Wall clock time and date at job start Tue Mar 31 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 119.99943 * 2 1 4 4 N 1.46908 * 109.47126 * 124.15877 * 3 2 1 5 5 C 1.46898 * 110.99695 * 300.63049 * 4 3 2 6 6 C 1.50707 * 109.46946 * 288.28049 * 5 4 3 7 7 H 1.07999 * 119.99923 * 356.06695 * 6 5 4 8 8 C 1.37873 * 120.00025 * 176.06572 * 6 5 4 9 9 N 1.31514 * 120.00078 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99963 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47111 * 89.99732 * 10 8 6 12 12 H 1.48499 * 109.47245 * 209.99833 * 10 8 6 13 13 H 1.48505 * 109.47202 * 330.00130 * 10 8 6 14 14 C 1.46901 * 110.99720 * 64.58053 * 4 3 2 15 15 C 1.50693 * 109.47248 * 66.05136 * 14 4 3 16 16 C 1.39332 * 120.03330 * 270.19967 * 15 14 4 17 17 N 1.31086 * 121.75009 * 180.24100 * 16 15 14 18 18 C 1.33676 * 121.32412 * 359.78941 * 17 16 15 19 19 C 1.40598 * 121.08524 * 179.97438 * 18 17 16 20 20 C 1.36072 * 119.75079 * 180.02562 * 19 18 17 21 21 C 1.39360 * 121.07044 * 359.95748 * 20 19 18 22 22 C 1.36142 * 120.86470 * 0.02562 * 21 20 19 23 23 C 1.40427 * 119.61038 * 0.02562 * 22 21 20 24 24 C 1.36580 * 120.03817 * 89.99286 * 15 14 4 25 25 H 1.08006 * 120.00202 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.00062 * 179.97438 * 1 2 3 27 27 H 1.08006 * 120.00202 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47589 * 4.16105 * 3 2 1 29 29 H 1.08997 * 109.47530 * 244.15443 * 3 2 1 30 30 H 1.08995 * 109.47261 * 48.28039 * 5 4 3 31 31 H 1.08998 * 109.46869 * 168.28335 * 5 4 3 32 32 H 0.97004 * 119.99709 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.47256 * 306.04671 * 14 4 3 34 34 H 1.09001 * 109.46880 * 186.04863 * 14 4 3 35 35 H 1.07998 * 119.12502 * 0.02562 * 16 15 14 36 36 H 1.08005 * 120.12017 * 0.03413 * 19 18 17 37 37 H 1.07998 * 119.46506 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.56845 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.19153 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.92341 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9818 1.3403 1.1461 5 6 2.2490 1.2053 2.4121 6 6 1.4811 2.4729 2.6857 7 1 1.5821 3.3192 2.0225 8 6 0.6498 2.5521 3.7828 9 7 -0.0207 3.6580 4.0213 10 14 0.4757 1.0884 4.9303 11 1 1.4946 1.1795 6.0069 12 1 -0.8818 1.0900 5.5322 13 1 0.6761 -0.1679 4.1642 14 6 4.0164 0.3047 1.0236 15 6 4.9021 0.6164 -0.1550 16 6 4.5822 0.1219 -1.4178 17 7 5.3310 0.3683 -2.4651 18 6 6.4378 1.1117 -2.3687 19 6 7.2376 1.3723 -3.4952 20 6 8.3590 2.1322 -3.3660 21 6 8.7314 2.6606 -2.1314 22 6 7.9820 2.4302 -1.0184 23 6 6.8188 1.6494 -1.1145 24 6 6.0170 1.3873 0.0125 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3575 2.1323 0.0746 29 1 2.6331 1.3958 -0.9248 30 1 1.5548 0.3678 2.3426 31 1 2.9548 1.0258 3.2231 32 1 -0.6053 3.7138 4.7934 33 1 3.5432 -0.6660 0.8759 34 1 4.6167 0.2816 1.9331 35 1 3.6955 -0.4832 -1.5362 36 1 6.9629 0.9710 -4.4596 37 1 8.9702 2.3291 -4.2343 38 1 9.6261 3.2608 -2.0566 39 1 8.2810 2.8447 -0.0670 40 1 6.2786 1.7813 0.9835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292345685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:32 Heat of formation + Delta-G solvation = 83.755733 kcal Electronic energy + Delta-G solvation = -21229.066570 eV Core-core repulsion = 18202.340201 eV Total energy + Delta-G solvation = -3026.726369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83813 -38.11730 -36.66167 -33.75295 -32.81146 -32.23799 -30.80080 -30.10668 -27.84117 -26.37462 -24.56326 -23.76411 -22.12478 -21.93357 -20.85225 -18.97930 -17.98625 -17.24846 -16.76380 -16.29951 -15.23513 -15.09099 -14.68965 -14.49991 -14.12854 -14.07567 -13.89564 -13.73407 -13.18320 -12.93033 -12.56871 -12.37235 -11.84336 -11.77638 -11.70189 -11.35009 -11.26660 -11.08493 -10.84103 -10.62444 -10.50208 -10.27022 -9.92219 -9.44865 -9.32478 -8.89645 -8.63398 -8.57061 -8.23919 -7.43009 -6.05773 -4.02655 0.42483 0.83225 2.03944 2.74981 2.90925 3.26397 3.34483 3.35699 4.11552 4.30461 4.40712 4.59533 4.73698 4.79065 4.89479 5.02605 5.12375 5.12652 5.25071 5.27712 5.39212 5.41232 5.59882 5.72661 5.78485 5.86616 5.99189 6.05608 6.07437 6.16262 6.31552 6.33295 6.47082 6.57795 6.59149 6.77742 6.84296 6.95940 7.06307 7.23028 7.57350 7.83121 7.94401 7.96442 8.63928 9.03845 9.56115 11.07435 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.004086 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.329380 B = 6851.133168 C = 7442.018007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.189 4.189 3 C 0.086 3.914 4 N -0.514 5.514 5 C 0.159 3.841 6 C -0.504 4.504 7 H 0.080 0.920 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.871 3.129 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.086 3.914 15 C -0.118 4.118 16 C 0.144 3.856 17 N -0.480 5.480 18 C 0.120 3.880 19 C -0.094 4.094 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.092 4.092 23 C -0.100 4.100 24 C -0.041 4.041 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.002 0.998 31 H 0.020 0.980 32 H 0.263 0.737 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.155 0.845 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.078 -6.729 -11.526 19.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.209 4.209 3 C -0.042 4.042 4 N -0.236 5.236 5 C 0.033 3.967 6 C -0.542 4.542 7 H 0.098 0.902 8 C -0.132 4.132 9 N -0.540 5.540 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.042 4.042 15 C -0.120 4.120 16 C -0.029 4.029 17 N -0.188 5.188 18 C -0.001 4.001 19 C -0.113 4.113 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.110 4.110 23 C -0.102 4.102 24 C -0.067 4.067 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.020 0.980 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.172 0.828 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.049 -6.469 -12.257 19.735 hybrid contribution -0.475 -1.181 1.653 2.086 sum 13.574 -7.651 -10.604 18.848 Atomic orbital electron populations 1.23805 0.96076 1.01480 0.99904 1.23548 0.96833 0.99647 1.00826 1.21331 0.94738 0.94752 0.93362 1.62335 1.13415 1.44144 1.03660 1.20264 0.92749 0.97752 0.85960 1.20973 1.23809 0.98655 1.10757 0.90236 1.24863 0.95362 0.95537 0.97394 1.69892 1.29004 1.26340 1.28735 0.86931 0.77623 0.84034 0.81615 1.20260 1.21243 1.19159 1.21067 0.93774 0.94424 0.94958 1.20655 0.96353 0.98414 0.96608 1.22925 0.97007 0.95347 0.87601 1.68052 1.04621 1.14018 1.32086 1.18893 0.93081 0.95618 0.92534 1.20768 0.94212 0.98700 0.97583 1.20848 0.96740 0.97393 0.97775 1.20874 1.00183 1.00467 0.92734 1.21028 0.93580 0.97173 0.99250 1.18886 0.96970 1.00020 0.94343 1.21386 0.92914 0.94170 0.98272 0.88044 0.89540 0.88524 0.89138 0.91746 0.98045 0.96161 0.92712 0.94042 0.90095 0.82777 0.85056 0.85637 0.85777 0.85266 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 14.32 29.02 0.42 -2.46 16 2 C -0.19 -3.14 7.31 -36.03 -0.26 -3.40 16 3 C 0.09 1.58 5.32 -4.97 -0.03 1.55 16 4 N -0.51 -10.10 4.65 -238.96 -1.11 -11.21 16 5 C 0.16 3.66 3.67 -4.97 -0.02 3.64 16 6 C -0.50 -13.89 9.10 -34.44 -0.31 -14.20 16 7 H 0.08 2.42 7.86 -52.49 -0.41 2.01 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 10 Si 0.87 21.11 27.55 -169.99 -4.68 16.42 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.23 6.43 56.52 0.36 -5.86 16 14 C 0.09 1.37 4.96 -4.98 -0.02 1.34 16 15 C -0.12 -1.73 4.87 -104.82 -0.51 -2.24 16 16 C 0.14 2.07 9.02 -17.46 -0.16 1.92 16 17 N -0.48 -7.30 10.34 -10.98 -0.11 -7.41 16 18 C 0.12 1.73 6.60 -84.86 -0.56 1.17 16 19 C -0.09 -1.11 9.98 -39.47 -0.39 -1.51 16 20 C -0.11 -1.05 9.94 -39.94 -0.40 -1.44 16 21 C -0.12 -1.20 9.96 -39.92 -0.40 -1.60 16 22 C -0.09 -1.02 9.78 -39.51 -0.39 -1.41 16 23 C -0.10 -1.37 5.74 -106.80 -0.61 -1.98 16 24 C -0.04 -0.57 9.54 -39.22 -0.37 -0.95 16 25 H 0.10 1.77 7.84 -52.48 -0.41 1.36 16 26 H 0.09 1.25 8.06 -52.48 -0.42 0.82 16 27 H 0.10 1.44 6.81 -52.48 -0.36 1.08 16 28 H 0.09 1.89 7.01 -51.93 -0.36 1.53 16 29 H 0.06 1.09 5.82 -51.93 -0.30 0.79 16 30 H 0.00 0.04 5.48 -51.93 -0.28 -0.24 16 31 H 0.02 0.47 7.44 -51.93 -0.39 0.08 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.04 0.61 6.31 -51.93 -0.33 0.29 16 34 H 0.08 1.23 7.80 -51.93 -0.41 0.82 16 35 H 0.16 1.98 7.84 -52.49 -0.41 1.57 16 36 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -31.14 329.58 -9.66 -40.80 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.37 Total: 2.55 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -4.12 Total: -19.69 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.45 Total: -45.06 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.68 Total: 16.42 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.14 -9.66 -40.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292345685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.557 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds