Wall clock time and date at job start Tue Mar 31 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99674 * 2 1 4 4 N 1.46910 * 109.46979 * 124.99586 * 3 2 1 5 5 C 1.46896 * 110.99929 * 288.91537 * 4 3 2 6 6 C 1.50701 * 109.46683 * 160.76711 * 5 4 3 7 7 H 1.08002 * 120.00438 * 4.22091 * 6 5 4 8 8 C 1.37880 * 119.99849 * 184.22901 * 6 5 4 9 9 N 1.31515 * 120.00118 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99750 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.46990 * 90.00631 * 10 8 6 12 12 H 1.48499 * 109.47019 * 210.00223 * 10 8 6 13 13 H 1.48496 * 109.47197 * 330.00216 * 10 8 6 14 14 C 1.46900 * 110.99754 * 164.95785 * 4 3 2 15 15 C 1.50703 * 109.47199 * 288.11121 * 14 4 3 16 16 C 1.36109 * 120.12579 * 105.07932 * 15 14 4 17 17 C 1.39314 * 121.06580 * 180.22986 * 16 15 14 18 18 C 1.36176 * 120.86845 * 359.50128 * 17 16 15 19 19 C 1.40386 * 119.61323 * 0.46945 * 18 17 16 20 20 C 1.40782 * 121.37884 * 179.76098 * 19 18 17 21 21 C 1.36567 * 118.14905 * 180.02562 * 20 19 18 22 22 C 1.39341 * 119.94103 * 0.02562 * 21 20 19 23 23 N 1.31080 * 121.75436 * 0.02562 * 22 21 20 24 24 C 1.33692 * 121.32033 * 359.96111 * 23 22 21 25 25 H 1.08000 * 120.00095 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00270 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00270 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47420 * 4.99886 * 3 2 1 29 29 H 1.09003 * 109.47329 * 244.99527 * 3 2 1 30 30 H 1.08996 * 109.46754 * 280.76131 * 5 4 3 31 31 H 1.08997 * 109.47387 * 40.76353 * 5 4 3 32 32 H 0.96998 * 119.99889 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47030 * 168.11465 * 14 4 3 34 34 H 1.08999 * 109.47158 * 48.11188 * 14 4 3 35 35 H 1.07990 * 119.46558 * 359.95568 * 16 15 14 36 36 H 1.08003 * 119.56737 * 179.71968 * 17 16 15 37 37 H 1.08006 * 120.19187 * 180.26481 * 18 17 16 38 38 H 1.08001 * 120.92121 * 0.02562 * 20 19 18 39 39 H 1.08004 * 120.03031 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.12105 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3320 1.1347 5 6 2.2741 1.4675 2.4067 6 6 3.1650 1.0267 3.5394 7 1 4.1890 0.7454 3.3430 8 6 2.6726 0.9824 4.8265 9 7 3.4499 0.5972 5.8150 10 14 0.9015 1.4694 5.1663 11 1 0.0293 0.2726 5.0567 12 1 0.7974 2.0339 6.5358 13 1 0.4699 2.4889 4.1766 14 6 3.9880 2.4040 0.9754 15 6 4.9593 2.0318 -0.1150 16 6 4.8802 2.6316 -1.3343 17 6 5.7649 2.2991 -2.3578 18 6 6.7414 1.3701 -2.1629 19 6 6.8528 0.7315 -0.9177 20 6 7.8450 -0.2379 -0.6772 21 6 7.8930 -0.8179 0.5583 22 6 6.9747 -0.4450 1.5378 23 7 6.0515 0.4572 1.3102 24 6 5.9498 1.0633 0.1229 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 1.9887 2.5092 2.5532 31 1 1.3794 0.8453 2.3847 32 1 3.1036 0.5664 6.7205 33 1 4.5284 2.5410 1.9121 34 1 3.4810 3.3315 0.7094 35 1 4.1166 3.3741 -1.5125 36 1 5.6774 2.7870 -3.3173 37 1 7.4241 1.1238 -2.9627 38 1 8.5485 -0.5151 -1.4483 39 1 8.6416 -1.5655 0.7757 40 1 7.0245 -0.9125 2.5101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292063724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:46 Heat of formation + Delta-G solvation = 88.512643 kcal Electronic energy + Delta-G solvation = -21779.860598 eV Core-core repulsion = 18753.340505 eV Total energy + Delta-G solvation = -3026.520094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.56960 -37.59729 -36.47552 -33.71313 -32.89480 -32.00176 -30.29647 -30.16738 -27.73845 -26.10508 -23.97146 -23.49983 -23.15325 -20.99522 -19.98622 -19.22964 -17.96966 -16.75115 -16.64726 -16.34721 -15.23263 -14.67335 -14.53182 -14.28725 -14.01054 -13.85170 -13.51159 -13.30674 -13.20496 -12.73964 -12.62433 -12.23319 -11.92295 -11.62791 -11.43481 -11.24241 -11.09125 -10.91082 -10.54578 -10.45965 -10.36853 -10.09352 -9.81056 -9.12984 -8.93500 -8.82813 -8.50436 -8.41317 -7.89835 -7.26749 -5.89109 -3.83158 0.66992 1.09741 2.26290 2.71937 3.19594 3.36569 3.43685 3.46157 4.42025 4.54936 4.66176 4.76458 4.91965 5.01068 5.07138 5.09477 5.33875 5.35326 5.42353 5.50420 5.51635 5.61830 5.70654 5.81768 5.94460 6.03981 6.11495 6.17616 6.24472 6.30088 6.35051 6.53632 6.59316 6.68727 6.81383 6.96437 7.02078 7.06048 7.13994 7.17117 7.77294 8.03124 8.12702 8.46026 8.83735 9.35088 9.74697 11.24220 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.006108 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.166996 B = 4583.034430 C = 5621.133968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.117 4.117 3 C 0.072 3.928 4 N -0.506 5.506 5 C 0.164 3.836 6 C -0.497 4.497 7 H 0.100 0.900 8 C 0.067 3.933 9 N -0.903 5.903 10 Si 0.865 3.135 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.271 1.271 14 C 0.105 3.895 15 C -0.028 4.028 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.112 4.112 19 C -0.105 4.105 20 C -0.075 4.075 21 C -0.172 4.172 22 C 0.124 3.876 23 N -0.418 5.418 24 C 0.143 3.857 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.026 0.974 29 H 0.071 0.929 30 H -0.015 1.015 31 H 0.026 0.974 32 H 0.260 0.740 33 H 0.105 0.895 34 H 0.027 0.973 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 0.784 -16.464 17.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.135 4.135 3 C -0.056 4.056 4 N -0.229 5.229 5 C 0.038 3.962 6 C -0.536 4.536 7 H 0.118 0.882 8 C -0.134 4.134 9 N -0.543 5.543 10 Si 0.693 3.307 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.196 1.196 14 C -0.023 4.023 15 C -0.029 4.029 16 C -0.141 4.141 17 C -0.130 4.130 18 C -0.131 4.131 19 C -0.107 4.107 20 C -0.101 4.101 21 C -0.192 4.192 22 C -0.049 4.049 23 N -0.124 5.124 24 C 0.021 3.979 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.002 0.998 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.046 0.954 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.400 0.633 -15.622 16.541 hybrid contribution -0.858 0.590 -0.361 1.102 sum 4.542 1.222 -15.983 16.661 Atomic orbital electron populations 1.23693 0.95979 1.01146 1.04222 1.22890 0.95291 0.98936 0.96432 1.21305 0.94514 0.94075 0.95718 1.61866 1.14408 1.44797 1.01866 1.20210 0.94492 0.94405 0.87103 1.21269 1.00585 1.42643 0.89060 0.88237 1.24867 0.96671 0.95456 0.96358 1.69891 1.35647 1.48986 0.99824 0.87017 0.86951 0.79217 0.77471 1.20398 1.21462 1.19563 1.20899 0.92444 0.91242 0.97699 1.19796 0.94503 0.93472 0.95129 1.20775 0.99804 1.00928 0.92643 1.20785 0.95431 0.97950 0.98881 1.20840 0.99134 0.97367 0.95720 1.18878 0.97618 0.98734 0.95497 1.21313 0.96767 0.94781 0.97213 1.21935 1.01091 1.01542 0.94637 1.23135 0.89397 0.93114 0.99288 1.68332 1.18164 1.05991 1.19908 1.18770 0.94182 0.95707 0.89288 0.88866 0.89246 0.87243 0.95558 0.91086 0.99784 0.95619 0.93041 0.87687 0.95446 0.85944 0.86122 0.85979 0.85177 0.85102 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.35 14.32 29.01 0.42 -2.94 16 2 C -0.12 -2.06 8.70 -36.03 -0.31 -2.37 16 3 C 0.07 1.30 5.25 -4.97 -0.03 1.27 16 4 N -0.51 -10.82 4.33 -238.96 -1.03 -11.85 16 5 C 0.16 4.07 3.65 -4.98 -0.02 4.05 16 6 C -0.50 -14.28 9.09 -34.44 -0.31 -14.60 16 7 H 0.10 3.09 7.95 -52.49 -0.42 2.67 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 10 Si 0.87 22.08 27.39 -169.99 -4.66 17.43 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.27 -6.70 6.67 56.52 0.38 -6.32 16 14 C 0.10 2.06 4.55 -4.97 -0.02 2.03 16 15 C -0.03 -0.48 4.72 -104.51 -0.49 -0.97 16 16 C -0.12 -1.68 8.67 -39.95 -0.35 -2.02 16 17 C -0.11 -1.34 9.95 -39.92 -0.40 -1.73 16 18 C -0.11 -1.36 9.77 -39.52 -0.39 -1.75 16 19 C -0.11 -1.56 5.74 -106.80 -0.61 -2.17 16 20 C -0.07 -0.93 9.90 -39.22 -0.39 -1.32 16 21 C -0.17 -2.21 10.03 -39.77 -0.40 -2.61 16 22 C 0.12 2.04 11.15 -17.46 -0.19 1.84 16 23 N -0.42 -8.30 9.70 -10.97 -0.11 -8.40 16 24 C 0.14 2.57 6.59 -84.85 -0.56 2.01 16 25 H 0.09 1.32 8.06 -52.49 -0.42 0.89 16 26 H 0.09 1.34 7.84 -52.49 -0.41 0.93 16 27 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.03 0.46 7.72 -51.93 -0.40 0.06 16 29 H 0.07 1.17 6.48 -51.93 -0.34 0.83 16 30 H -0.02 -0.39 7.36 -51.93 -0.38 -0.77 16 31 H 0.03 0.65 6.29 -51.93 -0.33 0.33 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.11 2.38 7.13 -51.93 -0.37 2.01 16 34 H 0.03 0.49 7.83 -51.93 -0.41 0.08 16 35 H 0.12 1.46 7.96 -52.49 -0.42 1.04 16 36 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -32.80 335.06 -9.71 -42.51 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.59 Total: 1.93 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -4.15 Total: -19.41 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.37 Total: -47.51 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.66 Total: 17.43 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.80 -9.71 -42.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292063724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.026 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds