896 -12.10841 -11.88050 -11.80359 -11.65510 -10.94522 -10.55931 -10.36876 -9.47719 -8.22527 -6.36187 -0.55534 0.24126 0.31172 0.93056 1.19520 1.41372 1.45224 1.53237 2.33693 2.70532 3.05968 3.12494 3.37825 3.71980 4.03234 4.15335 4.20367 4.23630 4.26684 4.34500 4.40044 4.47812 4.58573 4.69208 4.79474 4.89079 4.90936 4.96799 5.00882 5.11574 5.22643 5.35760 5.37896 5.50373 5.60098 5.79620 6.01078 6.17102 6.26774 6.55635 6.72016 7.33765 8.82026 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.005731 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.696103 B = 4884.542090 C = 5253.335634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C 0.144 3.856 4 N -0.284 5.284 5 N -0.362 5.362 6 C 0.103 3.897 7 C 0.371 3.629 8 N -0.604 5.604 9 C 0.223 3.777 10 H 0.038 0.962 11 C -0.526 4.526 12 H 0.060 0.940 13 C 0.027 3.973 14 N -0.910 5.910 15 Si 0.960 3.040 16 H -0.280 1.280 17 H -0.283 1.283 18 H -0.269 1.269 19 C -0.144 4.144 20 C -0.152 4.152 21 C -0.270 4.270 22 N 0.064 4.936 23 O -0.155 6.155 24 O -0.149 6.149 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.363 0.637 34 H 0.266 0.734 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.030 0.970 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 -11.163 3.240 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C -0.025 4.025 4 N -0.105 5.105 5 N -0.146 5.146 6 C -0.036 4.036 7 C 0.138 3.862 8 N -0.231 5.231 9 C 0.119 3.881 10 H 0.055 0.945 11 C -0.564 4.564 12 H 0.078 0.922 13 C -0.173 4.173 14 N -0.548 5.548 15 Si 0.785 3.215 16 H -0.206 1.206 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.183 4.183 20 C -0.209 4.209 21 C -0.368 4.368 22 N 0.593 4.407 23 O -0.376 6.376 24 O -0.370 6.370 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.095 0.905 31 H 0.140 0.860 32 H 0.113 0.887 33 H 0.186 0.814 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.095 -10.345 5.762 11.842 hybrid contribution -0.178 0.986 -1.846 2.100 sum -0.273 -9.358 3.917 10.149 Atomic orbital electron populations 1.21723 0.92306 1.04029 1.02013 1.20331 0.97703 0.85649 1.05375 1.22385 0.95710 0.98283 0.86171 1.77472 1.22960 0.89750 1.20299 1.48312 1.51794 1.12456 1.02004 1.22252 1.02074 0.84692 0.94588 1.18819 0.89976 0.91061 0.86374 1.57344 1.55350 1.02987 1.07465 1.19533 0.89625 0.83466 0.95497 0.94450 1.21232 0.96985 0.90874 1.47341 0.92172 1.25544 0.96320 1.01143 0.94331 1.69949 1.14750 1.24033 1.46089 0.85527 0.79213 0.78911 0.77804 1.20566 1.20836 1.19398 1.22137 0.97384 1.00676 0.98117 1.21951 0.99941 0.99050 0.99946 1.20296 1.33762 1.00439 0.82325 1.42496 0.99349 0.97379 1.01516 1.94502 1.33775 1.42157 1.67175 1.94487 1.16204 1.58363 1.67969 0.88508 0.92261 0.93736 0.89671 0.86826 0.90489 0.85975 0.88651 0.81362 0.92423 0.89442 0.94148 0.92493 0.95124 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.89 71.98 0.71 -2.22 16 2 C -0.05 -1.18 6.49 29.85 0.19 -0.98 16 3 C 0.14 4.55 6.46 43.08 0.28 4.83 16 4 N -0.28 -9.38 12.56 -47.44 -0.60 -9.97 16 5 N -0.36 -12.74 3.94 -366.67 -1.44 -14.18 16 6 C 0.10 3.17 9.76 127.77 1.25 4.42 16 7 C 0.37 14.11 5.54 131.43 0.73 14.84 16 8 N -0.60 -24.61 6.22 -327.38 -2.04 -26.65 16 9 C 0.22 10.00 1.62 44.17 0.07 10.07 16 10 H 0.04 1.77 5.04 -2.39 -0.01 1.76 16 11 C -0.53 -25.81 8.84 25.60 0.23 -25.58 16 12 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 13 C 0.03 1.35 5.29 84.66 0.45 1.80 16 14 N -0.91 -46.76 11.29 21.45 0.24 -46.52 16 15 Si 0.96 39.94 29.54 68.60 2.03 41.97 16 16 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 19 C -0.14 -6.42 5.14 30.60 0.16 -6.26 16 20 C -0.15 -6.04 9.24 71.98 0.67 -5.37 16 21 C -0.27 -9.69 5.70 36.26 0.21 -9.48 16 22 N 0.06 2.29 4.09 -46.71 -0.19 2.10 16 23 O -0.15 -5.58 19.25 18.89 0.36 -5.21 16 24 O -0.15 -5.41 16.99 18.88 0.32 -5.09 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.52 7.15 -2.39 -0.02 2.50 16 31 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.09 3.13 8.00 -2.39 -0.02 3.11 16 33 H 0.36 14.70 7.82 -89.70 -0.70 14.00 16 34 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 35 H 0.09 4.37 5.92 -2.38 -0.01 4.36 16 36 H 0.04 1.77 7.99 -2.39 -0.02 1.75 16 37 H 0.06 2.20 3.65 -2.39 -0.01 2.19 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -54.76 326.02 4.00 -50.76 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.38 Total: 26.74 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 4.93 Total: -13.95 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -4.03 Total: -95.22 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.68 Total: -10.31 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -54.76 4.00 -50.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288293116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.683 kcal (2) G-P(sol) polarization free energy of solvation -54.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds