Wall clock time and date at job start Tue Mar 31 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.38911 * 2 1 4 4 C 1.55294 * 109.42834 * 119.87165 * 2 1 3 5 5 C 1.45391 * 109.79018 * 48.80226 * 4 2 1 6 6 N 1.46822 * 115.63909 * 63.62124 * 5 4 2 7 7 C 1.46903 * 110.99977 * 142.13691 * 6 5 4 8 8 C 1.53000 * 109.47136 * 69.80766 * 7 6 5 9 9 H 1.08992 * 109.46931 * 53.54971 * 8 7 6 10 10 C 1.47202 * 109.46875 * 293.55081 * 8 7 6 11 11 N 5.15968 * 68.15578 * 134.16301 * 2 1 3 12 12 C 1.53002 * 109.46992 * 173.55275 * 8 7 6 13 13 C 1.50704 * 109.46801 * 184.99839 * 12 8 7 14 14 H 1.07997 * 120.00322 * 359.97438 * 13 12 8 15 15 C 1.37878 * 119.99419 * 179.97438 * 13 12 8 16 16 N 1.31510 * 120.00264 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99514 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47432 * 90.00304 * 17 15 13 19 19 H 1.48505 * 109.47229 * 210.00365 * 17 15 13 20 20 H 1.48502 * 109.47352 * 329.99920 * 17 15 13 21 21 C 1.45581 * 105.38221 * 262.38040 * 6 5 4 22 22 C 1.54647 * 108.47555 * 107.72549 * 21 6 5 23 23 S 1.79441 * 109.49136 * 240.14570 * 2 1 3 24 24 H 1.09002 * 109.47158 * 267.85727 * 1 2 3 25 25 H 1.09001 * 109.46744 * 27.85776 * 1 2 3 26 26 H 1.08999 * 109.47031 * 147.85832 * 1 2 3 27 27 H 1.08997 * 109.47743 * 179.86627 * 3 2 1 28 28 H 1.09006 * 109.47153 * 299.87325 * 3 2 1 29 29 H 1.09000 * 109.46831 * 59.86551 * 3 2 1 30 30 H 1.09003 * 109.40613 * 288.72658 * 4 2 1 31 31 H 1.08994 * 109.40780 * 168.88085 * 4 2 1 32 32 H 1.08995 * 108.24454 * 185.22383 * 5 4 2 33 33 H 1.09007 * 108.24677 * 302.21893 * 5 4 2 34 34 H 1.09004 * 109.47215 * 189.81343 * 7 6 5 35 35 H 1.09003 * 109.46653 * 309.80595 * 7 6 5 36 36 H 1.08996 * 109.46874 * 304.99962 * 12 8 7 37 37 H 1.08997 * 109.47304 * 65.00039 * 12 8 7 38 38 H 0.97005 * 119.99844 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.63929 * 227.42065 * 21 6 5 40 40 H 1.09001 * 109.63472 * 348.03012 * 21 6 5 41 41 H 1.09003 * 109.25844 * 81.54023 * 22 21 6 42 42 H 1.08994 * 109.26477 * 200.99214 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0379 1.4432 0.0000 4 6 2.0465 -0.7294 1.2699 5 6 1.3605 -2.0025 1.4197 6 7 1.5945 -2.9800 0.3495 7 6 1.6889 -4.3420 0.8918 8 6 0.3124 -4.7902 1.3873 9 1 -0.4186 -4.6689 0.5880 10 6 -0.0839 -3.9698 2.5434 11 7 -0.3898 -3.3367 3.4356 12 6 0.3743 -6.2613 1.8031 13 6 -1.0067 -6.7367 2.1746 14 1 -1.8445 -6.0575 2.1201 15 6 -1.2004 -8.0390 2.5842 16 7 -0.1801 -8.8659 2.6511 17 14 -2.9122 -8.6285 3.0440 18 1 -3.5902 -9.1689 1.8384 19 1 -2.8090 -9.6939 4.0733 20 1 -3.6985 -7.4912 3.5861 21 6 0.4535 -2.8529 -0.5458 22 6 0.9249 -2.1594 -1.8451 23 16 2.1287 -0.8421 -1.4671 24 1 -0.3633 -0.0384 1.0270 25 1 -0.3633 0.9086 -0.4802 26 1 -0.3633 -0.8702 -0.5467 27 1 3.1279 1.4449 0.0024 28 1 1.6757 1.9559 -0.8912 29 1 1.6718 1.9571 0.8888 30 1 1.8557 -0.1099 2.1463 31 1 3.1183 -0.9043 1.1764 32 1 1.6721 -2.4490 2.3639 33 1 0.2891 -1.8087 1.4730 34 1 2.0330 -5.0208 0.1115 35 1 2.3955 -4.3544 1.7216 36 1 0.7529 -6.8578 0.9731 37 1 1.0385 -6.3689 2.6606 38 1 -0.3163 -9.7820 2.9396 39 1 0.0601 -3.8420 -0.7805 40 1 -0.3205 -2.2512 -0.0694 41 1 1.3922 -2.8973 -2.4973 42 1 0.0642 -1.7249 -2.3535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331994456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:14 Heat of formation + Delta-G solvation = 44.608126 kcal Electronic energy + Delta-G solvation = -21020.563303 eV Core-core repulsion = 18127.583317 eV Total energy + Delta-G solvation = -2892.979985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.98240 -36.79364 -35.25830 -33.72855 -32.02903 -31.50305 -29.13973 -27.27378 -26.19933 -24.01082 -23.27646 -22.09958 -21.36244 -19.67866 -16.89969 -16.74029 -16.40993 -15.88872 -15.55001 -15.16094 -14.50735 -14.32401 -14.17758 -13.65280 -13.31213 -13.18285 -13.06375 -12.65098 -12.33433 -12.26549 -12.13134 -11.82077 -11.64462 -11.51449 -11.39385 -11.29819 -11.19727 -10.97194 -10.80361 -10.69900 -10.60494 -10.34613 -10.25834 -9.80435 -9.46174 -9.38456 -8.52212 -8.26351 -7.29234 -6.15962 -4.20183 1.80265 2.77920 3.23459 3.30963 3.34601 3.43022 3.48087 3.98669 4.34401 4.45489 4.64444 4.67508 4.80799 4.89413 4.99685 5.21717 5.23135 5.28197 5.35576 5.36444 5.48029 5.54164 5.58766 5.67953 5.68703 5.74264 5.76412 5.85946 5.90109 5.97427 6.04737 6.12360 6.25240 6.32402 6.37896 7.02640 7.13671 7.34907 7.43753 7.77512 8.14990 8.26158 8.83922 9.45849 10.94510 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031630 B = 0.004203 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.025134 B = 6660.082248 C = 6869.832489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.032 4.032 3 C -0.124 4.124 4 C -0.095 4.095 5 C 0.027 3.973 6 N -0.496 5.496 7 C 0.056 3.944 8 C -0.036 4.036 9 H 0.104 0.896 10 C 0.241 3.759 11 N -0.472 5.472 12 C 0.035 3.965 13 C -0.530 4.530 14 H 0.054 0.946 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.011 3.989 22 C -0.072 4.072 23 S -0.231 6.231 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.026 0.974 38 H 0.263 0.737 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 15.671 -8.816 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.142 4.142 3 C -0.183 4.183 4 C -0.135 4.135 5 C -0.101 4.101 6 N -0.217 5.217 7 C -0.073 4.073 8 C -0.059 4.059 9 H 0.122 0.878 10 C -0.076 4.076 11 N -0.150 5.150 12 C -0.004 4.004 13 C -0.568 4.568 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.119 4.119 22 C -0.221 4.221 23 S -0.003 6.003 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.167 16.779 -8.253 19.399 hybrid contribution -2.803 -1.346 1.222 3.341 sum 2.364 15.433 -7.031 17.123 Atomic orbital electron populations 1.22640 0.93638 1.03303 1.02920 1.22798 0.97733 0.97676 0.96013 1.21705 1.01588 0.92808 1.02194 1.20875 1.01775 0.95217 0.95642 1.21263 0.99716 0.93946 0.95148 1.63388 1.38995 1.04494 1.14846 1.22653 0.95260 0.88753 1.00598 1.20103 0.97912 0.97505 0.90396 0.87822 1.29150 0.92343 0.91622 0.94448 1.81055 1.09748 1.12891 1.11256 1.19132 0.98236 0.85093 0.97944 1.21123 0.93496 0.96268 1.45926 0.92758 1.24943 0.96895 0.96800 0.95179 1.69931 1.30096 1.05742 1.46992 0.86610 0.84567 0.78604 0.78420 1.20395 1.21053 1.19948 1.23220 0.92858 1.01819 0.93999 1.23989 1.00000 0.98226 0.99869 1.85799 1.41471 1.38119 1.34865 0.91793 0.91835 0.90701 0.91970 0.91831 0.91678 0.91192 0.90180 0.91671 0.93342 0.88196 0.89994 0.94168 0.95577 0.92700 0.89340 0.91231 0.87890 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 7.57 37.16 0.28 -1.48 16 2 C -0.03 -0.35 0.85 -89.41 -0.08 -0.42 16 3 C -0.12 -1.15 8.26 37.16 0.31 -0.84 16 4 C -0.10 -1.13 4.62 -29.10 -0.13 -1.26 16 5 C 0.03 0.37 3.03 -7.45 -0.02 0.35 16 6 N -0.50 -6.50 4.17 -239.23 -1.00 -7.50 16 7 C 0.06 0.81 4.97 -3.82 -0.02 0.79 16 8 C -0.04 -0.63 1.83 -93.41 -0.17 -0.80 16 9 H 0.10 1.69 5.77 -51.93 -0.30 1.39 16 10 C 0.24 4.67 10.37 -20.76 -0.22 4.45 16 11 N -0.47 -9.85 17.93 42.15 0.76 -9.10 16 12 C 0.03 0.78 4.42 -27.88 -0.12 0.65 16 13 C -0.53 -13.83 8.60 -34.44 -0.30 -14.12 16 14 H 0.05 1.42 7.59 -52.49 -0.40 1.02 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 17 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.01 0.13 4.18 -3.67 -0.02 0.12 16 22 C -0.07 -0.77 5.88 38.02 0.22 -0.55 16 23 S -0.23 -2.75 20.14 -107.50 -2.17 -4.91 16 24 H 0.06 0.71 6.96 -51.93 -0.36 0.35 16 25 H 0.06 0.60 7.78 -51.93 -0.40 0.19 16 26 H 0.07 0.81 3.24 -51.93 -0.17 0.64 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 31 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 32 H 0.06 1.00 5.99 -51.93 -0.31 0.69 16 33 H 0.05 0.70 3.87 -51.92 -0.20 0.50 16 34 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.20 7.77 -51.93 -0.40 0.80 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.09 1.04 5.87 -51.93 -0.30 0.73 16 40 H 0.07 0.86 3.99 -51.93 -0.21 0.65 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 0.73 7.75 -51.93 -0.40 0.33 16 LS Contribution 324.52 15.07 4.89 4.89 Total: -1.00 -28.74 324.52 -8.56 -37.29 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.40 Total: -0.80 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -0.36 Total: -11.47 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.50 Total: -40.99 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.17 Total: -4.91 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.74 -8.56 -37.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331994456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.902 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds