Wall clock time and date at job start Tue Mar 31 2020 05:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 H 1.08998 * 109.47635 * 80.45126 * 3 2 1 5 5 C 1.50703 * 109.47300 * 200.45128 * 3 2 1 6 6 H 1.07999 * 119.99724 * 119.99509 * 5 3 2 7 7 C 1.37870 * 120.00048 * 299.99844 * 5 3 2 8 8 N 1.31512 * 120.00037 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00082 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46885 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46771 * 120.00167 * 9 7 5 12 12 H 1.48498 * 109.47023 * 240.00439 * 9 7 5 13 13 N 1.46904 * 109.46895 * 320.45111 * 3 2 1 14 14 C 1.39582 * 110.99835 * 105.38200 * 13 3 2 15 15 C 1.35416 * 126.62673 * 163.80802 * 14 13 3 16 16 N 1.48078 * 125.95219 * 359.96447 * 15 14 13 17 17 O 1.21793 * 119.99891 * 359.97438 * 16 15 14 18 18 O 1.21796 * 120.00003 * 180.02562 * 16 15 14 19 19 N 1.34245 * 108.09919 * 179.83921 * 15 14 13 20 20 C 1.30384 * 109.40562 * 0.43110 * 19 15 14 21 21 C 1.50697 * 125.65985 * 179.73384 * 20 19 15 22 22 N 1.36199 * 108.68340 * 359.73743 * 20 19 15 23 23 C 1.46500 * 126.46481 * 179.97438 * 22 20 19 24 24 C 1.53003 * 109.47031 * 277.51155 * 23 22 20 25 25 H 1.08996 * 109.47394 * 301.43162 * 1 2 3 26 26 H 1.09001 * 109.46783 * 61.43566 * 1 2 3 27 27 H 1.09005 * 109.46680 * 181.43002 * 1 2 3 28 28 H 1.09006 * 109.47034 * 119.99473 * 2 1 3 29 29 H 1.08999 * 109.47678 * 240.00049 * 2 1 3 30 30 H 0.97002 * 120.00257 * 179.97438 * 8 7 5 31 31 H 1.00892 * 111.00124 * 341.42661 * 13 3 2 32 32 H 1.09002 * 109.47259 * 270.00278 * 21 20 19 33 33 H 1.08990 * 109.47079 * 30.00326 * 21 20 19 34 34 H 1.08998 * 109.46934 * 150.00643 * 21 20 19 35 35 H 1.08998 * 109.47036 * 37.51222 * 23 22 20 36 36 H 1.08995 * 109.46705 * 157.50778 * 23 22 20 37 37 H 1.08993 * 109.46747 * 308.43923 * 24 23 22 38 38 H 1.08999 * 109.46715 * 68.44224 * 24 23 22 39 39 H 1.08994 * 109.46748 * 188.43727 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 2.0004 1.8419 1.0134 5 6 3.4626 1.4724 -0.4965 6 1 3.7147 2.0417 -1.3789 7 6 4.4422 0.7728 0.1758 8 7 4.1352 0.0798 1.2505 9 14 6.2054 0.8092 -0.4400 10 1 6.2871 1.6555 -1.6576 11 1 7.0863 1.3731 0.6142 12 1 6.6445 -0.5714 -0.7659 13 7 1.1963 2.2601 -0.8819 14 6 0.3472 3.0828 -0.1400 15 6 -0.3317 4.1627 -0.5946 16 7 -0.3051 4.6867 -1.9793 17 8 0.3732 4.1341 -2.8266 18 8 -0.9608 5.6709 -2.2707 19 7 -1.0353 4.6739 0.4281 20 6 -0.8172 3.9656 1.5008 21 6 -1.4183 4.2203 2.8590 22 7 0.0442 2.9573 1.1902 23 6 0.5513 1.9323 2.1059 24 6 1.7344 2.4950 2.8964 25 1 -0.3634 0.5359 0.8768 26 1 -0.3633 0.4914 -0.9026 27 1 -0.3633 -1.0274 0.0256 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 4.8243 -0.4127 1.7233 31 1 0.6718 1.6805 -1.5198 32 1 -0.7681 4.8876 3.4248 33 1 -2.3987 4.6817 2.7417 34 1 -1.5227 3.2759 3.3930 35 1 -0.2396 1.6381 2.7958 36 1 0.8766 1.0633 1.5342 37 1 2.4601 2.9257 2.2067 38 1 1.3804 3.2665 3.5801 39 1 2.2052 1.6934 3.4654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289615753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:43 Heat of formation + Delta-G solvation = 102.587293 kcal Electronic energy + Delta-G solvation = -24006.413152 eV Core-core repulsion = 20569.654118 eV Total energy + Delta-G solvation = -3436.759034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.70213 -41.05741 -38.03300 -35.78261 -34.73152 -33.12730 -31.83892 -30.82636 -29.94681 -28.02886 -26.90275 -24.62505 -23.45029 -23.26902 -21.27463 -20.43250 -19.62594 -18.47717 -17.80059 -17.14285 -16.73434 -16.48847 -15.54989 -15.42397 -14.85632 -14.75422 -13.86033 -13.73332 -13.56328 -13.16018 -12.77749 -12.63607 -12.47888 -11.87897 -11.74862 -11.53347 -11.11525 -10.98909 -10.91631 -10.86320 -10.71509 -10.64954 -10.46219 -10.37446 -10.30580 -9.96280 -9.85383 -9.59226 -8.91884 -8.64027 -7.65170 -6.33164 -4.33588 0.91832 1.79423 2.01501 2.68840 2.99405 3.15767 3.25246 3.32463 4.11535 4.35022 4.44282 4.61280 4.76507 5.00161 5.06359 5.30201 5.38083 5.42386 5.51154 5.54761 5.60577 5.65139 5.76958 5.80506 5.98814 6.10667 6.20092 6.29594 6.45462 6.51719 6.62759 6.98399 7.09676 7.12681 7.42534 7.66693 7.71191 7.77723 8.04879 8.50137 8.73487 9.31656 10.75181 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.007058 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.111775 B = 3966.109848 C = 4784.778371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.145 4.145 3 C 0.159 3.841 4 H 0.082 0.918 5 C -0.502 4.502 6 H 0.071 0.929 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.901 3.099 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.568 5.568 14 C 0.320 3.680 15 C -0.009 4.009 16 N 0.084 4.916 17 O -0.155 6.155 18 O -0.182 6.182 19 N -0.439 5.439 20 C 0.225 3.775 21 C -0.063 4.063 22 N -0.468 5.468 23 C 0.051 3.949 24 C -0.165 4.165 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.263 0.737 31 H 0.367 0.633 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.158 0.842 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.135 -0.301 6.699 10.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.185 4.185 3 C 0.054 3.946 4 H 0.099 0.901 5 C -0.541 4.541 6 H 0.089 0.911 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.729 3.271 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.204 5.204 14 C 0.097 3.903 15 C -0.219 4.219 16 N 0.599 4.401 17 O -0.368 6.368 18 O -0.391 6.391 19 N -0.160 5.160 20 C -0.041 4.041 21 C -0.121 4.121 22 N -0.160 5.160 23 C -0.069 4.069 24 C -0.223 4.223 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.201 0.799 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.175 0.825 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.035 0.374 7.253 10.831 hybrid contribution 1.067 -1.149 -0.355 1.608 sum -6.967 -0.776 6.898 9.835 Atomic orbital electron populations 1.22564 0.99560 1.01679 1.00654 1.22247 0.90559 1.00831 1.04822 1.20723 0.92228 0.87477 0.94164 0.90078 1.21109 0.90333 1.29905 1.12726 0.91082 1.24874 0.99311 0.94864 0.94839 1.69855 1.33804 1.31684 1.18167 0.86364 0.83755 0.77906 0.79090 1.19457 1.21026 1.20920 1.58179 1.17530 1.27074 1.17594 1.19632 0.91089 0.96090 0.83461 1.19881 1.14225 1.01026 0.86801 1.42024 0.98300 0.99359 1.00437 1.94575 1.39595 1.60995 1.41595 1.94489 1.42588 1.16433 1.85584 1.69514 1.22682 1.27111 0.96691 1.23169 0.95212 0.88939 0.96783 1.20213 1.01514 1.03051 0.87346 1.46370 1.35191 1.25343 1.09114 1.23314 0.97806 0.92527 0.93238 1.22176 0.97451 1.02178 1.00464 0.92735 0.93960 0.92618 0.88597 0.91572 0.92714 0.79926 0.89748 0.88816 0.90301 0.89386 0.82502 0.90215 0.92870 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 8.54 37.16 0.32 -2.55 16 2 C -0.15 -2.75 4.18 -26.73 -0.11 -2.86 16 3 C 0.16 3.32 1.92 -68.86 -0.13 3.19 16 4 H 0.08 1.65 1.74 -51.95 -0.09 1.56 16 5 C -0.50 -12.37 8.74 -34.44 -0.30 -12.67 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 8 N -0.90 -21.46 11.66 55.43 0.65 -20.81 16 9 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 N -0.57 -11.49 5.35 -54.46 -0.29 -11.78 16 14 C 0.32 6.20 6.39 -151.71 -0.97 5.24 16 15 C -0.01 -0.19 8.04 -145.12 -1.17 -1.35 16 16 N 0.08 1.84 4.46 32.78 0.15 1.98 16 17 O -0.15 -3.40 18.32 -29.46 -0.54 -3.94 16 18 O -0.18 -4.00 19.24 -29.46 -0.57 -4.57 16 19 N -0.44 -8.36 11.22 -7.44 -0.08 -8.44 16 20 C 0.22 3.47 7.94 -154.45 -1.23 2.25 16 21 C -0.06 -0.62 10.21 36.00 0.37 -0.25 16 22 N -0.47 -7.59 2.57 -112.62 -0.29 -7.88 16 23 C 0.05 0.72 3.84 -4.04 -0.02 0.70 16 24 C -0.17 -2.41 9.42 37.16 0.35 -2.06 16 25 H 0.05 0.78 4.53 -51.93 -0.24 0.54 16 26 H 0.04 0.65 6.08 -51.93 -0.32 0.33 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.94 6.70 -51.93 -0.35 1.59 16 29 H 0.07 1.34 7.97 -51.93 -0.41 0.93 16 30 H 0.26 6.14 8.31 -40.82 -0.34 5.80 16 31 H 0.37 6.95 6.24 -39.30 -0.25 6.71 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.59 7.27 -51.93 -0.38 0.22 16 35 H 0.09 0.94 7.34 -51.93 -0.38 0.56 16 36 H 0.16 2.51 1.83 -51.93 -0.10 2.42 16 37 H 0.08 1.47 6.98 -51.93 -0.36 1.11 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -28.13 311.71 -8.81 -36.93 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -4.52 Total: 7.89 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.98 Total: -8.93 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.13 Total: -46.93 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -1.11 Total: -8.51 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.13 -8.81 -36.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289615753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.522 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds