Wall clock time and date at job start Tue Mar 31 2020 06:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.33322 * 125.95602 * 119.99620 * 4 2 1 6 6 N 1.32113 * 114.58157 * 179.97438 * 5 4 2 7 7 C 1.29683 * 116.87039 * 0.02562 * 6 5 4 8 8 N 1.38611 * 124.95399 * 180.02562 * 7 6 5 9 9 C 1.46497 * 119.99709 * 359.97438 * 8 7 6 10 10 C 1.53002 * 109.46756 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47178 * 299.99560 * 10 9 8 12 12 C 1.52998 * 109.47441 * 59.99876 * 10 9 8 13 13 C 1.53002 * 109.47029 * 179.97438 * 10 9 8 14 14 C 1.50697 * 109.47240 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99899 * 359.97438 * 14 13 10 16 16 C 1.37882 * 120.00256 * 180.02562 * 14 13 10 17 17 N 1.31508 * 119.99693 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00093 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47241 * 59.99991 * 18 16 14 20 20 H 1.48503 * 109.47026 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47395 * 299.99973 * 18 16 14 22 22 S 1.70971 * 110.09563 * 359.72141 * 7 6 5 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08003 * 122.70499 * 0.02562 * 5 4 2 31 31 H 0.97002 * 120.00176 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.47023 * 299.99183 * 9 8 7 33 33 H 1.08998 * 109.47359 * 60.00222 * 9 8 7 34 34 H 1.08997 * 109.47078 * 60.00471 * 11 10 9 35 35 H 1.08999 * 109.47380 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47548 * 300.00114 * 11 10 9 37 37 H 1.08998 * 109.47499 * 59.99483 * 12 10 9 38 38 H 1.08999 * 109.47366 * 180.02562 * 12 10 9 39 39 H 1.09005 * 109.46936 * 300.00027 * 12 10 9 40 40 H 1.09003 * 109.47431 * 299.99841 * 13 10 9 41 41 H 1.09003 * 109.47199 * 59.99987 * 13 10 9 42 42 H 0.97001 * 120.00124 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8020 -1.7990 1.2465 6 7 3.1114 -2.2356 2.4544 7 6 2.6378 -1.5659 3.4588 8 7 2.8566 -1.8736 4.7925 9 6 3.6772 -3.0329 5.1516 10 6 3.7599 -3.1469 6.6751 11 6 4.3927 -1.8772 7.2479 12 6 2.3529 -3.3199 7.2508 13 6 4.6163 -4.3580 7.0502 14 6 4.6983 -4.4699 8.5507 15 1 4.1907 -3.7490 9.1746 16 6 5.4222 -5.4920 9.1273 17 7 6.0415 -6.3689 8.3677 18 14 5.5244 -5.6303 10.9874 19 1 4.1592 -5.7975 11.5471 20 1 6.3566 -6.8051 11.3514 21 1 6.1393 -4.3977 11.5424 22 16 1.7110 -0.2430 2.8983 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.1455 -2.2842 0.3447 31 1 2.4665 -1.3214 5.4881 32 1 3.2265 -3.9375 4.7432 33 1 4.6797 -2.9094 4.7419 34 1 3.7823 -1.0146 6.9808 35 1 4.4512 -1.9581 8.3333 36 1 5.3951 -1.7539 6.8379 37 1 1.9020 -4.2244 6.8427 38 1 2.4118 -3.4006 8.3362 39 1 1.7424 -2.4573 6.9836 40 1 4.1651 -5.2625 6.6422 41 1 5.6187 -4.2352 6.6400 42 1 6.5511 -7.0877 8.7733 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340904889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:58 Heat of formation + Delta-G solvation = 14.838086 kcal Electronic energy + Delta-G solvation = -19727.460061 eV Core-core repulsion = 16833.189150 eV Total energy + Delta-G solvation = -2894.270911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.59456 -37.78059 -35.88868 -33.96069 -32.18327 -28.55447 -27.35419 -27.08168 -26.53472 -26.37392 -24.08226 -22.71628 -21.40655 -19.46169 -18.86816 -17.49150 -16.40247 -16.31710 -15.02436 -14.99887 -14.65631 -14.31507 -14.27529 -13.93189 -13.49275 -13.26975 -13.09537 -12.78077 -12.49390 -12.27633 -12.07384 -11.73170 -11.52418 -11.45607 -11.22521 -11.02292 -10.88137 -10.83614 -10.65788 -10.42365 -10.27955 -10.04561 -9.68881 -9.40817 -9.15575 -9.04443 -8.95330 -8.36834 -7.45594 -6.00988 -4.02421 1.15438 1.23603 1.90066 3.16833 3.31342 3.36771 3.37762 3.47377 4.44035 4.61504 4.74292 4.89826 4.96890 5.33132 5.34424 5.39610 5.46093 5.56303 5.60605 5.60796 5.72824 5.78521 5.84130 6.02800 6.06087 6.14138 6.14922 6.19675 6.29211 6.37797 6.60914 6.63557 6.98054 7.05278 7.05671 7.20068 7.34492 7.62300 7.74540 7.97413 8.22495 8.39204 9.01998 9.60678 11.10448 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.048381 B = 0.003018 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.600610 B = 9275.266622 C = 9481.595850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.006 4.006 3 C -0.146 4.146 4 C -0.269 4.269 5 C 0.090 3.910 6 N -0.554 5.554 7 C 0.330 3.670 8 N -0.684 5.684 9 C 0.144 3.856 10 C -0.073 4.073 11 C -0.127 4.127 12 C -0.127 4.127 13 C 0.038 3.962 14 C -0.512 4.512 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 S 0.064 5.936 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.167 0.833 31 H 0.411 0.589 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.019 14.153 -14.303 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 C -0.203 4.203 4 C -0.393 4.393 5 C -0.060 4.060 6 N -0.280 5.280 7 C -0.042 4.042 8 N -0.322 5.322 9 C 0.019 3.981 10 C -0.074 4.074 11 C -0.184 4.184 12 C -0.184 4.184 13 C 0.000 4.000 14 C -0.551 4.551 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 S 0.313 5.687 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.184 0.816 31 H 0.249 0.751 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.006 14.151 -13.625 22.046 hybrid contribution 0.354 -0.508 0.592 0.857 sum -9.652 13.643 -13.033 21.193 Atomic orbital electron populations 1.21903 0.94576 1.02135 1.01717 1.19402 0.95352 0.95147 0.92822 1.21903 1.01463 0.95255 1.01719 1.25123 1.13077 1.05008 0.96052 1.21317 0.96291 0.93746 0.94685 1.66459 1.30453 1.33353 0.97737 1.23694 0.95687 0.93966 0.90838 1.44466 1.55279 1.32429 1.00070 1.21682 0.93977 0.86172 0.96295 1.20936 0.97004 0.98917 0.90495 1.21760 0.99344 0.94932 1.02391 1.21763 0.95058 0.99225 1.02384 1.19074 0.93947 0.90380 0.96561 1.21140 1.30978 1.11399 0.91549 0.92321 1.25008 0.95713 0.95914 0.97810 1.69950 1.33040 1.15444 1.34939 0.86708 0.78003 0.77476 0.86098 1.20318 1.21376 1.20324 1.83732 1.53561 1.30121 1.01273 0.92377 0.92655 0.92351 0.89688 0.92665 0.92350 0.92365 0.81573 0.75070 0.91819 0.91825 0.95383 0.91362 0.93288 0.93287 0.91360 0.95386 0.96310 0.96314 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.14 37.16 0.34 -0.81 16 2 C -0.01 -0.05 3.32 -91.77 -0.30 -0.36 16 3 C -0.15 -1.15 9.13 37.15 0.34 -0.81 16 4 C -0.27 -3.12 5.13 -36.02 -0.18 -3.30 16 5 C 0.09 1.19 11.21 -19.15 -0.21 0.98 16 6 N -0.55 -9.00 10.14 -15.21 -0.15 -9.16 16 7 C 0.33 4.99 8.09 -87.68 -0.71 4.28 16 8 N -0.68 -10.29 5.12 -62.30 -0.32 -10.61 16 9 C 0.14 2.53 4.84 -4.04 -0.02 2.51 16 10 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 11 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 12 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 13 C 0.04 0.93 4.04 -27.88 -0.11 0.81 16 14 C -0.51 -13.57 7.65 -34.44 -0.26 -13.83 16 15 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 S 0.06 0.78 22.96 -107.50 -2.47 -1.69 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.05 0.46 8.05 -51.93 -0.42 0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.17 1.81 8.06 -52.48 -0.42 1.38 16 31 H 0.41 5.48 6.29 -40.82 -0.26 5.22 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 35 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -29.33 347.95 -9.69 -39.03 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.00 Total: 1.06 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -0.71 Total: -14.41 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.26 Total: -45.40 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.47 Total: -1.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.33 -9.69 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340904889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.866 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds