Wall clock time and date at job start Tue Mar 31 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31782 * 122.74971 * 2 1 4 4 C 1.29022 * 117.12515 * 179.97438 * 3 2 1 5 5 S 1.70975 * 110.16832 * 359.72780 * 4 3 2 6 6 C 1.33636 * 122.74788 * 180.02562 * 2 1 3 7 7 C 1.50698 * 126.04228 * 359.97438 * 6 2 1 8 8 C 1.53008 * 109.46668 * 90.00240 * 7 6 2 9 9 N 1.46902 * 109.46622 * 180.02562 * 8 7 6 10 10 C 1.46906 * 110.99573 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47020 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47381 * 300.00339 * 11 10 9 13 13 C 1.53010 * 109.47013 * 60.00056 * 11 10 9 14 14 C 1.52996 * 109.47077 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47047 * 180.02562 * 14 11 10 16 16 H 1.07999 * 120.00136 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00112 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47104 * 60.00043 * 19 17 15 21 21 H 1.48496 * 109.47638 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47155 * 300.00196 * 19 17 15 23 23 H 1.08999 * 109.47303 * 269.99954 * 1 2 3 24 24 H 1.09007 * 109.47309 * 30.00240 * 1 2 3 25 25 H 1.09004 * 109.47154 * 149.99630 * 1 2 3 26 26 H 1.08004 * 124.91407 * 180.02562 * 4 3 2 27 27 H 1.09006 * 109.46796 * 330.00619 * 7 6 2 28 28 H 1.08995 * 109.47490 * 210.00223 * 7 6 2 29 29 H 1.08990 * 109.46924 * 60.00357 * 8 7 6 30 30 H 1.09004 * 109.46978 * 300.00234 * 8 7 6 31 31 H 1.00896 * 111.00219 * 303.95583 * 9 8 7 32 32 H 1.09002 * 109.46991 * 299.99841 * 10 9 8 33 33 H 1.09000 * 109.47202 * 60.00133 * 10 9 8 34 34 H 1.09002 * 109.47185 * 59.99218 * 12 11 10 35 35 H 1.08994 * 109.47063 * 180.02562 * 12 11 10 36 36 H 1.09008 * 109.46699 * 300.00074 * 12 11 10 37 37 H 1.08992 * 109.46866 * 59.99807 * 13 11 10 38 38 H 1.09000 * 109.46687 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47213 * 300.00043 * 13 11 10 40 40 H 1.08993 * 109.47277 * 299.99937 * 14 11 10 41 41 H 1.09000 * 109.47041 * 60.00238 * 14 11 10 42 42 H 0.96998 * 120.00461 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 0.0005 5 16 3.9332 -0.6731 0.0087 6 6 2.2299 -1.1240 -0.0005 7 6 1.6847 -2.5289 -0.0006 8 6 1.4997 -3.0040 -1.4432 9 7 0.9676 -4.3732 -1.4433 10 6 0.7762 -4.8635 -2.8148 11 6 0.2229 -6.2893 -2.7742 12 6 1.2105 -7.1990 -2.0406 13 6 -1.1188 -6.2950 -2.0385 14 6 0.0228 -6.7996 -4.2026 15 6 -0.5228 -8.2038 -4.1625 16 1 -0.7087 -8.6841 -3.2132 17 6 -0.7846 -8.8755 -5.3378 18 7 -0.5578 -8.2910 -6.4938 19 14 -1.4602 -10.6163 -5.2882 20 1 -2.7623 -10.6218 -4.5742 21 1 -1.6533 -11.1122 -6.6746 22 1 -0.5016 -11.4992 -4.5764 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5139 26 1 4.2059 1.8027 0.0010 27 1 0.7236 -2.5456 0.5135 28 1 2.3830 -3.1897 0.5128 29 1 2.4606 -2.9871 -1.9573 30 1 0.8013 -2.3431 -1.9567 31 1 1.5650 -4.9933 -0.9174 32 1 0.0728 -4.2152 -3.3375 33 1 1.7320 -4.8599 -3.3388 34 1 1.3526 -6.8351 -1.0230 35 1 0.8165 -8.2148 -2.0121 36 1 2.1663 -7.1949 -2.5647 37 1 -1.8223 -5.6470 -2.5611 38 1 -1.5131 -7.3107 -2.0100 39 1 -0.9767 -5.9312 -1.0209 40 1 -0.6810 -6.1516 -4.7247 41 1 0.9784 -6.7956 -4.7270 42 1 -0.7423 -8.7633 -7.3207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294968924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:55 Heat of formation + Delta-G solvation = 16.711487 kcal Electronic energy + Delta-G solvation = -19629.027676 eV Core-core repulsion = 16734.838001 eV Total energy + Delta-G solvation = -2894.189674 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.13241 -37.79836 -35.40039 -33.02044 -32.01415 -30.12521 -27.24220 -26.63971 -26.32978 -25.20110 -24.39699 -22.61044 -21.82980 -19.06014 -18.37671 -17.80835 -16.24817 -16.11063 -15.44160 -15.24374 -14.76597 -14.28156 -13.94999 -13.82051 -13.60105 -13.09142 -12.80166 -12.76931 -12.60351 -12.31357 -12.14628 -11.97989 -11.70886 -11.60340 -11.11355 -10.93569 -10.82858 -10.77494 -10.48804 -10.26716 -10.14905 -9.88271 -9.68585 -9.48299 -9.04275 -8.92436 -8.80799 -8.31315 -8.15355 -5.95896 -3.96205 0.47326 1.13162 1.51603 2.55593 3.34754 3.39525 3.41568 3.99146 4.27401 4.49621 4.77200 4.85929 4.97426 5.06757 5.20370 5.39765 5.40814 5.44401 5.62244 5.65068 5.69353 5.74166 5.88107 5.92120 5.97993 6.11723 6.24341 6.32412 6.49806 6.65420 6.77887 6.82581 7.18880 7.20511 7.25899 7.36528 7.48645 7.62607 7.70616 7.85558 8.04236 8.48442 9.09017 9.66569 11.15777 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038942 B = 0.002750 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.837622 B =10180.140715 C =10303.236399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.058 3.942 3 N -0.467 5.467 4 C 0.013 3.987 5 S 0.112 5.888 6 C -0.207 4.207 7 C -0.041 4.041 8 C 0.064 3.936 9 N -0.686 5.686 10 C 0.071 3.929 11 C -0.059 4.059 12 C -0.129 4.129 13 C -0.116 4.116 14 C 0.034 3.966 15 C -0.508 4.508 16 H 0.059 0.941 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.197 0.803 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.338 0.662 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.033 0.967 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.015 0.985 41 H 0.012 0.988 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 15.752 14.493 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 N -0.181 5.181 4 C -0.285 4.285 5 S 0.366 5.634 6 C -0.329 4.329 7 C -0.081 4.081 8 C -0.066 4.066 9 N -0.318 5.318 10 C -0.058 4.058 11 C -0.059 4.059 12 C -0.186 4.186 13 C -0.173 4.173 14 C -0.004 4.004 15 C -0.546 4.546 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.214 0.786 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.157 0.843 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.793 15.974 14.375 22.859 hybrid contribution -0.085 -0.931 -0.502 1.061 sum 7.708 15.043 13.872 21.867 Atomic orbital electron populations 1.20403 0.86862 1.03746 1.02978 1.20281 0.98393 0.86083 1.02608 1.66178 1.05043 1.31733 1.15118 1.28239 0.95255 0.99953 1.05012 1.84079 1.07562 1.03768 1.68037 1.25735 0.94668 1.00865 1.11611 1.20055 1.01727 0.88016 0.98285 1.21915 0.98263 0.91833 0.94635 1.60558 1.53141 1.02049 1.16044 1.22113 0.98910 0.97438 0.87339 1.20635 0.94864 0.91148 0.99253 1.21772 0.98586 1.00940 0.97337 1.21599 0.96214 1.01180 0.98318 1.19116 0.96693 0.95810 0.88738 1.21199 1.42133 0.99175 0.92091 0.92335 1.25015 0.96008 0.97854 0.95702 1.69952 1.49167 1.37456 0.97206 0.86725 0.79576 0.85209 0.76885 1.20292 1.21446 1.20365 0.90691 0.90696 0.90053 0.78587 0.88595 0.90697 0.95538 0.90865 0.84293 0.91518 0.95839 0.94801 0.91684 0.94134 0.94179 0.92691 0.93875 0.96689 0.96953 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.82 36.00 0.35 -0.39 16 2 C 0.06 0.64 6.74 -84.23 -0.57 0.07 16 3 N -0.47 -5.37 10.53 -11.90 -0.13 -5.50 16 4 C 0.01 0.12 12.23 51.58 0.63 0.75 16 5 S 0.11 0.98 23.22 -107.50 -2.50 -1.51 16 6 C -0.21 -2.13 5.84 -35.92 -0.21 -2.34 16 7 C -0.04 -0.40 5.41 -27.88 -0.15 -0.55 16 8 C 0.06 0.75 5.67 -3.82 -0.02 0.73 16 9 N -0.69 -9.40 5.71 -113.77 -0.65 -10.05 16 10 C 0.07 1.19 4.65 -3.82 -0.02 1.18 16 11 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 12 C -0.13 -2.34 7.89 37.16 0.29 -2.05 16 13 C -0.12 -2.20 8.06 37.16 0.30 -1.90 16 14 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 15 C -0.51 -13.82 7.65 -34.44 -0.26 -14.08 16 16 H 0.06 1.54 5.68 -52.49 -0.30 1.25 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.72 7.18 -51.93 -0.37 0.35 16 26 H 0.20 1.09 8.06 -52.48 -0.42 0.66 16 27 H 0.10 0.91 7.43 -51.93 -0.39 0.53 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.90 7.98 -51.93 -0.41 0.49 16 31 H 0.34 4.39 6.77 -39.29 -0.27 4.12 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 35 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 36 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.12 6.61 -51.93 -0.34 0.78 16 39 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -30.33 347.90 -9.22 -39.55 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.95 Total: -0.49 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 0.04 Total: -17.64 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.04 Total: -41.67 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.50 Total: -1.51 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.33 -9.22 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294968924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.259 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds