Wall clock time and date at job start Tue Mar 31 2020 07:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46931 * 2 1 4 4 C 1.52998 * 109.47317 * 239.99717 * 2 1 3 5 5 C 1.53003 * 109.47117 * 119.99665 * 2 1 3 6 6 N 1.46904 * 109.47096 * 35.67075 * 5 2 1 7 7 C 1.46904 * 110.99988 * 288.30462 * 6 5 2 8 8 C 1.50698 * 109.47014 * 314.26400 * 7 6 5 9 9 H 1.07999 * 120.00113 * 4.70708 * 8 7 6 10 10 C 1.37883 * 120.00061 * 184.71276 * 8 7 6 11 11 N 1.31514 * 119.99761 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00220 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47137 * 59.99704 * 12 10 8 14 14 H 1.48502 * 109.47263 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47226 * 300.00073 * 12 10 8 16 16 C 1.46894 * 110.99768 * 52.25783 * 6 5 2 17 17 C 1.53002 * 109.47155 * 60.58107 * 16 6 5 18 18 C 1.50707 * 109.47018 * 179.97438 * 17 16 6 19 19 C 1.33642 * 122.74586 * 124.72912 * 18 17 16 20 20 S 1.76198 * 107.92364 * 179.97438 * 19 18 17 21 21 C 1.70985 * 90.28155 * 0.27950 * 20 19 18 22 22 N 1.29030 * 110.16499 * 359.83849 * 21 20 19 23 23 H 1.08997 * 109.47206 * 298.32050 * 1 2 3 24 24 H 1.08996 * 109.46884 * 58.32504 * 1 2 3 25 25 H 1.09001 * 109.46951 * 178.32740 * 1 2 3 26 26 H 1.09008 * 109.47002 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47309 * 299.99798 * 3 2 1 28 28 H 1.09001 * 109.47569 * 59.99752 * 3 2 1 29 29 H 1.08996 * 109.46956 * 323.27934 * 4 2 1 30 30 H 1.09000 * 109.46753 * 83.28419 * 4 2 1 31 31 H 1.09003 * 109.46791 * 203.28269 * 4 2 1 32 32 H 1.09005 * 109.47157 * 275.67392 * 5 2 1 33 33 H 1.08996 * 109.47131 * 155.67026 * 5 2 1 34 34 H 1.08998 * 109.46891 * 74.26119 * 7 6 5 35 35 H 1.08994 * 109.47131 * 194.26190 * 7 6 5 36 36 H 0.97000 * 120.00048 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.47500 * 300.58038 * 16 6 5 38 38 H 1.09003 * 109.47229 * 180.58119 * 16 6 5 39 39 H 1.08995 * 109.46951 * 60.00236 * 17 16 6 40 40 H 1.08988 * 109.47085 * 299.99667 * 17 16 6 41 41 H 1.08001 * 126.03625 * 0.04493 * 19 18 17 42 42 H 1.08001 * 124.91628 * 179.83945 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.1424 -1.8390 1.5702 7 6 -0.1404 -1.3505 2.0934 8 6 0.1121 -0.2780 3.1215 9 1 1.1190 0.0655 3.3074 10 6 -0.9424 0.2647 3.8248 11 7 -2.1686 -0.1533 3.5981 12 14 -0.6294 1.5936 5.0997 13 1 0.0075 2.7656 4.4469 14 1 -1.9184 2.0075 5.7101 15 1 0.2715 1.0648 6.1551 16 6 0.9389 -2.7032 0.4000 17 6 2.2831 -3.2817 -0.0468 18 6 2.0741 -4.1689 -1.2470 19 6 2.7286 -3.9927 -2.3989 20 16 2.1903 -5.2372 -3.5241 21 6 1.1328 -5.8655 -2.3365 22 7 1.2264 -5.1778 -1.2488 23 1 -0.3633 0.4875 0.9046 24 1 -0.3633 0.5396 -0.8746 25 1 -0.3633 -1.0272 -0.0300 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.3846 -1.5620 -1.4763 30 1 2.0479 -0.0287 -2.0908 31 1 3.0512 -1.0870 -1.0701 32 1 2.0654 -0.0237 2.0866 33 1 3.0439 -1.1031 1.0640 34 1 -0.7328 -0.9385 1.2765 35 1 -0.6825 -2.1758 2.5549 36 1 -2.9104 0.2288 4.0926 37 1 0.5067 -2.1190 -0.4125 38 1 0.2625 -3.5167 0.6623 39 1 2.7152 -3.8659 0.7655 40 1 2.9594 -2.4683 -0.3092 41 1 3.4592 -3.2241 -2.6034 42 1 0.4808 -6.7151 -2.4766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294941675.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:23 Heat of formation + Delta-G solvation = 101.794528 kcal Electronic energy + Delta-G solvation = -21331.805705 eV Core-core repulsion = 18441.305509 eV Total energy + Delta-G solvation = -2890.500197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.21851 -39.11855 -33.77514 -33.17009 -31.72274 -29.16259 -27.75041 -26.80338 -26.05007 -25.35846 -24.55387 -22.27762 -19.99182 -19.55351 -18.30963 -17.86426 -16.54663 -15.82445 -15.31818 -14.89422 -14.61980 -14.25285 -13.90218 -13.52345 -13.36555 -13.17343 -12.90386 -12.60821 -12.28122 -11.90946 -11.84539 -11.37139 -11.09998 -10.97678 -10.84173 -10.75250 -10.67149 -10.59538 -10.32961 -9.96433 -9.89523 -9.64745 -9.52176 -9.47535 -9.40687 -8.88194 -8.70259 -8.38925 -6.74427 -5.98676 -3.97784 0.71473 1.37708 1.70117 2.86042 3.34016 3.39069 3.41381 4.25324 4.45543 4.96761 5.15462 5.24565 5.33671 5.37608 5.39934 5.45118 5.51734 5.75322 5.83025 5.93793 6.05323 6.10683 6.14536 6.17688 6.28764 6.33247 6.37114 6.56034 6.57900 6.65257 6.72790 6.83500 6.90025 7.03357 7.34264 7.53791 7.60674 7.77339 7.83355 8.18236 8.37299 8.69316 9.09272 9.64283 11.12190 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027370 B = 0.004506 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.775665 B = 6211.778408 C = 6771.438800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.093 4.093 3 C -0.134 4.134 4 C -0.154 4.154 5 C 0.062 3.938 6 N -0.532 5.532 7 C 0.146 3.854 8 C -0.507 4.507 9 H 0.064 0.936 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.890 3.110 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.043 3.957 17 C -0.057 4.057 18 C 0.083 3.917 19 C -0.257 4.257 20 S 0.088 5.912 21 C 0.024 3.976 22 N -0.459 5.459 23 H 0.098 0.902 24 H 0.025 0.975 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.175 0.825 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.205 -6.213 -14.567 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.095 4.095 3 C -0.192 4.192 4 C -0.210 4.210 5 C -0.067 4.067 6 N -0.255 5.255 7 C 0.022 3.978 8 C -0.546 4.546 9 H 0.082 0.918 10 C -0.143 4.143 11 N -0.535 5.535 12 Si 0.718 3.282 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.085 4.085 17 C -0.097 4.097 18 C -0.049 4.049 19 C -0.396 4.396 20 S 0.339 5.661 21 C -0.274 4.274 22 N -0.172 5.172 23 H 0.117 0.883 24 H 0.044 0.956 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.192 0.808 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.108 -6.927 -14.689 18.620 hybrid contribution -0.218 1.621 0.754 1.801 sum 8.890 -5.306 -13.936 17.360 Atomic orbital electron populations 1.22957 0.94298 1.02564 1.02230 1.21168 0.96619 0.95399 0.96271 1.21826 0.99747 0.96164 1.01419 1.22591 1.00514 1.00398 0.97530 1.22431 0.94772 0.93316 0.96138 1.62330 1.17112 1.18580 1.27482 1.20827 0.85641 0.95390 0.95921 1.21254 0.93268 1.19548 1.20486 0.91779 1.24944 0.95157 0.97144 0.97068 1.69950 0.98635 1.42907 1.41975 0.86692 0.77313 0.82169 0.82029 1.20359 1.21446 1.20279 1.22438 0.94988 0.97149 0.93902 1.20665 1.00114 0.96540 0.92372 1.20569 0.93248 0.94540 0.96500 1.26832 1.09984 1.06203 0.96556 1.83915 1.37204 1.25018 1.19945 1.28443 1.03205 1.04213 0.91582 1.66162 1.19091 1.06298 1.25675 0.88344 0.95639 0.90701 0.93610 0.93844 0.92171 0.91585 0.94048 0.92890 0.88867 0.93345 0.93975 0.95801 0.92996 0.92933 0.91358 0.89949 0.89155 0.80775 0.78622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 6.18 37.16 0.23 -3.00 16 2 C -0.09 -1.57 0.77 -154.51 -0.12 -1.69 16 3 C -0.13 -2.10 8.23 37.16 0.31 -1.79 16 4 C -0.15 -2.19 7.13 37.16 0.27 -1.93 16 5 C 0.06 1.17 4.54 -3.82 -0.02 1.15 16 6 N -0.53 -11.21 4.90 -236.07 -1.16 -12.37 16 7 C 0.15 3.68 4.23 -4.97 -0.02 3.66 16 8 C -0.51 -13.58 7.35 -34.44 -0.25 -13.84 16 9 H 0.06 1.69 5.53 -52.49 -0.29 1.40 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 12 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.04 0.80 3.91 -3.83 -0.01 0.78 16 17 C -0.06 -0.87 4.59 -27.88 -0.13 -0.99 16 18 C 0.08 1.17 5.69 -84.22 -0.48 0.69 16 19 C -0.26 -2.96 11.07 29.12 0.32 -2.63 16 20 S 0.09 0.84 23.22 -107.50 -2.50 -1.66 16 21 C 0.02 0.27 12.23 51.59 0.63 0.90 16 22 N -0.46 -6.72 10.34 -11.89 -0.12 -6.84 16 23 H 0.10 2.29 5.52 -51.93 -0.29 2.00 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 1.54 3.28 -51.93 -0.17 1.37 16 26 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 28 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 29 H 0.07 0.99 4.41 -51.93 -0.23 0.76 16 30 H 0.04 0.55 7.92 -51.93 -0.41 0.14 16 31 H 0.05 0.68 5.72 -51.93 -0.30 0.38 16 32 H 0.09 1.96 4.97 -51.93 -0.26 1.71 16 33 H 0.05 0.82 6.35 -51.93 -0.33 0.49 16 34 H 0.04 1.08 3.26 -61.03 -0.20 0.88 16 35 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.05 0.97 2.70 -51.93 -0.14 0.83 16 38 H 0.07 1.38 8.07 -51.93 -0.42 0.97 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.09 1.25 3.52 -51.94 -0.18 1.07 16 41 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -29.34 318.47 -8.37 -37.70 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.73 Total: 4.61 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 0.62 Total: -17.18 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.54 Total: -44.55 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.50 Total: -1.66 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.34 -8.37 -37.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294941675.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.496 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds