Wall clock time and date at job start Tue Mar 31 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.15292 * 2 1 4 4 C 1.50962 * 109.15877 * 119.23949 * 2 1 3 5 5 C 1.53891 * 109.17115 * 215.10428 * 4 2 1 6 6 N 1.38906 * 112.97341 * 275.98551 * 5 4 2 7 7 C 1.46895 * 111.00469 * 193.46556 * 6 5 4 8 8 C 1.53000 * 109.47323 * 76.38762 * 7 6 5 9 9 H 1.09003 * 109.47111 * 303.30132 * 8 7 6 10 10 C 1.47199 * 109.46888 * 63.30014 * 8 7 6 11 11 N 6.25645 * 138.98126 * 145.35834 * 2 1 3 12 12 C 1.53001 * 109.47354 * 183.30295 * 8 7 6 13 13 C 1.50695 * 109.47454 * 175.00249 * 12 8 7 14 14 H 1.08010 * 119.99883 * 359.97438 * 13 12 8 15 15 C 1.37879 * 120.00434 * 179.97438 * 13 12 8 16 16 N 1.31516 * 119.99659 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00110 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46891 * 60.00373 * 17 15 13 19 19 H 1.48498 * 109.46664 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47631 * 300.00234 * 17 15 13 21 21 C 1.47397 * 115.32015 * 66.13858 * 6 5 4 22 22 C 1.51083 * 107.93208 * 271.08502 * 21 6 5 23 23 S 1.82264 * 110.47479 * 96.74224 * 22 21 6 24 24 H 1.08998 * 109.47857 * 300.75843 * 1 2 3 25 25 H 1.09005 * 109.47148 * 60.76465 * 1 2 3 26 26 H 1.09004 * 109.47140 * 180.75733 * 1 2 3 27 27 H 1.09002 * 109.47574 * 168.88338 * 3 2 1 28 28 H 1.08999 * 109.47245 * 288.88655 * 3 2 1 29 29 H 1.09007 * 109.47193 * 48.88940 * 3 2 1 30 30 H 1.08996 * 109.52343 * 95.19167 * 4 2 1 31 31 H 1.09008 * 109.56939 * 335.03805 * 4 2 1 32 32 H 1.08995 * 108.78769 * 155.08194 * 5 4 2 33 33 H 1.09008 * 108.78178 * 36.88163 * 5 4 2 34 34 H 1.09004 * 109.46935 * 316.39363 * 7 6 5 35 35 H 1.09000 * 109.47377 * 196.39047 * 7 6 5 36 36 H 1.09001 * 109.46866 * 295.00163 * 12 8 7 37 37 H 1.09000 * 109.47456 * 54.99750 * 12 8 7 38 38 H 0.96999 * 119.99949 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.76689 * 30.69988 * 21 6 5 40 40 H 1.09006 * 109.76687 * 151.48173 * 21 6 5 41 41 H 1.08994 * 109.30459 * 336.43303 * 22 21 6 42 42 H 1.09002 * 109.13836 * 216.93977 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0319 1.4453 0.0000 4 6 2.0254 -0.6965 1.2443 5 6 3.3146 -0.0097 1.7286 6 7 4.4522 -0.4726 1.0797 7 6 5.6697 -0.0383 1.7773 8 6 5.8725 -0.8933 3.0298 9 1 4.9887 -0.8240 3.6641 10 6 6.0858 -2.2959 2.6371 11 7 6.2504 -3.3782 2.3341 12 6 7.0940 -0.3879 3.8002 13 6 7.2220 -1.1492 5.0944 14 1 6.5037 -1.9166 5.3429 15 6 8.2561 -0.8662 5.9614 16 7 9.1305 0.0685 5.6590 17 14 8.4143 -1.8094 7.5659 18 1 8.5757 -3.2569 7.2754 19 1 9.6006 -1.3198 8.3129 20 1 7.1929 -1.6021 8.3846 21 6 4.5280 -0.1611 -0.3590 22 6 3.8538 -1.2827 -1.1140 23 16 2.1294 -0.8412 -1.5058 24 1 -0.3635 0.5255 0.8830 25 1 -0.3634 0.5019 -0.8968 26 1 -0.3633 -1.0276 0.0136 27 1 3.1037 1.4578 0.1981 28 1 1.8369 1.8977 -0.9723 29 1 1.5128 2.0103 0.7743 30 1 2.2328 -1.7424 1.0182 31 1 1.2656 -0.6361 2.0237 32 1 3.4251 -0.1851 2.7987 33 1 3.2257 1.0634 1.5585 34 1 5.5702 1.0086 2.0644 35 1 6.5283 -0.1536 1.1158 36 1 7.9907 -0.5394 3.1993 37 1 6.9749 0.6743 4.0137 38 1 9.8577 0.2679 6.2691 39 1 4.0150 0.7793 -0.5600 40 1 5.5714 -0.0855 -0.6653 41 1 3.8648 -2.1856 -0.5035 42 1 4.3977 -1.4675 -2.0403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331994448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:09 Heat of formation + Delta-G solvation = 28.757459 kcal Electronic energy + Delta-G solvation = -20669.603090 eV Core-core repulsion = 17775.935768 eV Total energy + Delta-G solvation = -2893.667322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.92815 -38.14746 -36.48886 -35.46844 -33.81869 -32.10384 -30.17116 -28.60019 -28.01312 -25.01162 -24.42874 -23.36485 -22.52223 -20.53558 -18.56936 -18.15090 -17.62682 -17.12183 -16.77244 -16.38450 -15.99831 -15.42910 -15.12254 -14.89865 -14.59498 -14.25571 -14.04607 -13.92775 -13.73945 -13.62040 -13.32654 -13.16665 -13.01372 -12.88673 -12.63085 -12.57435 -12.42433 -12.32212 -12.17921 -11.83865 -11.81721 -11.55714 -11.35026 -11.29935 -11.09673 -10.54112 -10.48344 -8.96206 -8.63274 -8.18875 -6.26735 0.80206 1.40970 1.42982 1.49630 1.61814 2.09075 2.16924 2.41766 2.87345 3.16832 3.37475 3.68543 3.74210 4.00032 4.09303 4.12772 4.18416 4.27251 4.39704 4.49117 4.51330 4.64110 4.73017 4.74882 4.76520 4.83755 4.87741 4.92438 4.94341 5.01538 5.02852 5.16345 5.22167 5.27813 5.42523 5.47806 5.63408 5.80159 6.08531 6.23600 6.54690 6.84369 6.95927 7.41810 8.91654 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.030111 B = 0.003841 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.681714 B = 7288.240526 C = 7448.963859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.008 4.008 3 C -0.161 4.161 4 C -0.112 4.112 5 C 0.046 3.954 6 N -0.572 5.572 7 C 0.080 3.920 8 C 0.022 3.978 9 H 0.113 0.887 10 C 0.268 3.732 11 N -0.518 5.518 12 C 0.039 3.961 13 C -0.539 4.539 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.922 5.922 17 Si 0.945 3.055 18 H -0.283 1.283 19 H -0.282 1.282 20 H -0.263 1.263 21 C 0.046 3.954 22 C -0.062 4.062 23 S -0.315 6.315 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.001 0.999 37 H 0.037 0.963 38 H 0.264 0.736 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.042 6.558 -11.609 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.117 4.117 3 C -0.219 4.219 4 C -0.151 4.151 5 C -0.083 4.083 6 N -0.296 5.296 7 C -0.048 4.048 8 C 0.000 4.000 9 H 0.131 0.869 10 C -0.048 4.048 11 N -0.196 5.196 12 C 0.000 4.000 13 C -0.577 4.577 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.562 5.562 17 Si 0.771 3.229 18 H -0.209 1.209 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.081 4.081 22 C -0.211 4.211 23 S -0.088 6.088 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.020 0.980 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.246 4.342 -12.933 21.214 hybrid contribution 1.181 0.429 2.021 2.380 sum -15.065 4.770 -10.912 19.204 Atomic orbital electron populations 1.21786 0.90686 1.02754 1.03242 1.22475 0.99318 0.97373 0.92569 1.22810 1.02634 0.93300 1.03149 1.21809 0.97380 0.99328 0.96600 1.21141 0.89053 0.98989 0.99084 1.58019 1.02882 1.66007 1.02699 1.22100 0.91827 0.97336 0.93497 1.19229 1.01791 0.81618 0.97381 0.86894 1.29371 0.90261 0.94963 0.90213 1.80985 1.11910 1.14161 1.12505 1.18982 0.91088 0.96863 0.93094 1.21516 1.11400 1.19995 1.04828 0.93030 1.25662 0.95560 0.95955 1.01315 1.70014 1.15539 1.32474 1.38189 0.85806 0.78104 0.78652 0.80364 1.20860 1.20717 1.18748 1.22493 1.02229 0.97237 0.86119 1.23239 0.92608 1.01625 1.03638 1.86939 1.16650 1.77278 1.27887 0.89391 0.92029 0.92343 0.89983 0.91746 0.90135 0.92462 0.88578 0.90594 0.91977 0.90420 0.90229 0.98032 0.94486 0.92717 0.89634 0.89052 0.90801 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.17 71.98 0.59 -1.24 16 2 C -0.01 -0.14 0.83 -11.46 -0.01 -0.15 16 3 C -0.16 -2.34 6.58 71.98 0.47 -1.87 16 4 C -0.11 -2.12 5.02 30.23 0.15 -1.97 16 5 C 0.05 0.91 4.57 88.03 0.40 1.32 16 6 N -0.57 -13.06 3.40 -916.53 -3.12 -16.18 16 7 C 0.08 2.06 4.40 86.30 0.38 2.44 16 8 C 0.02 0.75 2.24 -12.60 -0.03 0.72 16 9 H 0.11 3.60 6.63 -2.39 -0.02 3.58 16 10 C 0.27 10.85 13.63 89.44 1.22 12.07 16 11 N -0.52 -23.22 18.54 20.01 0.37 -22.84 16 12 C 0.04 1.72 4.42 29.85 0.13 1.85 16 13 C -0.54 -28.10 8.60 25.60 0.22 -27.88 16 14 H 0.05 2.68 7.59 -2.91 -0.02 2.65 16 15 C 0.01 0.77 5.46 84.65 0.46 1.23 16 16 N -0.92 -52.16 13.29 21.45 0.28 -51.87 16 17 Si 0.94 42.97 29.54 68.60 2.03 44.99 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 C 0.05 0.92 5.36 85.58 0.46 1.38 16 22 C -0.06 -1.37 5.85 71.36 0.42 -0.95 16 23 S -0.31 -6.83 20.87 -56.49 -1.18 -8.01 16 24 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 25 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 1.26 2.77 -2.39 -0.01 1.26 16 28 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 29 H 0.08 0.95 8.08 -2.38 -0.02 0.93 16 30 H 0.06 1.39 7.18 -2.39 -0.02 1.37 16 31 H 0.10 1.53 7.69 -2.38 -0.02 1.51 16 32 H 0.08 1.60 6.30 -2.39 -0.02 1.59 16 33 H 0.06 1.04 4.71 -2.38 -0.01 1.03 16 34 H 0.08 1.72 7.97 -2.38 -0.02 1.70 16 35 H 0.08 2.07 7.35 -2.39 -0.02 2.05 16 36 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 39 H 0.09 1.51 4.05 -2.39 -0.01 1.50 16 40 H 0.09 1.71 7.27 -2.38 -0.02 1.70 16 41 H 0.07 1.98 7.56 -2.39 -0.02 1.96 16 42 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -62.30 332.43 4.26 -58.04 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.01 Total: 8.93 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.87 Total: -13.06 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -2.46 Total: -90.90 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -6.83 SS G_CDS: -1.18 Total: -8.01 kcal Total: -62.30 4.26 -58.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331994448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.801 kcal (2) G-P(sol) polarization free energy of solvation -62.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds