Wall clock time and date at job start Tue Mar 31 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50692 * 119.99951 * 2 1 4 4 N 1.46902 * 109.47359 * 124.99689 * 3 2 1 5 5 C 1.46900 * 110.99908 * 289.29212 * 4 3 2 6 6 C 1.50702 * 109.46885 * 160.90244 * 5 4 3 7 7 H 1.08001 * 120.00266 * 354.94909 * 6 5 4 8 8 C 1.37874 * 119.99732 * 174.94590 * 6 5 4 9 9 N 1.31519 * 120.00194 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99807 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47248 * 90.00299 * 10 8 6 12 12 H 1.48501 * 109.47001 * 210.00216 * 10 8 6 13 13 H 1.48496 * 109.47090 * 329.99749 * 10 8 6 14 14 C 1.46898 * 110.99921 * 165.33735 * 4 3 2 15 15 C 1.50701 * 109.47359 * 293.95189 * 14 4 3 16 16 C 1.39360 * 119.56719 * 270.25409 * 15 14 4 17 17 C 1.36073 * 121.06369 * 180.24292 * 16 15 14 18 18 C 1.40596 * 119.74663 * 359.48543 * 17 16 15 19 19 N 1.33685 * 121.06537 * 180.30094 * 18 17 16 20 20 C 1.31090 * 121.31813 * 180.02562 * 19 18 17 21 21 C 1.39329 * 121.74624 * 359.94785 * 20 19 18 22 22 C 1.36577 * 119.93894 * 0.02562 * 21 20 19 23 23 C 1.40776 * 118.15085 * 0.02562 * 22 21 20 24 24 C 1.36144 * 119.56363 * 89.99984 * 15 14 4 25 25 H 1.07998 * 120.00323 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.99732 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99632 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47413 * 4.99446 * 3 2 1 29 29 H 1.09002 * 109.47098 * 244.99284 * 3 2 1 30 30 H 1.09001 * 109.47024 * 280.90026 * 5 4 3 31 31 H 1.08996 * 109.46991 * 40.90606 * 5 4 3 32 32 H 0.96999 * 119.99930 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47220 * 173.95444 * 14 4 3 34 34 H 1.09000 * 109.47273 * 53.95490 * 14 4 3 35 35 H 1.08002 * 119.46655 * 0.02562 * 16 15 14 36 36 H 1.08002 * 120.12772 * 179.75835 * 17 16 15 37 37 H 1.07999 * 119.12590 * 180.02562 * 20 19 18 38 38 H 1.07997 * 120.03292 * 180.02562 * 21 20 19 39 39 H 1.07996 * 120.92535 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.19238 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3320 1.1346 5 6 2.2737 1.4586 2.4073 6 6 3.1681 1.0207 3.5384 7 1 4.1425 0.6059 3.3268 8 6 2.7424 1.1499 4.8434 9 7 1.5556 1.6547 5.1011 10 14 3.8513 0.6078 6.2455 11 1 4.7028 1.7472 6.6720 12 1 3.0184 0.1569 7.3893 13 1 4.7141 -0.5116 5.7898 14 6 3.9825 2.4096 0.9797 15 6 4.8668 2.1149 -0.2045 16 6 6.0352 1.3772 -0.0235 17 6 6.8584 1.0977 -1.0704 18 6 6.5249 1.5485 -2.3597 19 7 7.3113 1.2838 -3.4079 20 6 7.0054 1.7021 -4.6120 21 6 5.8497 2.4397 -4.8603 22 6 5.0020 2.7446 -3.8338 23 6 5.3343 2.2946 -2.5420 24 6 4.5111 2.5685 -1.4379 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4025 -0.9313 30 1 1.9808 2.4978 2.5570 31 1 1.3836 0.8299 2.3837 32 1 1.2560 1.7452 6.0192 33 1 4.5923 2.4763 1.8807 34 1 3.4651 3.3556 0.8203 35 1 6.2933 1.0246 0.9642 36 1 7.7622 0.5280 -0.9123 37 1 7.6661 1.4677 -5.4335 38 1 5.6244 2.7701 -5.8635 39 1 4.1021 3.3157 -4.0082 40 1 3.6013 3.1361 -1.5662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292332542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:36 Heat of formation + Delta-G solvation = 78.212120 kcal Electronic energy + Delta-G solvation = -21134.281662 eV Core-core repulsion = 18107.314904 eV Total energy + Delta-G solvation = -3026.966758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77216 -38.08912 -36.26171 -33.47674 -33.20619 -32.44593 -30.61286 -30.08387 -27.28643 -26.42797 -24.07184 -23.83842 -22.42687 -21.96351 -20.52977 -19.17917 -17.95532 -16.84368 -16.66009 -16.39556 -15.24743 -14.69817 -14.61379 -14.34640 -14.23375 -14.08214 -13.93785 -13.38583 -13.21701 -13.06852 -12.69925 -12.16911 -11.84793 -11.56928 -11.43240 -11.26648 -11.11273 -10.88081 -10.65513 -10.57739 -10.52911 -10.40925 -9.96352 -9.50197 -9.28627 -8.86026 -8.60391 -8.43056 -8.09637 -7.33721 -6.03504 -4.05150 0.45223 0.88246 2.06798 2.76670 3.01265 3.30681 3.37516 3.41562 4.16492 4.31135 4.42136 4.59790 4.73978 4.86137 4.91290 5.09089 5.16398 5.27178 5.31664 5.45317 5.50250 5.55780 5.66200 5.80267 5.87082 5.97633 6.01787 6.10700 6.13631 6.17902 6.38238 6.40940 6.45258 6.57113 6.80091 6.98116 7.07795 7.18926 7.23024 7.32929 7.80466 7.91410 8.06292 8.13019 8.49807 9.02989 9.59275 11.06835 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.004309 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.601799 B = 6497.005582 C = 7462.187016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C 0.071 3.929 4 N -0.525 5.525 5 C 0.192 3.808 6 C -0.506 4.506 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.094 3.906 15 C -0.050 4.050 16 C -0.069 4.069 17 C -0.102 4.102 18 C 0.121 3.879 19 N -0.474 5.474 20 C 0.119 3.881 21 C -0.184 4.184 22 C -0.058 4.058 23 C -0.097 4.097 24 C -0.105 4.105 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.027 0.973 29 H 0.073 0.927 30 H -0.004 1.004 31 H 0.034 0.966 32 H 0.261 0.739 33 H 0.096 0.904 34 H 0.032 0.968 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.154 0.846 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 2.310 -17.422 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.139 4.139 3 C -0.057 4.057 4 N -0.250 5.250 5 C 0.068 3.932 6 C -0.545 4.545 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.197 1.197 14 C -0.034 4.034 15 C -0.050 4.050 16 C -0.090 4.090 17 C -0.121 4.121 18 C 0.000 4.000 19 N -0.182 5.182 20 C -0.054 4.054 21 C -0.203 4.203 22 C -0.084 4.084 23 C -0.099 4.099 24 C -0.125 4.125 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.014 0.986 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.051 0.949 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.171 0.829 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.713 1.410 -16.974 18.308 hybrid contribution -0.835 0.946 0.664 1.426 sum 5.878 2.356 -16.310 17.496 Atomic orbital electron populations 1.23683 0.95967 1.01160 1.03665 1.22830 0.95326 0.98724 0.96982 1.21328 0.94457 0.94278 0.95653 1.62130 1.15707 1.43931 1.03210 1.19794 0.93903 0.95752 0.83790 1.21158 1.02657 1.40709 0.89931 0.91813 1.24985 0.95232 0.95463 0.98885 1.69959 1.18492 1.45553 1.19819 0.86532 0.80436 0.78956 0.81716 1.20745 1.21319 1.19745 1.21070 0.94112 0.92593 0.95601 1.19928 0.94939 0.95065 0.95101 1.20960 0.92979 0.95408 0.99604 1.20774 1.00533 1.00628 0.90172 1.18874 0.91204 0.96559 0.93336 1.68009 1.31037 1.19862 0.99319 1.22857 0.94844 0.93358 0.94304 1.21798 0.96634 1.01680 1.00238 1.21460 0.98799 0.96485 0.91652 1.18796 0.96422 1.00138 0.94581 1.20874 0.98943 1.01137 0.91532 0.88932 0.89180 0.87375 0.95452 0.90938 0.98619 0.94837 0.92952 0.88526 0.94940 0.84632 0.84915 0.82858 0.84939 0.84714 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.31 14.32 29.01 0.42 -2.90 16 2 C -0.12 -2.10 8.68 -36.03 -0.31 -2.41 16 3 C 0.07 1.26 5.23 -4.98 -0.03 1.23 16 4 N -0.53 -10.80 4.37 -238.97 -1.05 -11.85 16 5 C 0.19 4.84 4.59 -4.98 -0.02 4.82 16 6 C -0.51 -13.78 8.52 -34.44 -0.29 -14.07 16 7 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 10 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.09 1.70 4.92 -4.98 -0.02 1.68 16 15 C -0.05 -0.78 4.92 -104.96 -0.52 -1.29 16 16 C -0.07 -1.04 9.58 -39.94 -0.38 -1.43 16 17 C -0.10 -1.47 9.98 -39.47 -0.39 -1.87 16 18 C 0.12 1.79 6.60 -84.86 -0.56 1.23 16 19 N -0.47 -6.66 10.34 -10.97 -0.11 -6.77 16 20 C 0.12 1.29 11.15 -17.46 -0.19 1.09 16 21 C -0.18 -1.75 10.03 -39.78 -0.40 -2.15 16 22 C -0.06 -0.63 9.90 -39.22 -0.39 -1.02 16 23 C -0.10 -1.34 5.74 -106.80 -0.61 -1.95 16 24 C -0.11 -1.48 7.51 -39.51 -0.30 -1.77 16 25 H 0.09 1.33 8.06 -52.49 -0.42 0.90 16 26 H 0.09 1.39 7.84 -52.48 -0.41 0.98 16 27 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 28 H 0.03 0.49 7.72 -51.93 -0.40 0.09 16 29 H 0.07 1.17 5.18 -51.93 -0.27 0.90 16 30 H 0.00 -0.11 8.01 -51.93 -0.42 -0.53 16 31 H 0.03 0.91 7.07 -51.93 -0.37 0.54 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.10 1.88 7.35 -51.93 -0.38 1.50 16 34 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 35 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 36 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.13 1.56 7.74 -52.49 -0.41 1.16 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -30.70 337.49 -10.04 -40.74 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.58 Total: 1.46 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -4.11 Total: -19.36 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.42 Total: -44.19 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.70 -10.04 -40.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292332542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.949 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds