Wall clock time and date at job start Tue Mar 31 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50692 * 119.99951 * 2 1 4 4 N 1.46902 * 109.47359 * 124.99689 * 3 2 1 5 5 C 1.46900 * 110.99908 * 289.29212 * 4 3 2 6 6 C 1.50702 * 109.46885 * 160.90244 * 5 4 3 7 7 H 1.08001 * 120.00266 * 354.94909 * 6 5 4 8 8 C 1.37874 * 119.99732 * 174.94590 * 6 5 4 9 9 N 1.31519 * 120.00194 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99807 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47248 * 90.00299 * 10 8 6 12 12 H 1.48501 * 109.47001 * 210.00216 * 10 8 6 13 13 H 1.48496 * 109.47090 * 329.99749 * 10 8 6 14 14 C 1.46898 * 110.99921 * 165.33735 * 4 3 2 15 15 C 1.50701 * 109.47359 * 293.95189 * 14 4 3 16 16 C 1.39360 * 119.56719 * 270.25409 * 15 14 4 17 17 C 1.36073 * 121.06369 * 180.24292 * 16 15 14 18 18 C 1.40596 * 119.74663 * 359.48543 * 17 16 15 19 19 N 1.33685 * 121.06537 * 180.30094 * 18 17 16 20 20 C 1.31090 * 121.31813 * 180.02562 * 19 18 17 21 21 C 1.39329 * 121.74624 * 359.94785 * 20 19 18 22 22 C 1.36577 * 119.93894 * 0.02562 * 21 20 19 23 23 C 1.40776 * 118.15085 * 0.02562 * 22 21 20 24 24 C 1.36144 * 119.56363 * 89.99984 * 15 14 4 25 25 H 1.07998 * 120.00323 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.99732 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99632 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47413 * 4.99446 * 3 2 1 29 29 H 1.09002 * 109.47098 * 244.99284 * 3 2 1 30 30 H 1.09001 * 109.47024 * 280.90026 * 5 4 3 31 31 H 1.08996 * 109.46991 * 40.90606 * 5 4 3 32 32 H 0.96999 * 119.99930 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.47220 * 173.95444 * 14 4 3 34 34 H 1.09000 * 109.47273 * 53.95490 * 14 4 3 35 35 H 1.08002 * 119.46655 * 0.02562 * 16 15 14 36 36 H 1.08002 * 120.12772 * 179.75835 * 17 16 15 37 37 H 1.07999 * 119.12590 * 180.02562 * 20 19 18 38 38 H 1.07997 * 120.03292 * 180.02562 * 21 20 19 39 39 H 1.07996 * 120.92535 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.19238 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3320 1.1346 5 6 2.2737 1.4586 2.4073 6 6 3.1681 1.0207 3.5384 7 1 4.1425 0.6059 3.3268 8 6 2.7424 1.1499 4.8434 9 7 1.5556 1.6547 5.1011 10 14 3.8513 0.6078 6.2455 11 1 4.7028 1.7472 6.6720 12 1 3.0184 0.1569 7.3893 13 1 4.7141 -0.5116 5.7898 14 6 3.9825 2.4096 0.9797 15 6 4.8668 2.1149 -0.2045 16 6 6.0352 1.3772 -0.0235 17 6 6.8584 1.0977 -1.0704 18 6 6.5249 1.5485 -2.3597 19 7 7.3113 1.2838 -3.4079 20 6 7.0054 1.7021 -4.6120 21 6 5.8497 2.4397 -4.8603 22 6 5.0020 2.7446 -3.8338 23 6 5.3343 2.2946 -2.5420 24 6 4.5111 2.5685 -1.4379 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4025 -0.9313 30 1 1.9808 2.4978 2.5570 31 1 1.3836 0.8299 2.3837 32 1 1.2560 1.7452 6.0192 33 1 4.5923 2.4763 1.8807 34 1 3.4651 3.3556 0.8203 35 1 6.2933 1.0246 0.9642 36 1 7.7622 0.5280 -0.9123 37 1 7.6661 1.4677 -5.4335 38 1 5.6244 2.7701 -5.8635 39 1 4.1021 3.3157 -4.0082 40 1 3.6013 3.1361 -1.5662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292332542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:36 Heat of formation + Delta-G solvation = 60.700218 kcal Electronic energy + Delta-G solvation = -21135.041035 eV Core-core repulsion = 18107.314904 eV Total energy + Delta-G solvation = -3027.726131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.76140 -39.40975 -37.55291 -34.97966 -34.44152 -34.07706 -31.85085 -31.14088 -29.15354 -27.69898 -25.66860 -24.89731 -23.76438 -23.02751 -22.09353 -20.58528 -18.97205 -18.50274 -17.75786 -17.70101 -16.90022 -16.15606 -16.05556 -15.66778 -15.38632 -15.24615 -15.09099 -14.71832 -14.59308 -14.06739 -13.96194 -13.84808 -13.38709 -13.00779 -12.83147 -12.68008 -12.55068 -12.43867 -12.33982 -12.12258 -11.95179 -11.71006 -11.47061 -11.30776 -10.59631 -10.42038 -10.20384 -9.62314 -9.20628 -8.98395 -8.17114 -6.26600 -0.51003 -0.10399 1.07318 1.41317 1.42160 1.43643 1.54395 1.99230 2.42159 3.13383 3.15336 3.40416 3.50127 3.66690 3.80261 3.88381 4.05990 4.11144 4.15060 4.25481 4.28977 4.49946 4.53854 4.57762 4.63809 4.74293 4.83367 4.88828 5.02512 5.08083 5.13297 5.18172 5.21503 5.29096 5.39279 5.64527 5.64947 5.68712 5.73919 5.87059 5.94200 6.12455 6.34011 6.62249 6.89521 6.99952 7.42887 8.93036 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.004309 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.601799 B = 6497.005582 C = 7462.187016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 C 0.075 3.925 4 N -0.532 5.532 5 C 0.210 3.790 6 C -0.518 4.518 7 H 0.062 0.938 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.101 3.899 15 C -0.069 4.069 16 C -0.082 4.082 17 C -0.107 4.107 18 C 0.102 3.898 19 N -0.508 5.508 20 C 0.123 3.877 21 C -0.171 4.171 22 C -0.062 4.062 23 C -0.114 4.114 24 C -0.094 4.094 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.025 0.975 29 H 0.092 0.908 30 H -0.033 1.033 31 H 0.009 0.991 32 H 0.263 0.737 33 H 0.074 0.926 34 H 0.035 0.965 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.189 0.811 38 H 0.175 0.825 39 H 0.164 0.836 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.418 2.430 -19.962 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.164 4.164 3 C -0.053 4.053 4 N -0.256 5.256 5 C 0.085 3.915 6 C -0.557 4.557 7 H 0.080 0.920 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C -0.026 4.026 15 C -0.070 4.070 16 C -0.103 4.103 17 C -0.125 4.125 18 C -0.018 4.018 19 N -0.216 5.216 20 C -0.050 4.050 21 C -0.190 4.190 22 C -0.088 4.088 23 C -0.116 4.116 24 C -0.113 4.113 25 H 0.129 0.871 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.044 0.956 29 H 0.110 0.890 30 H -0.016 1.016 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.206 0.794 38 H 0.192 0.808 39 H 0.181 0.819 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.311 1.531 -19.533 20.913 hybrid contribution -1.003 0.937 1.208 1.829 sum 6.307 2.468 -18.325 19.537 Atomic orbital electron populations 1.23904 0.95558 1.02323 1.01303 1.22862 0.96004 0.98376 0.99165 1.21358 0.94170 0.94545 0.95202 1.62018 1.16081 1.45174 1.02315 1.19386 0.93130 0.93132 0.85899 1.21463 1.02769 1.40457 0.90969 0.92023 1.25837 0.96583 0.95426 1.01539 1.70082 1.20230 1.46725 1.20452 0.85469 0.78583 0.78810 0.78298 1.19839 1.20967 1.19040 1.20926 0.93572 0.92010 0.96108 1.19640 0.95200 0.97371 0.94757 1.20900 0.93434 0.96238 0.99682 1.20869 1.00635 1.00707 0.90336 1.19058 0.92011 0.97116 0.93662 1.68042 1.31746 1.21544 1.00299 1.23613 0.95585 0.91736 0.94043 1.22264 0.95193 0.99785 1.01808 1.21851 1.00097 0.96282 0.90557 1.18994 0.96159 1.00618 0.95816 1.21004 0.99265 1.00111 0.90959 0.87055 0.88696 0.87756 0.95645 0.88991 1.01573 0.97245 0.92819 0.90794 0.94685 0.85312 0.84186 0.79436 0.80768 0.81895 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.04 14.32 67.78 0.97 -5.07 16 2 C -0.15 -5.09 8.68 25.64 0.22 -4.87 16 3 C 0.07 2.67 5.23 85.55 0.45 3.12 16 4 N -0.53 -22.62 4.37 -909.95 -3.98 -26.60 16 5 C 0.21 11.06 4.59 85.56 0.39 11.45 16 6 C -0.52 -29.12 8.52 25.60 0.22 -28.90 16 7 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 8 C 0.00 0.23 5.46 84.65 0.46 0.69 16 9 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 10 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 C 0.10 3.83 4.92 85.56 0.42 4.25 16 15 C -0.07 -2.21 4.92 -20.08 -0.10 -2.31 16 16 C -0.08 -2.58 9.58 22.04 0.21 -2.37 16 17 C -0.11 -3.13 9.98 22.34 0.22 -2.91 16 18 C 0.10 2.93 6.60 40.29 0.27 3.20 16 19 N -0.51 -13.37 10.34 -188.63 -1.95 -15.32 16 20 C 0.12 2.22 11.15 85.07 0.95 3.16 16 21 C -0.17 -2.49 10.03 22.14 0.22 -2.26 16 22 C -0.06 -1.13 9.90 22.50 0.22 -0.91 16 23 C -0.11 -2.93 5.74 -21.28 -0.12 -3.05 16 24 C -0.09 -2.55 7.51 22.31 0.17 -2.39 16 25 H 0.11 3.02 8.06 -2.91 -0.02 3.00 16 26 H 0.09 2.86 7.84 -2.91 -0.02 2.83 16 27 H 0.10 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.03 0.92 7.72 -2.39 -0.02 0.90 16 29 H 0.09 2.90 5.18 -2.39 -0.01 2.89 16 30 H -0.03 -1.92 8.01 -2.39 -0.02 -1.94 16 31 H 0.01 0.54 7.07 -2.39 -0.02 0.52 16 32 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 33 H 0.07 3.07 7.35 -2.39 -0.02 3.05 16 34 H 0.04 1.28 8.05 -2.39 -0.02 1.26 16 35 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 36 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 37 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 39 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 40 H 0.14 3.28 7.74 -2.91 -0.02 3.26 16 Total: -1.00 -68.14 337.49 2.57 -65.57 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 1.01 Total: 14.89 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 5.17 Total: -29.16 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -5.65 Total: -97.63 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -68.14 2.57 -65.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292332542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.275 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds