Wall clock time and date at job start Tue Mar 31 2020 05:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 H 1.09002 * 109.47126 * 308.09642 * 3 2 1 5 5 C 1.50703 * 109.47459 * 188.09358 * 3 2 1 6 6 H 1.07994 * 119.99924 * 240.00325 * 5 3 2 7 7 C 1.37879 * 119.99429 * 60.00001 * 5 3 2 8 8 N 1.31509 * 120.00218 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99603 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46907 * 120.00156 * 9 7 5 12 12 H 1.48504 * 109.46908 * 240.00233 * 9 7 5 13 13 N 1.46904 * 109.47011 * 68.09639 * 3 2 1 14 14 C 1.39572 * 111.00006 * 278.98674 * 13 3 2 15 15 C 1.35419 * 126.63298 * 127.30400 * 14 13 3 16 16 N 1.48077 * 125.94878 * 0.02562 * 15 14 13 17 17 O 1.21806 * 119.99677 * 359.97438 * 16 15 14 18 18 O 1.21794 * 120.00427 * 179.97438 * 16 15 14 19 19 N 1.34241 * 108.10834 * 179.97438 * 15 14 13 20 20 C 1.30391 * 109.39968 * 359.97438 * 19 15 14 21 21 C 1.50704 * 125.65247 * 179.97438 * 20 19 15 22 22 N 1.36187 * 108.68612 * 359.77673 * 20 19 15 23 23 C 1.46502 * 126.46635 * 180.23294 * 22 20 19 24 24 C 1.52996 * 109.46943 * 277.38402 * 23 22 20 25 25 H 1.08999 * 109.46773 * 171.95339 * 1 2 3 26 26 H 1.08995 * 109.47491 * 51.95424 * 1 2 3 27 27 H 1.09002 * 109.46998 * 291.95476 * 1 2 3 28 28 H 1.09003 * 109.47093 * 119.99804 * 2 1 3 29 29 H 1.08999 * 109.47423 * 240.00303 * 2 1 3 30 30 H 0.97004 * 119.99664 * 179.97438 * 8 7 5 31 31 H 1.00897 * 110.99992 * 155.03693 * 13 3 2 32 32 H 1.09002 * 109.46901 * 90.03105 * 21 20 19 33 33 H 1.09005 * 109.46853 * 210.02453 * 21 20 19 34 34 H 1.08996 * 109.47241 * 330.02766 * 21 20 19 35 35 H 1.09005 * 109.46972 * 37.38017 * 23 22 20 36 36 H 1.08998 * 109.47078 * 157.38380 * 23 22 20 37 37 H 1.08999 * 109.47560 * 313.24131 * 24 23 22 38 38 H 1.09000 * 109.47592 * 73.24497 * 24 23 22 39 39 H 1.09000 * 109.46776 * 193.24354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5633 1.9964 -0.8088 5 6 3.5337 1.4473 -0.2000 6 1 4.1778 1.8780 0.5522 7 6 4.0778 0.9016 -1.3434 8 7 3.2933 0.3774 -2.2595 9 14 5.9292 0.9081 -1.5917 10 1 6.5830 1.5519 -0.4241 11 1 6.4159 -0.4887 -1.7230 12 1 6.2605 1.6658 -2.8252 13 7 1.7161 2.0764 1.2851 14 6 0.3922 2.5178 1.3054 15 6 -0.5403 2.2325 2.2450 16 7 -0.3356 1.3895 3.4451 17 8 0.7515 0.8816 3.6543 18 8 -1.2542 1.2041 4.2231 19 7 -1.6824 2.8477 1.8997 20 6 -1.5018 3.5036 0.7874 21 6 -2.5446 4.3232 0.0717 22 7 -0.2135 3.3288 0.3820 23 6 0.4068 3.8977 -0.8171 24 6 0.0702 3.0254 -2.0281 25 1 -0.3633 -1.0176 -0.1439 26 1 -0.3634 0.6333 -0.8092 27 1 -0.3633 0.3842 0.9532 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.6761 -0.0061 -3.0641 31 1 2.3526 2.8331 1.4856 32 1 -2.5109 5.3506 0.4342 33 1 -2.3451 4.3093 -0.9999 34 1 -3.5317 3.9024 0.2630 35 1 0.0268 4.9064 -0.9791 36 1 1.4881 3.9337 -0.6846 37 1 0.2339 1.9773 -1.7778 38 1 -0.9737 3.1742 -2.3043 39 1 0.7106 3.3033 -2.8652 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289615751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:39 Heat of formation + Delta-G solvation = 62.393132 kcal Electronic energy + Delta-G solvation = -24064.035248 eV Core-core repulsion = 20625.533264 eV Total energy + Delta-G solvation = -3438.501984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.63797 -41.00614 -37.00711 -35.70398 -34.93931 -33.14733 -31.53217 -30.88961 -30.01787 -28.10020 -26.74687 -24.64072 -23.33799 -22.94174 -20.98692 -20.52820 -19.47693 -18.45996 -17.72438 -17.44992 -16.82490 -16.22180 -15.73336 -15.12221 -14.79030 -14.53111 -13.98758 -13.75976 -13.18481 -12.92261 -12.70736 -12.61190 -12.37614 -12.16279 -11.91113 -11.43327 -11.30250 -11.07743 -10.97646 -10.84788 -10.68017 -10.43596 -10.39897 -10.38313 -10.11307 -9.89170 -9.78254 -9.13706 -8.87859 -8.38130 -8.03130 -6.31457 -4.39896 0.88639 1.77302 1.94645 2.66219 2.95722 3.12605 3.23039 3.26378 4.13839 4.30094 4.45096 4.51837 4.74967 4.97142 5.00708 5.19489 5.29591 5.33825 5.54445 5.60899 5.72496 5.92520 5.98807 6.02993 6.10078 6.24872 6.43870 6.58012 6.75651 6.83287 6.96234 7.09171 7.20627 7.43484 7.51537 7.60690 7.77676 7.97740 8.15830 8.51667 8.64788 9.27061 10.73584 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.006949 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.305258 B = 4028.671281 C = 4916.700677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C 0.197 3.803 4 H 0.037 0.963 5 C -0.527 4.527 6 H 0.066 0.934 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.900 3.100 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.590 5.590 14 C 0.307 3.693 15 C 0.031 3.969 16 N 0.077 4.923 17 O -0.125 6.125 18 O -0.185 6.185 19 N -0.444 5.444 20 C 0.227 3.773 21 C -0.066 4.066 22 N -0.472 5.472 23 C 0.096 3.904 24 C -0.178 4.178 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.264 0.736 31 H 0.358 0.642 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.864 8.852 -1.981 11.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C 0.093 3.907 4 H 0.054 0.946 5 C -0.565 4.565 6 H 0.084 0.916 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.227 5.227 14 C 0.089 3.911 15 C -0.179 4.179 16 N 0.596 4.404 17 O -0.346 6.346 18 O -0.393 6.393 19 N -0.165 5.165 20 C -0.038 4.038 21 C -0.124 4.124 22 N -0.162 5.162 23 C -0.025 4.025 24 C -0.235 4.235 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.186 0.814 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.738 8.568 -2.023 11.721 hybrid contribution 1.802 0.343 -0.897 2.042 sum -5.936 8.911 -2.920 11.098 Atomic orbital electron populations 1.22066 0.99875 0.99747 0.99449 1.21612 0.91099 0.99024 1.03234 1.19927 0.96804 0.92164 0.81833 0.94607 1.21160 0.90412 1.40383 1.04547 0.91572 1.24862 0.98548 0.94502 0.95545 1.69865 1.34805 1.38430 1.09041 0.86394 0.84670 0.78080 0.78058 1.19566 1.20717 1.21028 1.58938 0.95413 1.29899 1.38439 1.19806 0.92889 0.90115 0.88262 1.20056 0.93222 1.10234 0.94409 1.42078 1.00233 0.98496 0.99618 1.94619 1.12386 1.48683 1.78899 1.94494 1.36268 1.66246 1.42288 1.69600 1.23841 1.10777 1.12289 1.23208 0.85367 1.02210 0.93056 1.20255 0.95399 0.98006 0.98769 1.46964 1.11407 1.36781 1.21060 1.22108 1.00331 0.97525 0.82575 1.22403 1.01602 1.02771 0.96769 0.94410 0.94345 0.94587 0.93231 0.88223 0.92576 0.81448 0.89772 0.90144 0.88762 0.88817 0.87657 0.88938 0.92515 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.93 37.16 0.33 -2.92 16 2 C -0.11 -2.57 5.46 -26.73 -0.15 -2.71 16 3 C 0.20 4.28 1.79 -68.86 -0.12 4.15 16 4 H 0.04 0.75 2.55 -51.93 -0.13 0.62 16 5 C -0.53 -12.62 8.60 -34.44 -0.30 -12.91 16 6 H 0.07 1.59 7.68 -52.49 -0.40 1.18 16 7 C 0.07 1.67 5.28 -17.82 -0.09 1.58 16 8 N -0.88 -22.07 11.29 55.43 0.63 -21.45 16 9 Si 0.90 19.35 29.54 -169.99 -5.02 14.32 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.59 -11.78 5.49 -54.46 -0.30 -12.08 16 14 C 0.31 5.75 4.59 -151.71 -0.70 5.05 16 15 C 0.03 0.62 6.27 -145.13 -0.91 -0.29 16 16 N 0.08 1.68 4.46 32.78 0.15 1.82 16 17 O -0.13 -2.81 18.32 -29.46 -0.54 -3.35 16 18 O -0.19 -4.09 19.24 -29.46 -0.57 -4.66 16 19 N -0.44 -8.26 11.22 -7.44 -0.08 -8.34 16 20 C 0.23 3.36 7.93 -154.45 -1.23 2.13 16 21 C -0.07 -0.61 10.11 36.01 0.36 -0.24 16 22 N -0.47 -7.21 2.77 -112.61 -0.31 -7.52 16 23 C 0.10 1.20 5.43 -4.04 -0.02 1.18 16 24 C -0.18 -2.36 9.42 37.16 0.35 -2.01 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.77 5.74 -51.93 -0.30 0.47 16 27 H 0.04 0.78 4.91 -51.93 -0.25 0.53 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.10 2.51 5.90 -51.93 -0.31 2.21 16 30 H 0.26 6.37 8.31 -40.82 -0.34 6.03 16 31 H 0.36 6.64 8.35 -39.29 -0.33 6.31 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.59 7.15 -51.93 -0.37 0.22 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 36 H 0.11 1.46 7.13 -51.93 -0.37 1.09 16 37 H 0.09 1.60 4.04 -51.93 -0.21 1.39 16 38 H 0.06 0.61 7.41 -51.93 -0.39 0.23 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -28.80 315.35 -8.49 -37.29 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.72 Total: 6.20 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.47 Total: -6.99 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.08 Total: -47.57 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -1.11 Total: -8.01 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.80 -8.49 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289615751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.683 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds