Wall clock time and date at job start Tue Mar 31 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36183 * 126.46856 * 2 1 4 4 N 1.30386 * 108.68671 * 180.02562 * 3 2 1 5 5 C 1.34238 * 109.40337 * 0.02562 * 4 3 2 6 6 N 1.48076 * 125.94694 * 179.97438 * 5 4 3 7 7 O 1.21797 * 120.00143 * 0.02562 * 6 5 4 8 8 O 1.21808 * 119.99795 * 179.74877 * 6 5 4 9 9 C 1.35417 * 108.10261 * 0.22235 * 5 4 3 10 10 N 1.39574 * 126.63109 * 179.75155 * 9 5 4 11 11 C 1.46902 * 111.00158 * 173.80136 * 10 9 5 12 12 C 1.53003 * 109.47060 * 176.70258 * 11 10 9 13 13 C 1.53002 * 109.47067 * 299.99776 * 12 11 10 14 14 C 1.53002 * 109.46972 * 59.99887 * 12 11 10 15 15 C 1.52997 * 109.47078 * 179.97438 * 12 11 10 16 16 C 1.50706 * 109.47270 * 179.97438 * 15 12 11 17 17 H 1.08003 * 119.99751 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99974 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00139 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99712 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47248 * 60.00267 * 20 18 16 22 22 H 1.48501 * 109.47138 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47503 * 300.00093 * 20 18 16 24 24 H 1.09003 * 109.47282 * 98.04512 * 1 2 3 25 25 H 1.09002 * 109.47014 * 218.04379 * 1 2 3 26 26 H 1.08997 * 109.46747 * 338.04536 * 1 2 3 27 27 H 1.08005 * 125.65589 * 0.04334 * 3 2 1 28 28 H 1.00907 * 111.00184 * 297.75387 * 10 9 5 29 29 H 1.09000 * 109.47219 * 296.69980 * 11 10 9 30 30 H 1.09000 * 109.47381 * 56.70587 * 11 10 9 31 31 H 1.08999 * 109.46940 * 59.99934 * 13 12 11 32 32 H 1.09001 * 109.46950 * 179.97438 * 13 12 11 33 33 H 1.08995 * 109.47084 * 300.00347 * 13 12 11 34 34 H 1.09000 * 109.47283 * 60.00293 * 14 12 11 35 35 H 1.09002 * 109.46661 * 180.02562 * 14 12 11 36 36 H 1.08991 * 109.47007 * 299.99467 * 14 12 11 37 37 H 1.09000 * 109.47265 * 299.99761 * 15 12 11 38 38 H 1.09003 * 109.46925 * 60.00027 * 15 12 11 39 39 H 0.96993 * 120.00143 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2745 1.0952 0.0000 4 7 3.5161 0.6970 -0.0006 5 6 3.5540 -0.6449 -0.0015 6 7 4.7769 -1.4799 -0.0029 7 8 5.8747 -0.9522 -0.0028 8 8 4.6850 -2.6945 0.0010 9 6 2.2793 -1.1019 -0.0065 10 7 1.8734 -2.4373 -0.0139 11 6 0.4155 -2.5452 0.1304 12 6 0.0011 -4.0150 0.0355 13 6 0.4219 -4.5768 -1.3240 14 6 0.6842 -4.8105 1.1498 15 6 -1.5173 -4.1275 0.1865 16 6 -1.9256 -5.5751 0.0924 17 1 -1.1769 -6.3386 -0.0594 18 6 -3.2548 -5.9249 0.2013 19 7 -4.1664 -4.9953 0.3867 20 14 -3.7608 -7.7193 0.0853 21 1 -3.0969 -8.4917 1.1661 22 1 -5.2344 -7.8287 0.2330 23 1 -3.3533 -8.2644 -1.2346 24 1 -0.3634 -0.1438 -1.0176 25 1 -0.3633 -0.8093 0.6333 26 1 -0.3633 0.9531 0.3842 27 1 1.9430 2.1231 0.0007 28 1 2.1898 -2.9068 -0.8492 29 1 0.1157 -2.1450 1.0989 30 1 -0.0712 -1.9786 -0.6634 31 1 1.5037 -4.4967 -1.4311 32 1 0.1271 -5.6240 -1.3914 33 1 -0.0647 -4.0101 -2.1177 34 1 0.3844 -4.4103 2.1183 35 1 0.3893 -5.8576 1.0818 36 1 1.7659 -4.7304 1.0426 37 1 -1.8167 -3.7274 1.1552 38 1 -2.0043 -3.5607 -0.6070 39 1 -5.1014 -5.2414 0.4636 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340933459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:07 Heat of formation + Delta-G solvation = 70.163700 kcal Electronic energy + Delta-G solvation = -22823.101482 eV Core-core repulsion = 19384.936455 eV Total energy + Delta-G solvation = -3438.165027 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.03990 -41.44947 -38.39467 -36.24526 -35.15364 -34.20941 -32.39755 -29.62905 -28.61894 -27.19692 -26.62288 -25.53437 -25.45494 -22.98868 -21.75620 -21.29009 -19.11327 -18.33338 -18.14344 -17.61048 -16.96382 -16.49494 -16.26730 -15.60596 -15.22821 -14.79687 -14.48111 -14.19062 -13.70416 -13.44611 -13.01125 -12.75461 -12.18216 -12.14872 -11.39213 -11.30327 -11.20244 -11.08907 -10.96176 -10.91741 -10.86636 -10.73203 -10.64833 -10.36574 -10.31323 -10.12903 -9.89562 -9.33846 -9.09561 -8.48704 -8.39085 -6.13999 -4.14892 0.42124 1.29245 1.50657 2.17558 2.53039 3.24980 3.30152 3.32193 3.41668 4.10948 4.24735 4.32425 4.35415 4.70889 4.91023 4.98438 5.09132 5.23095 5.26624 5.37863 5.51957 5.74467 5.87860 6.04930 6.12218 6.37850 6.45092 6.55593 6.61383 6.66165 6.73453 6.91403 6.99289 7.05092 7.14561 7.41479 7.54016 7.84274 8.03057 8.26147 8.89121 9.49503 10.97492 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027881 B = 0.004137 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.021650 B = 6766.353174 C = 7561.899394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.476 5.476 3 C 0.215 3.785 4 N -0.436 5.436 5 C 0.000 4.000 6 N 0.078 4.922 7 O -0.163 6.163 8 O -0.156 6.156 9 C 0.301 3.699 10 N -0.570 5.570 11 C 0.039 3.961 12 C -0.060 4.060 13 C -0.136 4.136 14 C -0.125 4.125 15 C 0.037 3.963 16 C -0.512 4.512 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.098 0.902 27 H 0.229 0.771 28 H 0.382 0.618 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.846 11.166 -1.975 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.168 5.168 3 C -0.071 4.071 4 N -0.155 5.155 5 C -0.211 4.211 6 N 0.595 4.405 7 O -0.376 6.376 8 O -0.368 6.368 9 C 0.078 3.922 10 N -0.206 5.206 11 C -0.087 4.087 12 C -0.061 4.061 13 C -0.194 4.194 14 C -0.182 4.182 15 C -0.001 4.001 16 C -0.551 4.551 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.202 1.202 24 H 0.108 0.892 25 H 0.136 0.864 26 H 0.116 0.884 27 H 0.245 0.755 28 H 0.216 0.784 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.813 11.845 -1.343 13.730 hybrid contribution -1.188 -1.269 -0.694 1.872 sum 5.624 10.575 -2.037 12.150 Atomic orbital electron populations 1.23122 0.74186 1.07054 1.05558 1.46062 1.08827 1.05824 1.56043 1.25155 0.82953 0.93694 1.05250 1.69632 1.20728 1.07736 1.17439 1.19941 0.83319 0.90008 1.27788 1.42073 1.00570 1.00423 0.97437 1.94539 1.12398 1.76514 1.54197 1.94583 1.93388 0.94437 1.54357 1.19380 0.88987 0.85869 0.97968 1.57931 1.16369 1.03400 1.42904 1.23250 0.82728 1.01519 1.01220 1.20767 1.00004 0.89491 0.95801 1.21848 0.98004 1.03381 0.96121 1.21696 0.98608 1.00900 0.97000 1.19116 0.86307 0.97694 0.96959 1.21132 0.92163 0.92431 1.49326 0.92136 1.24987 0.96824 0.97221 0.95296 1.69927 1.01202 1.32616 1.49914 0.86691 0.77405 0.85437 0.78714 1.20178 1.21369 1.20236 0.89239 0.86426 0.88373 0.75451 0.78418 0.89569 0.92694 0.94584 0.90653 0.93720 0.93859 0.91775 0.93390 0.96512 0.96731 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 9.22 59.85 0.55 0.84 16 2 N -0.48 -4.71 3.19 -124.65 -0.40 -5.11 16 3 C 0.22 2.03 12.60 -89.42 -1.13 0.91 16 4 N -0.44 -6.12 11.22 -11.24 -0.13 -6.24 16 5 C 0.00 0.00 8.04 -145.13 -1.17 -1.16 16 6 N 0.08 1.35 4.46 32.78 0.15 1.50 16 7 O -0.16 -2.96 19.24 -29.46 -0.57 -3.53 16 8 O -0.16 -2.69 18.18 -29.46 -0.54 -3.23 16 9 C 0.30 3.97 7.30 -151.71 -1.11 2.86 16 10 N -0.57 -7.63 5.05 -59.81 -0.30 -7.93 16 11 C 0.04 0.52 2.87 -3.82 -0.01 0.51 16 12 C -0.06 -1.01 0.60 -154.51 -0.09 -1.11 16 13 C -0.14 -2.18 7.90 37.16 0.29 -1.88 16 14 C -0.12 -2.16 8.06 37.16 0.30 -1.86 16 15 C 0.04 0.80 4.04 -27.88 -0.11 0.69 16 16 C -0.51 -12.77 7.65 -34.44 -0.26 -13.03 16 17 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 18 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -24.82 13.29 55.43 0.74 -24.08 16 20 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H 0.09 0.57 7.54 -51.93 -0.39 0.17 16 25 H 0.12 0.99 4.35 -51.93 -0.23 0.77 16 26 H 0.10 0.38 8.13 -51.93 -0.42 -0.04 16 27 H 0.23 0.96 8.06 -52.48 -0.42 0.54 16 28 H 0.38 5.00 6.50 -39.29 -0.26 4.74 16 29 H 0.09 1.14 6.38 -51.93 -0.33 0.81 16 30 H 0.06 0.65 5.55 -51.93 -0.29 0.36 16 31 H 0.04 0.49 6.50 -51.93 -0.34 0.16 16 32 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.21 6.62 -51.93 -0.34 0.86 16 36 H 0.05 0.77 7.60 -51.93 -0.39 0.38 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -31.26 319.64 -8.96 -40.23 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.88 Total: 0.05 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.83 Total: -11.82 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.06 Total: -41.87 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -1.10 Total: -6.76 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.26 -8.96 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340933459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.391 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds