Wall clock time and date at job start Tue Mar 31 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 119.99943 * 2 1 4 4 N 1.46908 * 109.47126 * 124.15877 * 3 2 1 5 5 C 1.46898 * 110.99695 * 300.63049 * 4 3 2 6 6 C 1.50707 * 109.46946 * 288.28049 * 5 4 3 7 7 H 1.07999 * 119.99923 * 356.06695 * 6 5 4 8 8 C 1.37873 * 120.00025 * 176.06572 * 6 5 4 9 9 N 1.31514 * 120.00078 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99963 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47111 * 89.99732 * 10 8 6 12 12 H 1.48499 * 109.47245 * 209.99833 * 10 8 6 13 13 H 1.48505 * 109.47202 * 330.00130 * 10 8 6 14 14 C 1.46901 * 110.99720 * 64.58053 * 4 3 2 15 15 C 1.50693 * 109.47248 * 66.05136 * 14 4 3 16 16 C 1.39332 * 120.03330 * 270.19967 * 15 14 4 17 17 N 1.31086 * 121.75009 * 180.24100 * 16 15 14 18 18 C 1.33676 * 121.32412 * 359.78941 * 17 16 15 19 19 C 1.40598 * 121.08524 * 179.97438 * 18 17 16 20 20 C 1.36072 * 119.75079 * 180.02562 * 19 18 17 21 21 C 1.39360 * 121.07044 * 359.95748 * 20 19 18 22 22 C 1.36142 * 120.86470 * 0.02562 * 21 20 19 23 23 C 1.40427 * 119.61038 * 0.02562 * 22 21 20 24 24 C 1.36580 * 120.03817 * 89.99286 * 15 14 4 25 25 H 1.08006 * 120.00202 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.00062 * 179.97438 * 1 2 3 27 27 H 1.08006 * 120.00202 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47589 * 4.16105 * 3 2 1 29 29 H 1.08997 * 109.47530 * 244.15443 * 3 2 1 30 30 H 1.08995 * 109.47261 * 48.28039 * 5 4 3 31 31 H 1.08998 * 109.46869 * 168.28335 * 5 4 3 32 32 H 0.97004 * 119.99709 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.47256 * 306.04671 * 14 4 3 34 34 H 1.09001 * 109.46880 * 186.04863 * 14 4 3 35 35 H 1.07998 * 119.12502 * 0.02562 * 16 15 14 36 36 H 1.08005 * 120.12017 * 0.03413 * 19 18 17 37 37 H 1.07998 * 119.46506 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.56845 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.19153 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.92341 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9818 1.3403 1.1461 5 6 2.2490 1.2053 2.4121 6 6 1.4811 2.4729 2.6857 7 1 1.5821 3.3192 2.0225 8 6 0.6498 2.5521 3.7828 9 7 -0.0207 3.6580 4.0213 10 14 0.4757 1.0884 4.9303 11 1 1.4946 1.1795 6.0069 12 1 -0.8818 1.0900 5.5322 13 1 0.6761 -0.1679 4.1642 14 6 4.0164 0.3047 1.0236 15 6 4.9021 0.6164 -0.1550 16 6 4.5822 0.1219 -1.4178 17 7 5.3310 0.3683 -2.4651 18 6 6.4378 1.1117 -2.3687 19 6 7.2376 1.3723 -3.4952 20 6 8.3590 2.1322 -3.3660 21 6 8.7314 2.6606 -2.1314 22 6 7.9820 2.4302 -1.0184 23 6 6.8188 1.6494 -1.1145 24 6 6.0170 1.3873 0.0125 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3575 2.1323 0.0746 29 1 2.6331 1.3958 -0.9248 30 1 1.5548 0.3678 2.3426 31 1 2.9548 1.0258 3.2231 32 1 -0.6053 3.7138 4.7934 33 1 3.5432 -0.6660 0.8759 34 1 4.6167 0.2816 1.9331 35 1 3.6955 -0.4832 -1.5362 36 1 6.9629 0.9710 -4.4596 37 1 8.9702 2.3291 -4.2343 38 1 9.6261 3.2608 -2.0566 39 1 8.2810 2.8447 -0.0670 40 1 6.2786 1.7813 0.9835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292345685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:32 Heat of formation + Delta-G solvation = 64.636753 kcal Electronic energy + Delta-G solvation = -21229.895631 eV Core-core repulsion = 18202.340201 eV Total energy + Delta-G solvation = -3027.555430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.82981 -39.41900 -37.74995 -34.91757 -34.71439 -33.60766 -32.04117 -31.03126 -29.59135 -27.66576 -25.87151 -24.96658 -23.34277 -22.95042 -22.40754 -20.39364 -18.96192 -18.81650 -18.19459 -17.36319 -16.76011 -16.49403 -16.04846 -15.64911 -15.37439 -15.36582 -15.15554 -14.71755 -14.55791 -14.29053 -13.95009 -13.80920 -13.29646 -13.01845 -12.78911 -12.65192 -12.47514 -12.34521 -12.29085 -12.19131 -12.12759 -11.79782 -11.49280 -11.31892 -10.74570 -10.46504 -10.24201 -9.63586 -9.17696 -8.94666 -8.24176 -6.26309 -0.51664 -0.13999 1.06681 1.36346 1.37724 1.42103 1.48120 1.98868 2.36966 3.09513 3.10352 3.34675 3.45802 3.67994 3.76960 3.88795 4.01042 4.05307 4.14676 4.23852 4.32124 4.41133 4.47090 4.49969 4.63897 4.72466 4.88749 4.92215 4.97566 5.02991 5.10860 5.14683 5.21113 5.25492 5.47112 5.53999 5.59333 5.63704 5.70163 5.83513 5.96769 6.07009 6.36004 6.66734 6.79800 6.91684 7.36847 8.92828 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.004086 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.329380 B = 6851.133168 C = 7442.018007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.191 4.191 3 C 0.092 3.908 4 N -0.531 5.531 5 C 0.171 3.829 6 C -0.506 4.506 7 H 0.031 0.969 8 C 0.009 3.991 9 N -0.951 5.951 10 Si 0.942 3.058 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.246 1.246 14 C 0.092 3.908 15 C -0.131 4.131 16 C 0.136 3.864 17 N -0.499 5.499 18 C 0.095 3.905 19 C -0.115 4.115 20 C -0.094 4.094 21 C -0.117 4.117 22 C -0.104 4.104 23 C -0.118 4.118 24 C -0.045 4.045 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.005 0.995 31 H 0.028 0.972 32 H 0.265 0.735 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.166 0.834 36 H 0.140 0.860 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.148 0.852 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.287 -8.533 -11.849 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.210 4.210 3 C -0.036 4.036 4 N -0.253 5.253 5 C 0.044 3.956 6 C -0.544 4.544 7 H 0.050 0.950 8 C -0.187 4.187 9 N -0.592 5.592 10 Si 0.765 3.235 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.170 1.170 14 C -0.035 4.035 15 C -0.134 4.134 16 C -0.037 4.037 17 N -0.207 5.207 18 C -0.026 4.026 19 C -0.134 4.134 20 C -0.114 4.114 21 C -0.135 4.135 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.072 4.072 25 H 0.099 0.901 26 H 0.132 0.868 27 H 0.142 0.858 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.022 0.978 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.183 0.817 36 H 0.157 0.843 37 H 0.178 0.822 38 H 0.176 0.824 39 H 0.165 0.835 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 16.282 -8.284 -12.606 22.195 hybrid contribution -1.014 -0.462 1.592 1.943 sum 15.268 -8.746 -11.013 20.758 Atomic orbital electron populations 1.23939 0.96254 1.01870 0.99572 1.23572 0.96873 0.99520 1.01034 1.21156 0.94246 0.94658 0.93498 1.62154 1.13910 1.46694 1.02539 1.19982 0.92629 0.95063 0.87929 1.21198 1.24277 0.99205 1.09734 0.95049 1.25782 0.94956 0.98666 0.99342 1.70062 1.30342 1.29045 1.29795 0.85794 0.77673 0.80625 0.79361 1.19098 1.21222 1.16981 1.21055 0.92742 0.93821 0.95923 1.20531 0.96765 0.99747 0.96313 1.23064 0.97429 0.95711 0.87469 1.68052 1.05350 1.14795 1.32460 1.19332 0.93404 0.96050 0.93788 1.21010 0.95055 0.99970 0.97337 1.21302 0.95752 0.95205 0.99111 1.21335 1.00643 0.99516 0.91996 1.21329 0.92996 0.97003 1.00913 1.19111 0.98045 1.00851 0.93963 1.21606 0.92880 0.93706 0.98978 0.90129 0.86758 0.85805 0.93087 0.90550 0.97768 0.95410 0.92646 0.92462 0.89419 0.81715 0.84261 0.82178 0.82364 0.83465 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.74 14.32 67.79 0.97 -4.77 16 2 C -0.19 -6.12 7.31 25.65 0.19 -5.94 16 3 C 0.09 3.45 5.32 85.55 0.45 3.90 16 4 N -0.53 -20.88 4.65 -909.94 -4.23 -25.11 16 5 C 0.17 7.80 3.67 85.56 0.31 8.12 16 6 C -0.51 -28.79 9.10 25.60 0.23 -28.55 16 7 H 0.03 2.03 7.86 -2.91 -0.02 2.01 16 8 C 0.01 0.54 5.47 84.65 0.46 1.00 16 9 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 10 Si 0.94 43.29 27.55 68.60 1.89 45.18 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.25 -10.43 6.43 99.48 0.64 -9.79 16 14 C 0.09 2.81 4.96 85.55 0.42 3.23 16 15 C -0.13 -3.77 4.87 -19.99 -0.10 -3.87 16 16 C 0.14 3.86 9.02 85.07 0.77 4.62 16 17 N -0.50 -15.05 10.34 -188.64 -1.95 -17.00 16 18 C 0.10 2.68 6.60 40.29 0.27 2.94 16 19 C -0.12 -2.55 9.98 22.34 0.22 -2.33 16 20 C -0.09 -1.53 9.94 22.04 0.22 -1.31 16 21 C -0.12 -1.86 9.96 22.05 0.22 -1.64 16 22 C -0.10 -2.09 9.78 22.32 0.22 -1.88 16 23 C -0.12 -3.12 5.74 -21.28 -0.12 -3.24 16 24 C -0.05 -1.24 9.54 22.50 0.21 -1.03 16 25 H 0.08 2.91 7.84 -2.91 -0.02 2.88 16 26 H 0.11 3.03 8.06 -2.91 -0.02 3.00 16 27 H 0.12 3.33 6.81 -2.91 -0.02 3.31 16 28 H 0.05 2.28 7.01 -2.39 -0.02 2.26 16 29 H 0.08 2.64 5.82 -2.39 -0.01 2.63 16 30 H 0.00 0.21 5.48 -2.39 -0.01 0.20 16 31 H 0.03 1.24 7.44 -2.39 -0.02 1.22 16 32 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.06 1.56 6.31 -2.39 -0.02 1.54 16 34 H 0.09 2.52 7.80 -2.39 -0.02 2.50 16 35 H 0.17 4.09 7.84 -2.91 -0.02 4.07 16 36 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 37 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -70.04 329.58 1.92 -68.12 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.96 Total: 18.65 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 4.95 Total: -30.72 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -5.88 Total: -101.23 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.89 Total: 45.18 kcal Total: -70.04 1.92 -68.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292345685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.761 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds