Wall clock time and date at job start Tue Mar 31 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99674 * 2 1 4 4 N 1.46910 * 109.46979 * 124.99586 * 3 2 1 5 5 C 1.46896 * 110.99929 * 288.91537 * 4 3 2 6 6 C 1.50701 * 109.46683 * 160.76711 * 5 4 3 7 7 H 1.08002 * 120.00438 * 4.22091 * 6 5 4 8 8 C 1.37880 * 119.99849 * 184.22901 * 6 5 4 9 9 N 1.31515 * 120.00118 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99750 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.46990 * 90.00631 * 10 8 6 12 12 H 1.48499 * 109.47019 * 210.00223 * 10 8 6 13 13 H 1.48496 * 109.47197 * 330.00216 * 10 8 6 14 14 C 1.46900 * 110.99754 * 164.95785 * 4 3 2 15 15 C 1.50703 * 109.47199 * 288.11121 * 14 4 3 16 16 C 1.36109 * 120.12579 * 105.07932 * 15 14 4 17 17 C 1.39314 * 121.06580 * 180.22986 * 16 15 14 18 18 C 1.36176 * 120.86845 * 359.50128 * 17 16 15 19 19 C 1.40386 * 119.61323 * 0.46945 * 18 17 16 20 20 C 1.40782 * 121.37884 * 179.76098 * 19 18 17 21 21 C 1.36567 * 118.14905 * 180.02562 * 20 19 18 22 22 C 1.39341 * 119.94103 * 0.02562 * 21 20 19 23 23 N 1.31080 * 121.75436 * 0.02562 * 22 21 20 24 24 C 1.33692 * 121.32033 * 359.96111 * 23 22 21 25 25 H 1.08000 * 120.00095 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00270 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00270 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47420 * 4.99886 * 3 2 1 29 29 H 1.09003 * 109.47329 * 244.99527 * 3 2 1 30 30 H 1.08996 * 109.46754 * 280.76131 * 5 4 3 31 31 H 1.08997 * 109.47387 * 40.76353 * 5 4 3 32 32 H 0.96998 * 119.99889 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47030 * 168.11465 * 14 4 3 34 34 H 1.08999 * 109.47158 * 48.11188 * 14 4 3 35 35 H 1.07990 * 119.46558 * 359.95568 * 16 15 14 36 36 H 1.08003 * 119.56737 * 179.71968 * 17 16 15 37 37 H 1.08006 * 120.19187 * 180.26481 * 18 17 16 38 38 H 1.08001 * 120.92121 * 0.02562 * 20 19 18 39 39 H 1.08004 * 120.03031 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.12105 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3320 1.1347 5 6 2.2741 1.4675 2.4067 6 6 3.1650 1.0267 3.5394 7 1 4.1890 0.7454 3.3430 8 6 2.6726 0.9824 4.8265 9 7 3.4499 0.5972 5.8150 10 14 0.9015 1.4694 5.1663 11 1 0.0293 0.2726 5.0567 12 1 0.7974 2.0339 6.5358 13 1 0.4699 2.4889 4.1766 14 6 3.9880 2.4040 0.9754 15 6 4.9593 2.0318 -0.1150 16 6 4.8802 2.6316 -1.3343 17 6 5.7649 2.2991 -2.3578 18 6 6.7414 1.3701 -2.1629 19 6 6.8528 0.7315 -0.9177 20 6 7.8450 -0.2379 -0.6772 21 6 7.8930 -0.8179 0.5583 22 6 6.9747 -0.4450 1.5378 23 7 6.0515 0.4572 1.3102 24 6 5.9498 1.0633 0.1229 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 1.9887 2.5092 2.5532 31 1 1.3794 0.8453 2.3847 32 1 3.1036 0.5664 6.7205 33 1 4.5284 2.5410 1.9121 34 1 3.4810 3.3315 0.7094 35 1 4.1166 3.3741 -1.5125 36 1 5.6774 2.7870 -3.3173 37 1 7.4241 1.1238 -2.9627 38 1 8.5485 -0.5151 -1.4483 39 1 8.6416 -1.5655 0.7757 40 1 7.0245 -0.9125 2.5101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292063724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:45 Heat of formation + Delta-G solvation = 67.563898 kcal Electronic energy + Delta-G solvation = -21780.769004 eV Core-core repulsion = 18753.340505 eV Total energy + Delta-G solvation = -3027.428499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.69125 -39.04511 -37.69311 -34.95840 -34.77049 -33.63644 -31.53918 -31.32162 -29.61701 -27.44690 -25.38647 -24.89165 -24.32614 -22.61152 -21.35389 -20.63298 -19.04755 -18.82472 -17.76808 -17.57503 -16.87469 -16.21497 -15.96065 -15.56429 -15.35893 -15.18279 -14.93459 -14.68898 -14.56349 -14.22290 -13.95795 -13.77505 -13.42267 -13.05000 -12.86130 -12.59953 -12.51085 -12.38107 -12.15981 -11.94929 -11.86721 -11.83567 -11.41593 -11.18800 -10.70156 -10.25464 -10.04932 -9.59735 -9.03531 -8.89092 -8.17642 -6.16979 -0.39282 0.00188 1.17226 1.33082 1.33894 1.40875 1.44477 2.13459 2.38746 3.12319 3.21541 3.48989 3.61043 3.68620 3.92679 4.01492 4.12050 4.16802 4.23550 4.29192 4.35175 4.41672 4.56020 4.59191 4.68310 4.69426 4.78560 4.94707 4.96960 5.07787 5.09854 5.19546 5.24250 5.28502 5.54806 5.57281 5.65138 5.72280 5.77876 5.81450 6.07816 6.17064 6.44966 6.76871 6.99864 7.30035 7.44478 8.99108 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.006108 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.166996 B = 4583.034430 C = 5621.133968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.147 4.147 3 C 0.078 3.922 4 N -0.522 5.522 5 C 0.178 3.822 6 C -0.500 4.500 7 H 0.059 0.941 8 C 0.006 3.994 9 N -0.950 5.950 10 Si 0.936 3.064 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.255 1.255 14 C 0.116 3.884 15 C -0.069 4.069 16 C -0.104 4.104 17 C -0.112 4.112 18 C -0.098 4.098 19 C -0.122 4.122 20 C -0.062 4.062 21 C -0.172 4.172 22 C 0.101 3.899 23 N -0.483 5.483 24 C 0.112 3.888 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.035 0.965 29 H 0.086 0.914 30 H -0.020 1.020 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.177 0.823 39 H 0.167 0.833 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 1.250 -20.346 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.166 4.166 3 C -0.050 4.050 4 N -0.245 5.245 5 C 0.051 3.949 6 C -0.539 4.539 7 H 0.078 0.922 8 C -0.190 4.190 9 N -0.593 5.593 10 Si 0.761 3.239 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.180 1.180 14 C -0.012 4.012 15 C -0.070 4.070 16 C -0.124 4.124 17 C -0.130 4.130 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.087 4.087 21 C -0.192 4.192 22 C -0.071 4.071 23 N -0.190 5.190 24 C -0.010 4.010 25 H 0.129 0.871 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.053 0.947 29 H 0.105 0.895 30 H -0.002 1.002 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.160 0.840 36 H 0.181 0.819 37 H 0.182 0.818 38 H 0.195 0.805 39 H 0.185 0.815 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.888 1.102 -19.533 20.165 hybrid contribution -0.583 0.425 0.745 1.037 sum 4.304 1.527 -18.788 19.335 Atomic orbital electron populations 1.23942 0.95263 1.02623 1.01017 1.22844 0.96104 0.98213 0.99406 1.21311 0.94183 0.94668 0.94803 1.61718 1.15138 1.46111 1.01543 1.19885 0.93671 0.93509 0.87840 1.21489 0.99701 1.41862 0.90858 0.92245 1.25744 1.01604 0.95611 0.96045 1.70060 1.38036 1.50812 1.00347 0.85880 0.80976 0.79412 0.77656 1.19419 1.20927 1.17952 1.20653 0.92296 0.91389 0.96841 1.19665 0.95313 0.96042 0.95954 1.21073 1.00057 0.99744 0.91573 1.21222 0.94327 0.97704 0.99747 1.21342 0.99209 0.95859 0.95231 1.19238 0.97606 0.99747 0.95851 1.21843 0.96203 0.92923 0.97755 1.22155 1.00722 1.02208 0.94082 1.23275 0.90368 0.93201 1.00285 1.68201 1.20512 1.08109 1.22160 1.19082 0.95722 0.96441 0.89781 0.87096 0.87960 0.88613 0.94700 0.89538 1.00244 0.95714 0.92940 0.92608 0.94099 0.83987 0.81943 0.81767 0.80522 0.81543 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.59 14.32 67.78 0.97 -4.62 16 2 C -0.15 -5.07 8.70 25.64 0.22 -4.85 16 3 C 0.08 2.76 5.25 85.55 0.45 3.21 16 4 N -0.52 -23.17 4.33 -909.92 -3.94 -27.11 16 5 C 0.18 9.11 3.65 85.56 0.31 9.42 16 6 C -0.50 -30.55 9.09 25.60 0.23 -30.32 16 7 H 0.06 4.04 7.95 -2.91 -0.02 4.02 16 8 C 0.01 0.36 5.47 84.66 0.46 0.82 16 9 N -0.95 -62.02 13.96 21.45 0.30 -61.72 16 10 Si 0.94 46.55 27.39 68.60 1.88 48.43 16 11 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.26 -11.97 6.67 99.48 0.66 -11.31 16 14 C 0.12 4.80 4.55 85.56 0.39 5.19 16 15 C -0.07 -2.42 4.72 -19.79 -0.09 -2.52 16 16 C -0.10 -2.68 8.67 22.03 0.19 -2.48 16 17 C -0.11 -2.19 9.95 22.05 0.22 -1.97 16 18 C -0.10 -1.97 9.77 22.31 0.22 -1.75 16 19 C -0.12 -3.42 5.74 -21.28 -0.12 -3.54 16 20 C -0.06 -1.38 9.90 22.50 0.22 -1.16 16 21 C -0.17 -4.33 10.03 22.14 0.22 -4.11 16 22 C 0.10 3.63 11.15 85.07 0.95 4.58 16 23 N -0.48 -20.94 9.70 -188.63 -1.83 -22.77 16 24 C 0.11 4.17 6.59 40.29 0.27 4.43 16 25 H 0.11 2.83 8.06 -2.91 -0.02 2.81 16 26 H 0.10 2.74 7.84 -2.91 -0.02 2.72 16 27 H 0.10 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.03 1.17 7.72 -2.39 -0.02 1.16 16 29 H 0.09 2.75 6.48 -2.39 -0.02 2.74 16 30 H -0.02 -1.03 7.36 -2.39 -0.02 -1.05 16 31 H 0.02 1.27 6.29 -2.39 -0.02 1.25 16 32 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 33 H 0.06 2.80 7.13 -2.39 -0.02 2.79 16 34 H 0.04 1.51 7.83 -2.39 -0.02 1.49 16 35 H 0.14 2.98 7.96 -2.92 -0.02 2.96 16 36 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 37 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.15 5.15 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -78.39 335.06 2.49 -75.90 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.97 Total: 16.95 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 5.11 Total: -29.68 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -5.47 Total: -111.60 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.43 kcal Total: -78.39 2.49 -75.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292063724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.465 kcal (2) G-P(sol) polarization free energy of solvation -78.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds