Wall clock time and date at job start Tue Mar 31 2020 06:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.33322 * 125.95602 * 119.99620 * 4 2 1 6 6 N 1.32113 * 114.58157 * 179.97438 * 5 4 2 7 7 C 1.29683 * 116.87039 * 0.02562 * 6 5 4 8 8 N 1.38611 * 124.95399 * 180.02562 * 7 6 5 9 9 C 1.46497 * 119.99709 * 359.97438 * 8 7 6 10 10 C 1.53002 * 109.46756 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47178 * 299.99560 * 10 9 8 12 12 C 1.52998 * 109.47441 * 59.99876 * 10 9 8 13 13 C 1.53002 * 109.47029 * 179.97438 * 10 9 8 14 14 C 1.50697 * 109.47240 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99899 * 359.97438 * 14 13 10 16 16 C 1.37882 * 120.00256 * 180.02562 * 14 13 10 17 17 N 1.31508 * 119.99693 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00093 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47241 * 59.99991 * 18 16 14 20 20 H 1.48503 * 109.47026 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47395 * 299.99973 * 18 16 14 22 22 S 1.70971 * 110.09563 * 359.72141 * 7 6 5 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08003 * 122.70499 * 0.02562 * 5 4 2 31 31 H 0.97002 * 120.00176 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.47023 * 299.99183 * 9 8 7 33 33 H 1.08998 * 109.47359 * 60.00222 * 9 8 7 34 34 H 1.08997 * 109.47078 * 60.00471 * 11 10 9 35 35 H 1.08999 * 109.47380 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47548 * 300.00114 * 11 10 9 37 37 H 1.08998 * 109.47499 * 59.99483 * 12 10 9 38 38 H 1.08999 * 109.47366 * 180.02562 * 12 10 9 39 39 H 1.09005 * 109.46936 * 300.00027 * 12 10 9 40 40 H 1.09003 * 109.47431 * 299.99841 * 13 10 9 41 41 H 1.09003 * 109.47199 * 59.99987 * 13 10 9 42 42 H 0.97001 * 120.00124 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8020 -1.7990 1.2465 6 7 3.1114 -2.2356 2.4544 7 6 2.6378 -1.5659 3.4588 8 7 2.8566 -1.8736 4.7925 9 6 3.6772 -3.0329 5.1516 10 6 3.7599 -3.1469 6.6751 11 6 4.3927 -1.8772 7.2479 12 6 2.3529 -3.3199 7.2508 13 6 4.6163 -4.3580 7.0502 14 6 4.6983 -4.4699 8.5507 15 1 4.1907 -3.7490 9.1746 16 6 5.4222 -5.4920 9.1273 17 7 6.0415 -6.3689 8.3677 18 14 5.5244 -5.6303 10.9874 19 1 4.1592 -5.7975 11.5471 20 1 6.3566 -6.8051 11.3514 21 1 6.1393 -4.3977 11.5424 22 16 1.7110 -0.2430 2.8983 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.1455 -2.2842 0.3447 31 1 2.4665 -1.3214 5.4881 32 1 3.2265 -3.9375 4.7432 33 1 4.6797 -2.9094 4.7419 34 1 3.7823 -1.0146 6.9808 35 1 4.4512 -1.9581 8.3333 36 1 5.3951 -1.7539 6.8379 37 1 1.9020 -4.2244 6.8427 38 1 2.4118 -3.4006 8.3362 39 1 1.7424 -2.4573 6.9836 40 1 4.1651 -5.2625 6.6422 41 1 5.6187 -4.2352 6.6400 42 1 6.5511 -7.0877 8.7733 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340904889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:57 Heat of formation + Delta-G solvation = -0.617858 kcal Electronic energy + Delta-G solvation = -19728.130281 eV Core-core repulsion = 16833.189150 eV Total energy + Delta-G solvation = -2894.941131 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69819 -39.21471 -36.80660 -35.36795 -34.05242 -29.75112 -28.86689 -27.99484 -27.96252 -27.75398 -25.47625 -24.34767 -22.24977 -20.57510 -20.17289 -18.80461 -18.34814 -17.46793 -16.50565 -16.23419 -16.14339 -15.52056 -15.26000 -15.00109 -14.70699 -14.56688 -14.25880 -14.20665 -13.95041 -13.73816 -13.04376 -12.87348 -12.75866 -12.64220 -12.55963 -12.35141 -12.30347 -12.23445 -12.09158 -12.00882 -11.60214 -11.57972 -11.04588 -10.95520 -10.88057 -10.51026 -10.38300 -10.04627 -8.56058 -8.14307 -6.22194 0.11695 0.18652 0.90130 1.42148 1.44139 1.51380 2.09646 2.32576 2.45260 3.20008 3.74882 3.90364 3.98457 4.07294 4.08249 4.21828 4.31589 4.63314 4.66904 4.71736 4.73476 4.76975 4.82230 4.93689 5.01457 5.04923 5.09506 5.09984 5.15892 5.27926 5.40606 5.41521 5.42492 5.47907 5.50227 5.54482 5.78632 5.87793 5.92336 6.24887 6.31093 6.92439 7.16965 7.45450 8.98060 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.048381 B = 0.003018 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.600610 B = 9275.266622 C = 9481.595850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.009 4.009 3 C -0.144 4.144 4 C -0.253 4.253 5 C 0.061 3.939 6 N -0.588 5.588 7 C 0.299 3.701 8 N -0.682 5.682 9 C 0.165 3.835 10 C -0.065 4.065 11 C -0.121 4.121 12 C -0.121 4.121 13 C 0.043 3.957 14 C -0.515 4.515 15 H 0.072 0.928 16 C -0.004 4.004 17 N -0.938 5.938 18 Si 0.958 3.042 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.267 1.267 22 S 0.114 5.886 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.183 0.817 31 H 0.420 0.580 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.056 0.944 39 H 0.065 0.935 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 16.702 -14.577 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 C -0.202 4.202 4 C -0.376 4.376 5 C -0.088 4.088 6 N -0.315 5.315 7 C -0.072 4.072 8 N -0.323 5.323 9 C 0.038 3.962 10 C -0.065 4.065 11 C -0.178 4.178 12 C -0.178 4.178 13 C 0.005 3.995 14 C -0.553 4.553 15 H 0.090 0.910 16 C -0.201 4.201 17 N -0.579 5.579 18 Si 0.783 3.217 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.192 1.192 22 S 0.364 5.636 23 H 0.097 0.903 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.118 0.882 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.200 0.800 31 H 0.260 0.740 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.005 0.995 41 H 0.005 0.995 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.832 16.737 -13.914 24.774 hybrid contribution 0.864 -1.231 0.497 1.584 sum -10.967 15.506 -13.417 23.254 Atomic orbital electron populations 1.21894 0.93657 1.02029 1.02564 1.19597 0.96029 0.95543 0.91848 1.21893 1.01099 0.94593 1.02567 1.25667 1.10909 1.03906 0.97155 1.21601 0.97777 0.95019 0.94403 1.66434 1.31262 1.34773 0.99037 1.23863 0.97249 0.95649 0.90467 1.44094 1.55651 1.31925 1.00678 1.21145 0.93345 0.86762 0.94937 1.20723 0.97028 0.97151 0.91646 1.21679 0.99407 0.95380 1.01322 1.21681 0.94347 1.00449 1.01314 1.18936 0.93072 0.91758 0.95711 1.21559 1.30074 1.11128 0.92586 0.91028 1.25939 0.95600 0.95771 1.02802 1.70110 1.34368 1.16359 1.37075 0.85605 0.78353 0.77553 0.80172 1.19165 1.21626 1.19182 1.83519 1.51625 1.27612 1.00891 0.90322 0.93089 0.92944 0.88200 0.93099 0.92943 0.90309 0.79999 0.73981 0.93795 0.93803 0.91652 0.92477 0.94374 0.94371 0.92476 0.91655 0.99518 0.99529 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.14 71.98 0.66 -1.19 16 2 C -0.01 -0.13 3.32 -11.54 -0.04 -0.17 16 3 C -0.14 -1.85 9.13 71.98 0.66 -1.19 16 4 C -0.25 -5.38 5.13 24.58 0.13 -5.25 16 5 C 0.06 1.57 11.21 83.54 0.94 2.50 16 6 N -0.59 -19.16 10.14 -202.03 -2.05 -21.21 16 7 C 0.30 8.81 8.09 179.32 1.45 10.26 16 8 N -0.68 -20.04 5.12 -351.02 -1.80 -21.84 16 9 C 0.16 5.97 4.84 86.38 0.42 6.39 16 10 C -0.06 -2.49 0.54 -52.18 -0.03 -2.52 16 11 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 12 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 13 C 0.04 2.20 4.04 29.85 0.12 2.32 16 14 C -0.52 -27.78 7.65 25.60 0.20 -27.58 16 15 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 16 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 17 N -0.94 -57.26 13.29 21.45 0.28 -56.97 16 18 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 S 0.11 2.52 22.96 -56.49 -1.30 1.23 16 23 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.70 8.08 -2.39 -0.02 0.68 16 25 H 0.05 0.74 8.14 -2.38 -0.02 0.73 16 26 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 27 H 0.05 0.70 8.05 -2.39 -0.02 0.68 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.18 3.83 8.06 -2.91 -0.02 3.80 16 31 H 0.42 10.30 6.29 -92.71 -0.58 9.72 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 35 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 39 H 0.06 1.76 6.86 -2.38 -0.02 1.74 16 40 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 42 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -65.50 347.95 3.70 -61.81 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.41 Total: 14.59 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 6.12 Total: -23.37 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -3.56 Total: -100.02 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.30 Total: 1.23 kcal Total: -65.50 3.70 -61.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340904889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.189 kcal (2) G-P(sol) polarization free energy of solvation -65.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds