Wall clock time and date at job start Tue Mar 31 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.15292 * 2 1 4 4 C 1.50962 * 109.15877 * 119.23949 * 2 1 3 5 5 C 1.53891 * 109.17115 * 215.10428 * 4 2 1 6 6 N 1.38906 * 112.97341 * 275.98551 * 5 4 2 7 7 C 1.46895 * 111.00469 * 193.46556 * 6 5 4 8 8 C 1.53000 * 109.47323 * 76.38762 * 7 6 5 9 9 H 1.09003 * 109.47111 * 303.30132 * 8 7 6 10 10 C 1.47199 * 109.46888 * 63.30014 * 8 7 6 11 11 N 6.25645 * 138.98126 * 145.35834 * 2 1 3 12 12 C 1.53001 * 109.47354 * 183.30295 * 8 7 6 13 13 C 1.50695 * 109.47454 * 175.00249 * 12 8 7 14 14 H 1.08010 * 119.99883 * 359.97438 * 13 12 8 15 15 C 1.37879 * 120.00434 * 179.97438 * 13 12 8 16 16 N 1.31516 * 119.99659 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00110 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46891 * 60.00373 * 17 15 13 19 19 H 1.48498 * 109.46664 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47631 * 300.00234 * 17 15 13 21 21 C 1.47397 * 115.32015 * 66.13858 * 6 5 4 22 22 C 1.51083 * 107.93208 * 271.08502 * 21 6 5 23 23 S 1.82264 * 110.47479 * 96.74224 * 22 21 6 24 24 H 1.08998 * 109.47857 * 300.75843 * 1 2 3 25 25 H 1.09005 * 109.47148 * 60.76465 * 1 2 3 26 26 H 1.09004 * 109.47140 * 180.75733 * 1 2 3 27 27 H 1.09002 * 109.47574 * 168.88338 * 3 2 1 28 28 H 1.08999 * 109.47245 * 288.88655 * 3 2 1 29 29 H 1.09007 * 109.47193 * 48.88940 * 3 2 1 30 30 H 1.08996 * 109.52343 * 95.19167 * 4 2 1 31 31 H 1.09008 * 109.56939 * 335.03805 * 4 2 1 32 32 H 1.08995 * 108.78769 * 155.08194 * 5 4 2 33 33 H 1.09008 * 108.78178 * 36.88163 * 5 4 2 34 34 H 1.09004 * 109.46935 * 316.39363 * 7 6 5 35 35 H 1.09000 * 109.47377 * 196.39047 * 7 6 5 36 36 H 1.09001 * 109.46866 * 295.00163 * 12 8 7 37 37 H 1.09000 * 109.47456 * 54.99750 * 12 8 7 38 38 H 0.96999 * 119.99949 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.76689 * 30.69988 * 21 6 5 40 40 H 1.09006 * 109.76687 * 151.48173 * 21 6 5 41 41 H 1.08994 * 109.30459 * 336.43303 * 22 21 6 42 42 H 1.09002 * 109.13836 * 216.93977 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0319 1.4453 0.0000 4 6 2.0254 -0.6965 1.2443 5 6 3.3146 -0.0097 1.7286 6 7 4.4522 -0.4726 1.0797 7 6 5.6697 -0.0383 1.7773 8 6 5.8725 -0.8933 3.0298 9 1 4.9887 -0.8240 3.6641 10 6 6.0858 -2.2959 2.6371 11 7 6.2504 -3.3782 2.3341 12 6 7.0940 -0.3879 3.8002 13 6 7.2220 -1.1492 5.0944 14 1 6.5037 -1.9166 5.3429 15 6 8.2561 -0.8662 5.9614 16 7 9.1305 0.0685 5.6590 17 14 8.4143 -1.8094 7.5659 18 1 8.5757 -3.2569 7.2754 19 1 9.6006 -1.3198 8.3129 20 1 7.1929 -1.6021 8.3846 21 6 4.5280 -0.1611 -0.3590 22 6 3.8538 -1.2827 -1.1140 23 16 2.1294 -0.8412 -1.5058 24 1 -0.3635 0.5255 0.8830 25 1 -0.3634 0.5019 -0.8968 26 1 -0.3633 -1.0276 0.0136 27 1 3.1037 1.4578 0.1981 28 1 1.8369 1.8977 -0.9723 29 1 1.5128 2.0103 0.7743 30 1 2.2328 -1.7424 1.0182 31 1 1.2656 -0.6361 2.0237 32 1 3.4251 -0.1851 2.7987 33 1 3.2257 1.0634 1.5585 34 1 5.5702 1.0086 2.0644 35 1 6.5283 -0.1536 1.1158 36 1 7.9907 -0.5394 3.1993 37 1 6.9749 0.6743 4.0137 38 1 9.8577 0.2679 6.2691 39 1 4.0150 0.7793 -0.5600 40 1 5.5714 -0.0855 -0.6653 41 1 3.8648 -2.1856 -0.5035 42 1 4.3977 -1.4675 -2.0403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331994448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:09 Heat of formation + Delta-G solvation = 44.116601 kcal Electronic energy + Delta-G solvation = -20668.937067 eV Core-core repulsion = 17775.935768 eV Total energy + Delta-G solvation = -2893.001299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99514 -36.77993 -35.34815 -33.69958 -32.25701 -30.98612 -29.11229 -27.89423 -26.41987 -23.96952 -23.14434 -21.72476 -21.62093 -19.69516 -16.96800 -16.71185 -16.50982 -16.19384 -15.59694 -14.97620 -14.58848 -14.53751 -13.98532 -13.72191 -13.47436 -13.16058 -12.78938 -12.73436 -12.51348 -12.40516 -12.03255 -11.92892 -11.69519 -11.66756 -11.32810 -11.26629 -11.10546 -10.93743 -10.79588 -10.68432 -10.55231 -10.51371 -10.18040 -9.70901 -9.51920 -9.26706 -8.47738 -8.03954 -7.74019 -6.12119 -4.15388 1.62865 2.46020 3.29336 3.33809 3.37504 3.69763 3.81315 3.88758 4.39093 4.44810 4.50948 4.81107 4.86132 4.94387 4.98911 5.07984 5.21185 5.26128 5.28898 5.37271 5.42429 5.50260 5.53389 5.62636 5.65662 5.66728 5.73986 5.80724 5.90344 5.94972 5.99923 6.05339 6.19359 6.30801 6.48465 7.09428 7.38380 7.44554 7.50407 7.82846 8.20458 8.57596 8.89080 9.50283 10.98724 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.030111 B = 0.003841 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.681714 B = 7288.240526 C = 7448.963859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.014 4.014 3 C -0.165 4.165 4 C -0.117 4.117 5 C 0.050 3.950 6 N -0.562 5.562 7 C 0.070 3.930 8 C 0.011 3.989 9 H 0.099 0.901 10 C 0.257 3.743 11 N -0.481 5.481 12 C 0.032 3.968 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.043 3.957 22 C -0.070 4.070 23 S -0.287 6.287 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.263 0.737 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.738 5.403 -11.805 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.124 4.124 3 C -0.223 4.223 4 C -0.156 4.156 5 C -0.079 4.079 6 N -0.286 5.286 7 C -0.058 4.058 8 C -0.011 4.011 9 H 0.116 0.884 10 C -0.060 4.060 11 N -0.158 5.158 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.085 4.085 22 C -0.219 4.219 23 S -0.059 6.059 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.923 3.187 -13.125 20.128 hybrid contribution 0.811 0.810 2.100 2.392 sum -14.113 3.998 -11.026 18.350 Atomic orbital electron populations 1.21778 0.91750 1.02829 1.02303 1.22404 0.98580 0.97187 0.94229 1.22861 1.02864 0.94074 1.02486 1.21864 0.97171 1.00789 0.95800 1.21062 0.89395 0.97887 0.99600 1.58141 1.03110 1.65350 1.01989 1.22274 0.90933 0.97371 0.95204 1.19259 1.03513 0.82746 0.95597 0.88356 1.28834 0.91291 0.94580 0.91253 1.80985 1.10832 1.12911 1.11033 1.19163 0.90035 0.97199 0.94303 1.21093 1.11815 1.20148 1.03439 0.92594 1.24942 0.95534 0.95063 0.98330 1.69924 1.14923 1.31105 1.37097 0.86660 0.77617 0.80410 0.83441 1.20207 1.21173 1.20052 1.22464 1.01709 0.96981 0.87307 1.23332 0.92434 1.02458 1.03645 1.86842 1.16238 1.76725 1.26134 0.91252 0.92142 0.91686 0.89583 0.91845 0.91727 0.90055 0.90099 0.89985 0.93760 0.92442 0.90218 0.95612 0.94507 0.92727 0.90952 0.89670 0.88406 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 8.17 37.16 0.30 -0.77 16 2 C -0.01 -0.14 0.83 -91.65 -0.08 -0.21 16 3 C -0.16 -1.44 6.58 37.16 0.24 -1.20 16 4 C -0.12 -1.22 5.02 -27.29 -0.14 -1.35 16 5 C 0.05 0.55 4.57 -7.45 -0.03 0.51 16 6 N -0.56 -6.89 3.40 -241.04 -0.82 -7.71 16 7 C 0.07 0.96 4.40 -3.83 -0.02 0.94 16 8 C 0.01 0.19 2.24 -93.41 -0.21 -0.01 16 9 H 0.10 1.65 6.63 -51.93 -0.34 1.31 16 10 C 0.26 5.25 13.63 -20.76 -0.28 4.97 16 11 N -0.48 -10.74 18.54 42.15 0.78 -9.96 16 12 C 0.03 0.71 4.42 -27.89 -0.12 0.59 16 13 C -0.53 -13.82 8.60 -34.44 -0.30 -14.11 16 14 H 0.06 1.47 7.59 -52.48 -0.40 1.07 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 17 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.04 0.46 5.36 -4.52 -0.02 0.44 16 22 C -0.07 -0.79 5.85 36.19 0.21 -0.58 16 23 S -0.29 -3.25 20.87 -107.50 -2.24 -5.49 16 24 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.09 0.80 2.77 -51.93 -0.14 0.65 16 28 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.08 1.01 7.18 -51.93 -0.37 0.64 16 31 H 0.08 0.74 7.69 -51.92 -0.40 0.34 16 32 H 0.08 0.96 6.30 -51.93 -0.33 0.64 16 33 H 0.04 0.45 4.71 -51.92 -0.24 0.20 16 34 H 0.06 0.72 7.97 -51.93 -0.41 0.31 16 35 H 0.08 1.10 7.35 -51.93 -0.38 0.71 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.07 0.73 4.05 -51.93 -0.21 0.52 16 40 H 0.08 0.88 7.27 -51.93 -0.38 0.50 16 41 H 0.10 1.30 7.56 -51.93 -0.39 0.91 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -29.30 332.43 -8.61 -37.91 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.51 Total: -2.21 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.54 Total: -9.16 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.70 Total: -42.14 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -2.24 Total: -5.49 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.30 -8.61 -37.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331994448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.022 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds