Wall clock time and date at job start Tue Mar 31 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 H 1.09002 * 109.47126 * 308.09642 * 3 2 1 5 5 C 1.50703 * 109.47459 * 188.09358 * 3 2 1 6 6 H 1.07994 * 119.99924 * 240.00325 * 5 3 2 7 7 C 1.37879 * 119.99429 * 60.00001 * 5 3 2 8 8 N 1.31509 * 120.00218 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99603 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46907 * 120.00156 * 9 7 5 12 12 H 1.48504 * 109.46908 * 240.00233 * 9 7 5 13 13 N 1.46904 * 109.47011 * 68.09639 * 3 2 1 14 14 C 1.39572 * 111.00006 * 278.98674 * 13 3 2 15 15 C 1.35419 * 126.63298 * 127.30400 * 14 13 3 16 16 N 1.48077 * 125.94878 * 0.02562 * 15 14 13 17 17 O 1.21806 * 119.99677 * 359.97438 * 16 15 14 18 18 O 1.21794 * 120.00427 * 179.97438 * 16 15 14 19 19 N 1.34241 * 108.10834 * 179.97438 * 15 14 13 20 20 C 1.30391 * 109.39968 * 359.97438 * 19 15 14 21 21 C 1.50704 * 125.65247 * 179.97438 * 20 19 15 22 22 N 1.36187 * 108.68612 * 359.77673 * 20 19 15 23 23 C 1.46502 * 126.46635 * 180.23294 * 22 20 19 24 24 C 1.52996 * 109.46943 * 277.38402 * 23 22 20 25 25 H 1.08999 * 109.46773 * 171.95339 * 1 2 3 26 26 H 1.08995 * 109.47491 * 51.95424 * 1 2 3 27 27 H 1.09002 * 109.46998 * 291.95476 * 1 2 3 28 28 H 1.09003 * 109.47093 * 119.99804 * 2 1 3 29 29 H 1.08999 * 109.47423 * 240.00303 * 2 1 3 30 30 H 0.97004 * 119.99664 * 179.97438 * 8 7 5 31 31 H 1.00897 * 110.99992 * 155.03693 * 13 3 2 32 32 H 1.09002 * 109.46901 * 90.03105 * 21 20 19 33 33 H 1.09005 * 109.46853 * 210.02453 * 21 20 19 34 34 H 1.08996 * 109.47241 * 330.02766 * 21 20 19 35 35 H 1.09005 * 109.46972 * 37.38017 * 23 22 20 36 36 H 1.08998 * 109.47078 * 157.38380 * 23 22 20 37 37 H 1.08999 * 109.47560 * 313.24131 * 24 23 22 38 38 H 1.09000 * 109.47592 * 73.24497 * 24 23 22 39 39 H 1.09000 * 109.46776 * 193.24354 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5633 1.9964 -0.8088 5 6 3.5337 1.4473 -0.2000 6 1 4.1778 1.8780 0.5522 7 6 4.0778 0.9016 -1.3434 8 7 3.2933 0.3774 -2.2595 9 14 5.9292 0.9081 -1.5917 10 1 6.5830 1.5519 -0.4241 11 1 6.4159 -0.4887 -1.7230 12 1 6.2605 1.6658 -2.8252 13 7 1.7161 2.0764 1.2851 14 6 0.3922 2.5178 1.3054 15 6 -0.5403 2.2325 2.2450 16 7 -0.3356 1.3895 3.4451 17 8 0.7515 0.8816 3.6543 18 8 -1.2542 1.2041 4.2231 19 7 -1.6824 2.8477 1.8997 20 6 -1.5018 3.5036 0.7874 21 6 -2.5446 4.3232 0.0717 22 7 -0.2135 3.3288 0.3820 23 6 0.4068 3.8977 -0.8171 24 6 0.0702 3.0254 -2.0281 25 1 -0.3633 -1.0176 -0.1439 26 1 -0.3634 0.6333 -0.8092 27 1 -0.3633 0.3842 0.9532 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.6761 -0.0061 -3.0641 31 1 2.3526 2.8331 1.4856 32 1 -2.5109 5.3506 0.4342 33 1 -2.3451 4.3093 -0.9999 34 1 -3.5317 3.9024 0.2630 35 1 0.0268 4.9064 -0.9791 36 1 1.4881 3.9337 -0.6846 37 1 0.2339 1.9773 -1.7778 38 1 -0.9737 3.1742 -2.3043 39 1 0.7106 3.3033 -2.8652 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289615751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:38 Heat of formation + Delta-G solvation = 46.238529 kcal Electronic energy + Delta-G solvation = -24064.735764 eV Core-core repulsion = 20625.533264 eV Total energy + Delta-G solvation = -3439.202500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.00429 -42.62390 -38.60236 -37.38758 -36.17657 -34.82507 -33.18088 -32.11551 -31.31192 -29.47478 -28.44844 -26.09862 -24.75268 -24.44965 -22.43106 -22.08990 -20.94048 -19.94084 -19.34690 -19.02926 -18.49631 -17.70282 -17.32652 -16.50830 -16.27362 -16.00478 -15.27513 -14.88681 -14.52258 -14.32840 -14.03605 -13.95821 -13.47143 -13.39367 -13.22779 -13.01492 -12.83203 -12.76480 -12.54453 -12.34404 -12.30702 -12.13548 -12.12095 -11.99672 -11.69539 -11.61498 -11.08236 -10.92694 -10.65684 -9.92578 -9.54668 -8.17854 -6.30467 -0.76500 0.28606 0.61861 1.40209 1.41823 1.47454 1.54411 1.56019 2.38452 2.88412 3.12680 3.22536 3.42971 3.66975 3.96040 4.21749 4.25789 4.32761 4.34415 4.38534 4.53242 4.68828 4.70599 4.71862 4.91067 4.97322 4.97847 5.01792 5.17028 5.24139 5.32061 5.50549 5.61061 5.68259 5.78622 6.07206 6.11709 6.24711 6.51516 6.78801 6.86536 7.38275 8.86299 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.006949 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.305258 B = 4028.671281 C = 4916.700677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C 0.205 3.795 4 H 0.052 0.948 5 C -0.540 4.540 6 H 0.060 0.940 7 C 0.032 3.968 8 N -0.902 5.902 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.601 5.601 14 C 0.304 3.696 15 C 0.011 3.989 16 N 0.077 4.923 17 O -0.157 6.157 18 O -0.199 6.199 19 N -0.480 5.480 20 C 0.255 3.745 21 C -0.068 4.068 22 N -0.465 5.465 23 C 0.092 3.908 24 C -0.175 4.175 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.027 0.973 28 H 0.022 0.978 29 H 0.078 0.922 30 H 0.265 0.735 31 H 0.363 0.637 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.961 11.259 -3.809 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C 0.100 3.900 4 H 0.069 0.931 5 C -0.578 4.578 6 H 0.078 0.922 7 C -0.169 4.169 8 N -0.540 5.540 9 Si 0.780 3.220 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.238 5.238 14 C 0.083 3.917 15 C -0.199 4.199 16 N 0.590 4.410 17 O -0.371 6.371 18 O -0.405 6.405 19 N -0.202 5.202 20 C -0.011 4.011 21 C -0.126 4.126 22 N -0.154 5.154 23 C -0.028 4.028 24 C -0.232 4.232 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.191 0.809 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.164 0.836 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.807 10.966 -3.833 14.578 hybrid contribution 2.055 -0.319 -0.405 2.118 sum -6.753 10.648 -4.237 13.301 Atomic orbital electron populations 1.21923 0.98247 1.00302 0.99408 1.21472 0.92509 0.99743 1.00681 1.19759 0.95684 0.91551 0.83048 0.93110 1.21409 0.91747 1.40284 1.04399 0.92198 1.25440 1.01654 0.94357 0.95487 1.69947 1.35926 1.38885 1.09273 0.85567 0.80865 0.77481 0.78040 1.19596 1.21484 1.20186 1.58676 0.96489 1.30834 1.37845 1.19545 0.92150 0.90899 0.89063 1.20125 0.94646 1.11026 0.94067 1.42362 0.99863 0.98543 1.00216 1.94600 1.12739 1.50017 1.79752 1.94454 1.36220 1.66662 1.43186 1.69629 1.23443 1.12631 1.14495 1.24421 0.85595 0.99750 0.91353 1.20654 0.93677 0.98380 0.99881 1.47096 1.11582 1.35742 1.21017 1.22415 0.99728 0.99747 0.80916 1.22345 1.03827 0.99972 0.97043 0.93931 0.93119 0.95385 0.95932 0.90371 0.92600 0.80866 0.86831 0.87186 0.87956 0.83611 0.89256 0.93217 0.89379 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.00 8.93 71.98 0.64 -5.36 16 2 C -0.11 -4.99 5.46 30.59 0.17 -4.82 16 3 C 0.20 8.95 1.79 44.17 0.08 9.03 16 4 H 0.05 2.10 2.55 -2.39 -0.01 2.10 16 5 C -0.54 -26.10 8.60 25.60 0.22 -25.88 16 6 H 0.06 2.91 7.68 -2.91 -0.02 2.88 16 7 C 0.03 1.55 5.28 84.66 0.45 2.00 16 8 N -0.90 -45.16 11.29 21.45 0.24 -44.92 16 9 Si 0.95 39.62 29.54 68.60 2.03 41.65 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 13 N -0.60 -24.28 5.49 -326.22 -1.79 -26.07 16 14 C 0.30 11.17 4.59 130.57 0.60 11.77 16 15 C 0.01 0.43 6.27 128.27 0.80 1.24 16 16 N 0.08 3.48 4.46 -50.19 -0.22 3.26 16 17 O -0.16 -7.36 18.32 18.88 0.35 -7.01 16 18 O -0.20 -9.02 19.24 18.89 0.36 -8.66 16 19 N -0.48 -17.14 11.22 -177.44 -1.99 -19.13 16 20 C 0.25 6.67 7.93 137.79 1.09 7.77 16 21 C -0.07 -0.88 10.11 71.24 0.72 -0.16 16 22 N -0.47 -12.97 2.77 -510.18 -1.41 -14.38 16 23 C 0.09 1.96 5.43 86.38 0.47 2.43 16 24 C -0.17 -4.03 9.42 71.98 0.68 -3.35 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 2.00 5.74 -2.39 -0.01 1.98 16 27 H 0.03 1.22 4.91 -2.39 -0.01 1.21 16 28 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 4.05 5.90 -2.39 -0.01 4.03 16 30 H 0.26 12.73 8.31 -92.71 -0.77 11.96 16 31 H 0.36 13.64 8.35 -89.70 -0.75 12.89 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.11 0.86 7.15 -2.38 -0.02 0.84 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.15 1.68 8.03 -2.38 -0.02 1.66 16 36 H 0.09 2.27 7.13 -2.39 -0.02 2.25 16 37 H 0.05 1.62 4.04 -2.39 -0.01 1.61 16 38 H 0.09 1.46 7.41 -2.39 -0.02 1.44 16 39 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -65.03 315.35 3.84 -61.19 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.36 Total: 19.41 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.92 Total: -5.34 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -5.17 Total: -101.24 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.71 Total: -15.67 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -65.03 3.84 -61.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289615751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.429 kcal (2) G-P(sol) polarization free energy of solvation -65.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds