Wall clock time and date at job start Tue Mar 31 2020 07:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46931 * 2 1 4 4 C 1.52998 * 109.47317 * 239.99717 * 2 1 3 5 5 C 1.53003 * 109.47117 * 119.99665 * 2 1 3 6 6 N 1.46904 * 109.47096 * 35.67075 * 5 2 1 7 7 C 1.46904 * 110.99988 * 288.30462 * 6 5 2 8 8 C 1.50698 * 109.47014 * 314.26400 * 7 6 5 9 9 H 1.07999 * 120.00113 * 4.70708 * 8 7 6 10 10 C 1.37883 * 120.00061 * 184.71276 * 8 7 6 11 11 N 1.31514 * 119.99761 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00220 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47137 * 59.99704 * 12 10 8 14 14 H 1.48502 * 109.47263 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47226 * 300.00073 * 12 10 8 16 16 C 1.46894 * 110.99768 * 52.25783 * 6 5 2 17 17 C 1.53002 * 109.47155 * 60.58107 * 16 6 5 18 18 C 1.50707 * 109.47018 * 179.97438 * 17 16 6 19 19 C 1.33642 * 122.74586 * 124.72912 * 18 17 16 20 20 S 1.76198 * 107.92364 * 179.97438 * 19 18 17 21 21 C 1.70985 * 90.28155 * 0.27950 * 20 19 18 22 22 N 1.29030 * 110.16499 * 359.83849 * 21 20 19 23 23 H 1.08997 * 109.47206 * 298.32050 * 1 2 3 24 24 H 1.08996 * 109.46884 * 58.32504 * 1 2 3 25 25 H 1.09001 * 109.46951 * 178.32740 * 1 2 3 26 26 H 1.09008 * 109.47002 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47309 * 299.99798 * 3 2 1 28 28 H 1.09001 * 109.47569 * 59.99752 * 3 2 1 29 29 H 1.08996 * 109.46956 * 323.27934 * 4 2 1 30 30 H 1.09000 * 109.46753 * 83.28419 * 4 2 1 31 31 H 1.09003 * 109.46791 * 203.28269 * 4 2 1 32 32 H 1.09005 * 109.47157 * 275.67392 * 5 2 1 33 33 H 1.08996 * 109.47131 * 155.67026 * 5 2 1 34 34 H 1.08998 * 109.46891 * 74.26119 * 7 6 5 35 35 H 1.08994 * 109.47131 * 194.26190 * 7 6 5 36 36 H 0.97000 * 120.00048 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.47500 * 300.58038 * 16 6 5 38 38 H 1.09003 * 109.47229 * 180.58119 * 16 6 5 39 39 H 1.08995 * 109.46951 * 60.00236 * 17 16 6 40 40 H 1.08988 * 109.47085 * 299.99667 * 17 16 6 41 41 H 1.08001 * 126.03625 * 0.04493 * 19 18 17 42 42 H 1.08001 * 124.91628 * 179.83945 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.1424 -1.8390 1.5702 7 6 -0.1404 -1.3505 2.0934 8 6 0.1121 -0.2780 3.1215 9 1 1.1190 0.0655 3.3074 10 6 -0.9424 0.2647 3.8248 11 7 -2.1686 -0.1533 3.5981 12 14 -0.6294 1.5936 5.0997 13 1 0.0075 2.7656 4.4469 14 1 -1.9184 2.0075 5.7101 15 1 0.2715 1.0648 6.1551 16 6 0.9389 -2.7032 0.4000 17 6 2.2831 -3.2817 -0.0468 18 6 2.0741 -4.1689 -1.2470 19 6 2.7286 -3.9927 -2.3989 20 16 2.1903 -5.2372 -3.5241 21 6 1.1328 -5.8655 -2.3365 22 7 1.2264 -5.1778 -1.2488 23 1 -0.3633 0.4875 0.9046 24 1 -0.3633 0.5396 -0.8746 25 1 -0.3633 -1.0272 -0.0300 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.3846 -1.5620 -1.4763 30 1 2.0479 -0.0287 -2.0908 31 1 3.0512 -1.0870 -1.0701 32 1 2.0654 -0.0237 2.0866 33 1 3.0439 -1.1031 1.0640 34 1 -0.7328 -0.9385 1.2765 35 1 -0.6825 -2.1758 2.5549 36 1 -2.9104 0.2288 4.0926 37 1 0.5067 -2.1190 -0.4125 38 1 0.2625 -3.5167 0.6623 39 1 2.7152 -3.8659 0.7655 40 1 2.9594 -2.4683 -0.3092 41 1 3.4592 -3.2241 -2.6034 42 1 0.4808 -6.7151 -2.4766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294941675.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:22 Heat of formation + Delta-G solvation = 82.489225 kcal Electronic energy + Delta-G solvation = -21332.642846 eV Core-core repulsion = 18441.305509 eV Total energy + Delta-G solvation = -2891.337337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.48368 -40.34171 -35.40806 -34.79585 -33.27988 -30.44748 -29.35362 -28.01572 -27.79588 -26.70157 -25.67173 -23.96384 -21.66025 -20.51410 -19.71809 -18.81459 -18.49269 -17.01531 -16.77046 -16.57383 -16.04055 -15.61288 -15.35250 -14.99172 -14.69518 -14.23699 -14.05658 -13.98757 -13.81246 -13.46984 -13.20143 -12.86134 -12.73218 -12.48946 -12.32744 -12.31415 -12.22498 -12.04936 -11.78256 -11.70166 -11.50689 -11.22140 -10.99696 -10.73569 -10.50047 -10.49086 -10.33884 -9.64195 -8.46177 -8.12710 -6.18005 -0.13188 0.58177 0.84947 1.41222 1.43616 1.50568 1.90081 2.43658 3.20218 3.37132 3.56141 3.97766 4.07330 4.09240 4.18792 4.28937 4.46427 4.48263 4.64055 4.65897 4.72918 4.77398 4.87106 4.92056 4.97224 5.01831 5.07065 5.17050 5.24419 5.24858 5.31613 5.35121 5.44908 5.54174 5.58734 5.67935 5.74945 5.77379 6.14708 6.52611 6.85000 6.90684 7.00212 7.48577 8.98814 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027370 B = 0.004506 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.775665 B = 6211.778408 C = 6771.438800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.146 4.146 5 C 0.064 3.936 6 N -0.545 5.545 7 C 0.161 3.839 8 C -0.510 4.510 9 H 0.068 0.932 10 C 0.005 3.995 11 N -0.934 5.934 12 Si 0.956 3.044 13 H -0.266 1.266 14 H -0.288 1.288 15 H -0.273 1.273 16 C 0.054 3.946 17 C -0.043 4.043 18 C 0.055 3.945 19 C -0.255 4.255 20 S 0.157 5.843 21 C 0.012 3.988 22 N -0.508 5.508 23 H 0.055 0.945 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.039 0.961 35 H -0.026 1.026 36 H 0.260 0.740 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.198 0.802 42 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.731 -5.659 -16.939 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.091 4.091 3 C -0.187 4.187 4 C -0.202 4.202 5 C -0.064 4.064 6 N -0.267 5.267 7 C 0.035 3.965 8 C -0.549 4.549 9 H 0.086 0.914 10 C -0.193 4.193 11 N -0.575 5.575 12 Si 0.781 3.219 13 H -0.191 1.191 14 H -0.214 1.214 15 H -0.198 1.198 16 C -0.074 4.074 17 C -0.082 4.082 18 C -0.077 4.077 19 C -0.394 4.394 20 S 0.409 5.591 21 C -0.286 4.286 22 N -0.223 5.223 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.056 0.944 35 H -0.008 1.008 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.127 0.873 41 H 0.215 0.785 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 11.660 -6.382 -17.082 21.644 hybrid contribution -1.000 1.355 1.372 2.172 sum 10.659 -5.027 -15.710 19.639 Atomic orbital electron populations 1.22729 0.96718 1.01123 1.00650 1.21105 0.94415 0.96763 0.96837 1.21780 1.01281 0.94690 1.00993 1.22478 1.01253 1.00185 0.96322 1.22437 0.95483 0.92251 0.96268 1.62181 1.15255 1.19788 1.29525 1.20531 0.87354 0.93079 0.95494 1.21563 0.93419 1.19471 1.20407 0.91369 1.25778 0.94879 0.99443 0.99205 1.70098 0.99549 1.44504 1.43337 0.85642 0.77152 0.79662 0.79421 1.19061 1.21383 1.19797 1.22338 0.96793 0.95584 0.92711 1.20446 0.97822 0.97067 0.92915 1.20348 0.95101 0.95324 0.96931 1.27149 1.09258 1.06844 0.96188 1.83686 1.35014 1.22825 1.17528 1.28903 1.03720 1.04468 0.91462 1.66130 1.20639 1.07596 1.27949 0.92606 0.94141 0.92333 0.91108 0.92388 0.94526 0.92430 0.92098 0.90667 0.91421 0.90509 0.94395 1.00778 0.93142 0.92563 0.94595 0.91462 0.87319 0.78479 0.76196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.21 6.18 71.98 0.45 -5.76 16 2 C -0.09 -2.91 0.77 -52.18 -0.04 -2.95 16 3 C -0.13 -3.76 8.23 71.98 0.59 -3.17 16 4 C -0.15 -3.67 7.13 71.98 0.51 -3.15 16 5 C 0.06 2.36 4.54 86.30 0.39 2.75 16 6 N -0.54 -23.75 4.90 -900.78 -4.41 -28.16 16 7 C 0.16 8.59 4.23 85.56 0.36 8.95 16 8 C -0.51 -28.42 7.35 25.60 0.19 -28.23 16 9 H 0.07 3.68 5.53 -2.91 -0.02 3.67 16 10 C 0.00 0.26 5.46 84.66 0.46 0.72 16 11 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 12 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 15 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 16 C 0.05 2.03 3.91 86.30 0.34 2.37 16 17 C -0.04 -1.27 4.59 29.85 0.14 -1.13 16 18 C 0.05 1.46 5.69 41.53 0.24 1.70 16 19 C -0.26 -5.06 11.07 66.78 0.74 -4.33 16 20 S 0.16 2.49 23.22 -56.49 -1.31 1.17 16 21 C 0.01 0.24 12.23 130.65 1.60 1.84 16 22 N -0.51 -14.70 10.34 -191.54 -1.98 -16.68 16 23 H 0.06 2.70 5.52 -2.39 -0.01 2.69 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 2.51 3.28 -2.39 -0.01 2.50 16 26 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 28 H 0.04 1.22 8.12 -2.39 -0.02 1.20 16 29 H 0.06 1.58 4.41 -2.39 -0.01 1.57 16 30 H 0.06 1.33 7.92 -2.39 -0.02 1.31 16 31 H 0.07 1.58 5.72 -2.39 -0.01 1.56 16 32 H 0.07 2.86 4.97 -2.38 -0.01 2.85 16 33 H 0.08 2.41 6.35 -2.39 -0.02 2.39 16 34 H 0.04 2.09 3.26 -10.94 -0.04 2.06 16 35 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 36 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.06 2.11 2.70 -2.39 -0.01 2.11 16 38 H 0.04 1.56 8.07 -2.39 -0.02 1.54 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.11 2.73 3.52 -2.39 -0.01 2.72 16 41 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.22 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -67.68 318.47 1.58 -66.10 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 1.01 Total: 17.84 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 5.96 Total: -30.39 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -6.11 Total: -101.38 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.31 Total: 1.17 kcal Total: -67.68 1.58 -66.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294941675.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.591 kcal (2) G-P(sol) polarization free energy of solvation -67.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds