Wall clock time and date at job start Tue Mar 31 2020 06:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31782 * 122.74971 * 2 1 4 4 C 1.29022 * 117.12515 * 179.97438 * 3 2 1 5 5 S 1.70975 * 110.16832 * 359.72780 * 4 3 2 6 6 C 1.33636 * 122.74788 * 180.02562 * 2 1 3 7 7 C 1.50698 * 126.04228 * 359.97438 * 6 2 1 8 8 C 1.53008 * 109.46668 * 90.00240 * 7 6 2 9 9 N 1.46902 * 109.46622 * 180.02562 * 8 7 6 10 10 C 1.46906 * 110.99573 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47020 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47381 * 300.00339 * 11 10 9 13 13 C 1.53010 * 109.47013 * 60.00056 * 11 10 9 14 14 C 1.52996 * 109.47077 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47047 * 180.02562 * 14 11 10 16 16 H 1.07999 * 120.00136 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00112 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47104 * 60.00043 * 19 17 15 21 21 H 1.48496 * 109.47638 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47155 * 300.00196 * 19 17 15 23 23 H 1.08999 * 109.47303 * 269.99954 * 1 2 3 24 24 H 1.09007 * 109.47309 * 30.00240 * 1 2 3 25 25 H 1.09004 * 109.47154 * 149.99630 * 1 2 3 26 26 H 1.08004 * 124.91407 * 180.02562 * 4 3 2 27 27 H 1.09006 * 109.46796 * 330.00619 * 7 6 2 28 28 H 1.08995 * 109.47490 * 210.00223 * 7 6 2 29 29 H 1.08990 * 109.46924 * 60.00357 * 8 7 6 30 30 H 1.09004 * 109.46978 * 300.00234 * 8 7 6 31 31 H 1.00896 * 111.00219 * 303.95583 * 9 8 7 32 32 H 1.09002 * 109.46991 * 299.99841 * 10 9 8 33 33 H 1.09000 * 109.47202 * 60.00133 * 10 9 8 34 34 H 1.09002 * 109.47185 * 59.99218 * 12 11 10 35 35 H 1.08994 * 109.47063 * 180.02562 * 12 11 10 36 36 H 1.09008 * 109.46699 * 300.00074 * 12 11 10 37 37 H 1.08992 * 109.46866 * 59.99807 * 13 11 10 38 38 H 1.09000 * 109.46687 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47213 * 300.00043 * 13 11 10 40 40 H 1.08993 * 109.47277 * 299.99937 * 14 11 10 41 41 H 1.09000 * 109.47041 * 60.00238 * 14 11 10 42 42 H 0.96998 * 120.00461 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9819 0.0005 5 16 3.9332 -0.6731 0.0087 6 6 2.2299 -1.1240 -0.0005 7 6 1.6847 -2.5289 -0.0006 8 6 1.4997 -3.0040 -1.4432 9 7 0.9676 -4.3732 -1.4433 10 6 0.7762 -4.8635 -2.8148 11 6 0.2229 -6.2893 -2.7742 12 6 1.2105 -7.1990 -2.0406 13 6 -1.1188 -6.2950 -2.0385 14 6 0.0228 -6.7996 -4.2026 15 6 -0.5228 -8.2038 -4.1625 16 1 -0.7087 -8.6841 -3.2132 17 6 -0.7846 -8.8755 -5.3378 18 7 -0.5578 -8.2910 -6.4938 19 14 -1.4602 -10.6163 -5.2882 20 1 -2.7623 -10.6218 -4.5742 21 1 -1.6533 -11.1122 -6.6746 22 1 -0.5016 -11.4992 -4.5764 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5139 26 1 4.2059 1.8027 0.0010 27 1 0.7236 -2.5456 0.5135 28 1 2.3830 -3.1897 0.5128 29 1 2.4606 -2.9871 -1.9573 30 1 0.8013 -2.3431 -1.9567 31 1 1.5650 -4.9933 -0.9174 32 1 0.0728 -4.2152 -3.3375 33 1 1.7320 -4.8599 -3.3388 34 1 1.3526 -6.8351 -1.0230 35 1 0.8165 -8.2148 -2.0121 36 1 2.1663 -7.1949 -2.5647 37 1 -1.8223 -5.6470 -2.5611 38 1 -1.5131 -7.3107 -2.0100 39 1 -0.9767 -5.9312 -1.0209 40 1 -0.6810 -6.1516 -4.7247 41 1 0.9784 -6.7956 -4.7270 42 1 -0.7423 -8.7633 -7.3207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294968924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:54 Heat of formation + Delta-G solvation = -1.503853 kcal Electronic energy + Delta-G solvation = -19629.817552 eV Core-core repulsion = 16734.838001 eV Total energy + Delta-G solvation = -2894.979551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.87625 -39.24226 -36.61253 -34.62114 -33.43079 -31.03332 -29.00767 -27.87337 -27.78089 -26.35519 -25.48175 -24.16170 -22.96699 -19.87381 -19.45674 -19.00556 -18.31732 -17.03955 -16.61422 -16.46277 -16.05657 -15.56133 -15.32628 -14.93906 -14.55349 -14.37852 -14.24142 -13.89148 -13.71793 -13.44273 -13.39364 -13.21224 -12.90672 -12.69591 -12.68305 -12.62658 -12.35878 -12.21618 -12.11877 -11.90953 -11.77004 -11.35121 -10.85378 -10.76993 -10.60850 -10.49249 -10.18832 -9.63737 -9.32578 -8.13174 -6.20332 -0.24363 0.44469 0.80523 1.41684 1.43883 1.51139 1.80306 2.44502 3.18447 3.20750 3.38968 3.98313 4.06818 4.09325 4.22700 4.24918 4.33304 4.40594 4.41753 4.59391 4.76173 4.77005 4.82281 4.88809 4.94584 4.97005 5.05065 5.09806 5.10956 5.23925 5.24688 5.39155 5.53534 5.55940 5.61037 5.67183 5.89080 5.93951 6.04465 6.37460 6.53568 6.76749 6.95020 7.47109 8.99091 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038942 B = 0.002750 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.837622 B =10180.140715 C =10303.236399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.043 3.957 3 N -0.500 5.500 4 C 0.016 3.984 5 S 0.136 5.864 6 C -0.224 4.224 7 C -0.030 4.030 8 C 0.068 3.932 9 N -0.678 5.678 10 C 0.083 3.917 11 C -0.055 4.055 12 C -0.123 4.123 13 C -0.107 4.107 14 C 0.039 3.961 15 C -0.514 4.514 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.956 3.044 20 H -0.268 1.268 21 H -0.289 1.289 22 H -0.267 1.267 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.227 0.773 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.347 0.653 32 H 0.055 0.945 33 H 0.016 0.984 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.035 0.965 37 H 0.029 0.971 38 H 0.038 0.962 39 H 0.071 0.929 40 H -0.017 1.017 41 H -0.018 1.018 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.270 15.629 16.627 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 N -0.215 5.215 4 C -0.281 4.281 5 S 0.390 5.610 6 C -0.346 4.346 7 C -0.070 4.070 8 C -0.062 4.062 9 N -0.311 5.311 10 C -0.047 4.047 11 C -0.056 4.056 12 C -0.180 4.180 13 C -0.164 4.164 14 C 0.002 3.998 15 C -0.552 4.552 16 H 0.085 0.915 17 C -0.202 4.202 18 N -0.581 5.581 19 Si 0.781 3.219 20 H -0.193 1.193 21 H -0.215 1.215 22 H -0.192 1.192 23 H 0.103 0.897 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.243 0.757 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.166 0.834 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.001 0.999 41 H 0.001 0.999 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.375 15.850 16.537 24.389 hybrid contribution -0.199 -0.803 -1.169 1.433 sum 8.176 15.046 15.367 23.009 Atomic orbital electron populations 1.20423 0.86257 1.03617 1.03576 1.20563 0.99168 0.86368 1.02684 1.66224 1.06165 1.32314 1.16781 1.28815 0.95092 1.01100 1.03130 1.83975 1.06322 1.03367 1.67362 1.25805 0.95642 1.00800 1.12349 1.19933 1.02384 0.88005 0.96691 1.21889 0.97702 0.90384 0.96195 1.60466 1.53824 1.03081 1.13709 1.21803 0.98044 0.95583 0.89229 1.20499 0.96206 0.93005 0.95878 1.21692 0.97545 0.99587 0.99161 1.21507 0.95258 1.00040 0.99601 1.19008 0.94016 0.94909 0.91885 1.21604 1.41235 1.00031 0.92372 0.91474 1.25930 0.96543 1.02289 0.95404 1.70103 1.50727 1.39324 0.97907 0.85633 0.79272 0.80049 0.76914 1.19284 1.21455 1.19209 0.89701 0.91033 0.89928 0.75666 0.88107 0.89535 0.95827 0.91614 0.83358 0.92641 0.96597 0.91051 0.93443 0.94584 0.95213 0.94310 0.91020 0.99896 0.99917 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.82 71.23 0.70 -0.69 16 2 C 0.04 0.91 6.74 41.52 0.28 1.19 16 3 N -0.50 -10.90 10.53 -191.56 -2.02 -12.92 16 4 C 0.02 0.26 12.23 130.66 1.60 1.85 16 5 S 0.14 2.11 23.22 -56.49 -1.31 0.80 16 6 C -0.22 -4.23 5.84 24.64 0.14 -4.09 16 7 C -0.03 -0.52 5.41 29.85 0.16 -0.36 16 8 C 0.07 1.49 5.67 86.31 0.49 1.98 16 9 N -0.68 -17.17 5.71 -513.86 -2.94 -20.10 16 10 C 0.08 2.76 4.65 86.30 0.40 3.16 16 11 C -0.06 -2.15 0.60 -52.18 -0.03 -2.19 16 12 C -0.12 -4.26 7.89 71.98 0.57 -3.70 16 13 C -0.11 -3.94 8.06 71.99 0.58 -3.36 16 14 C 0.04 2.04 4.04 29.85 0.12 2.16 16 15 C -0.51 -28.36 7.65 25.60 0.20 -28.16 16 16 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 17 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 18 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 19 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.08 1.38 7.18 -2.39 -0.02 1.37 16 26 H 0.23 1.92 8.06 -2.91 -0.02 1.90 16 27 H 0.10 1.67 7.43 -2.38 -0.02 1.65 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 1.55 7.98 -2.38 -0.02 1.54 16 31 H 0.35 7.89 6.77 -89.70 -0.61 7.28 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 1.94 6.57 -2.39 -0.02 1.92 16 35 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 36 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.04 1.53 6.61 -2.39 -0.02 1.52 16 39 H 0.07 2.23 7.60 -2.39 -0.02 2.21 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -66.18 347.90 2.10 -64.08 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.39 Total: 11.18 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 5.67 Total: -32.03 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -4.67 Total: -90.38 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.31 Total: 0.80 kcal Total: -66.18 2.10 -64.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294968924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.577 kcal (2) G-P(sol) polarization free energy of solvation -66.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds