Wall clock time and date at job start Tue Mar 31 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36183 * 126.46856 * 2 1 4 4 N 1.30386 * 108.68671 * 180.02562 * 3 2 1 5 5 C 1.34238 * 109.40337 * 0.02562 * 4 3 2 6 6 N 1.48076 * 125.94694 * 179.97438 * 5 4 3 7 7 O 1.21797 * 120.00143 * 0.02562 * 6 5 4 8 8 O 1.21808 * 119.99795 * 179.74877 * 6 5 4 9 9 C 1.35417 * 108.10261 * 0.22235 * 5 4 3 10 10 N 1.39574 * 126.63109 * 179.75155 * 9 5 4 11 11 C 1.46902 * 111.00158 * 173.80136 * 10 9 5 12 12 C 1.53003 * 109.47060 * 176.70258 * 11 10 9 13 13 C 1.53002 * 109.47067 * 299.99776 * 12 11 10 14 14 C 1.53002 * 109.46972 * 59.99887 * 12 11 10 15 15 C 1.52997 * 109.47078 * 179.97438 * 12 11 10 16 16 C 1.50706 * 109.47270 * 179.97438 * 15 12 11 17 17 H 1.08003 * 119.99751 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99974 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00139 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99712 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47248 * 60.00267 * 20 18 16 22 22 H 1.48501 * 109.47138 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47503 * 300.00093 * 20 18 16 24 24 H 1.09003 * 109.47282 * 98.04512 * 1 2 3 25 25 H 1.09002 * 109.47014 * 218.04379 * 1 2 3 26 26 H 1.08997 * 109.46747 * 338.04536 * 1 2 3 27 27 H 1.08005 * 125.65589 * 0.04334 * 3 2 1 28 28 H 1.00907 * 111.00184 * 297.75387 * 10 9 5 29 29 H 1.09000 * 109.47219 * 296.69980 * 11 10 9 30 30 H 1.09000 * 109.47381 * 56.70587 * 11 10 9 31 31 H 1.08999 * 109.46940 * 59.99934 * 13 12 11 32 32 H 1.09001 * 109.46950 * 179.97438 * 13 12 11 33 33 H 1.08995 * 109.47084 * 300.00347 * 13 12 11 34 34 H 1.09000 * 109.47283 * 60.00293 * 14 12 11 35 35 H 1.09002 * 109.46661 * 180.02562 * 14 12 11 36 36 H 1.08991 * 109.47007 * 299.99467 * 14 12 11 37 37 H 1.09000 * 109.47265 * 299.99761 * 15 12 11 38 38 H 1.09003 * 109.46925 * 60.00027 * 15 12 11 39 39 H 0.96993 * 120.00143 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2745 1.0952 0.0000 4 7 3.5161 0.6970 -0.0006 5 6 3.5540 -0.6449 -0.0015 6 7 4.7769 -1.4799 -0.0029 7 8 5.8747 -0.9522 -0.0028 8 8 4.6850 -2.6945 0.0010 9 6 2.2793 -1.1019 -0.0065 10 7 1.8734 -2.4373 -0.0139 11 6 0.4155 -2.5452 0.1304 12 6 0.0011 -4.0150 0.0355 13 6 0.4219 -4.5768 -1.3240 14 6 0.6842 -4.8105 1.1498 15 6 -1.5173 -4.1275 0.1865 16 6 -1.9256 -5.5751 0.0924 17 1 -1.1769 -6.3386 -0.0594 18 6 -3.2548 -5.9249 0.2013 19 7 -4.1664 -4.9953 0.3867 20 14 -3.7608 -7.7193 0.0853 21 1 -3.0969 -8.4917 1.1661 22 1 -5.2344 -7.8287 0.2330 23 1 -3.3533 -8.2644 -1.2346 24 1 -0.3634 -0.1438 -1.0176 25 1 -0.3633 -0.8093 0.6333 26 1 -0.3633 0.9531 0.3842 27 1 1.9430 2.1231 0.0007 28 1 2.1898 -2.9068 -0.8492 29 1 0.1157 -2.1450 1.0989 30 1 -0.0712 -1.9786 -0.6634 31 1 1.5037 -4.4967 -1.4311 32 1 0.1271 -5.6240 -1.3914 33 1 -0.0647 -4.0101 -2.1177 34 1 0.3844 -4.4103 2.1183 35 1 0.3893 -5.8576 1.0818 36 1 1.7659 -4.7304 1.0426 37 1 -1.8167 -3.7274 1.1552 38 1 -2.0043 -3.5607 -0.6070 39 1 -5.1014 -5.2414 0.4636 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340933459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:06 Heat of formation + Delta-G solvation = 53.462584 kcal Electronic energy + Delta-G solvation = -22823.825697 eV Core-core repulsion = 19384.936455 eV Total energy + Delta-G solvation = -3438.889241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.98767 -42.65135 -39.63288 -37.52090 -36.38402 -35.17629 -34.21358 -30.75701 -29.50891 -28.91455 -27.99129 -26.69825 -26.51804 -24.61156 -22.84717 -22.23880 -20.23776 -19.55781 -19.47589 -18.74998 -18.32927 -17.98392 -17.21587 -16.66266 -16.46835 -16.00066 -15.71436 -15.28049 -14.97407 -14.46272 -14.23386 -14.00575 -13.86640 -13.27344 -12.90853 -12.76407 -12.65682 -12.61276 -12.41572 -12.29705 -12.20829 -12.17795 -12.01708 -11.77190 -11.51535 -11.43372 -10.96179 -10.85455 -10.79033 -10.48244 -9.39582 -8.14539 -6.19008 -0.80574 0.23474 0.58091 1.33606 1.42848 1.44050 1.50336 1.56536 2.36160 2.47421 3.21219 3.21705 3.52638 3.63157 3.82114 3.88157 4.19486 4.24899 4.28691 4.43457 4.53720 4.65473 4.67915 4.80113 4.98643 5.04690 5.15035 5.19379 5.46898 5.48738 5.50964 5.54558 5.56179 5.62283 5.79748 5.82999 5.91769 6.22898 6.35522 6.78925 6.94616 7.48252 8.96778 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027881 B = 0.004137 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.021650 B = 6766.353174 C = 7561.899394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.468 5.468 3 C 0.252 3.748 4 N -0.483 5.483 5 C -0.024 4.024 6 N 0.079 4.921 7 O -0.208 6.208 8 O -0.164 6.164 9 C 0.304 3.696 10 N -0.575 5.575 11 C 0.052 3.948 12 C -0.055 4.055 13 C -0.133 4.133 14 C -0.119 4.119 15 C 0.044 3.956 16 C -0.517 4.517 17 H 0.062 0.938 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.944 3.056 21 H -0.273 1.273 22 H -0.289 1.289 23 H -0.270 1.270 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.139 0.861 27 H 0.284 0.716 28 H 0.383 0.617 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.061 0.939 37 H -0.005 1.005 38 H 0.001 0.999 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.119 12.546 -2.406 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.159 5.159 3 C -0.034 4.034 4 N -0.203 5.203 5 C -0.235 4.235 6 N 0.588 4.412 7 O -0.411 6.411 8 O -0.376 6.376 9 C 0.078 3.922 10 N -0.211 5.211 11 C -0.074 4.074 12 C -0.055 4.055 13 C -0.190 4.190 14 C -0.177 4.177 15 C 0.007 3.993 16 C -0.555 4.555 17 H 0.080 0.920 18 C -0.192 4.192 19 N -0.572 5.572 20 Si 0.771 3.229 21 H -0.199 1.199 22 H -0.215 1.215 23 H -0.196 1.196 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.157 0.843 27 H 0.299 0.701 28 H 0.217 0.783 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.013 0.987 38 H 0.019 0.981 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.158 13.232 -1.779 14.703 hybrid contribution -1.087 -1.629 -0.552 2.035 sum 5.071 11.603 -2.330 12.875 Atomic orbital electron populations 1.23374 0.72009 1.08864 1.06236 1.46311 1.09851 1.04788 1.54904 1.26322 0.81404 0.95257 1.00424 1.69612 1.23298 1.07078 1.20267 1.19978 0.82666 0.90796 1.30025 1.42379 1.01258 1.00586 0.96961 1.94518 1.13738 1.76534 1.56330 1.94537 1.93636 0.95196 1.54261 1.19255 0.88839 0.86419 0.97639 1.57788 1.16064 1.04086 1.43189 1.23100 0.83016 0.98919 1.02400 1.20563 0.96576 0.92184 0.96191 1.21788 0.99664 1.01925 0.95640 1.21627 0.99428 0.99661 0.96934 1.18959 0.89675 0.95581 0.95088 1.21570 0.92099 0.94202 1.47617 0.92016 1.25712 0.97243 1.00632 0.95602 1.70031 1.01311 1.34229 1.51636 0.85813 0.76828 0.81422 0.78861 1.19882 1.21488 1.19562 0.88075 0.87931 0.84306 0.70064 0.78251 0.89131 0.90609 0.92165 0.92858 0.93085 0.94469 0.93756 0.92033 0.98670 0.98081 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.22 127.77 1.18 1.50 16 2 N -0.47 -7.44 3.19 -548.29 -1.75 -9.19 16 3 C 0.25 3.69 12.60 179.93 2.27 5.96 16 4 N -0.48 -12.57 11.22 -189.47 -2.13 -14.70 16 5 C -0.02 -0.73 8.04 128.27 1.03 0.30 16 6 N 0.08 2.77 4.46 -50.20 -0.22 2.55 16 7 O -0.21 -7.84 19.24 18.89 0.36 -7.47 16 8 O -0.16 -5.72 18.18 18.88 0.34 -5.38 16 9 C 0.30 7.33 7.30 130.57 0.95 8.29 16 10 N -0.58 -14.25 5.05 -343.13 -1.73 -15.99 16 11 C 0.05 1.27 2.87 86.30 0.25 1.52 16 12 C -0.05 -1.78 0.60 -52.18 -0.03 -1.81 16 13 C -0.13 -4.05 7.90 71.98 0.57 -3.48 16 14 C -0.12 -4.05 8.06 71.98 0.58 -3.47 16 15 C 0.04 1.93 4.04 29.85 0.12 2.05 16 16 C -0.52 -25.77 7.65 25.60 0.20 -25.58 16 17 H 0.06 3.01 5.68 -2.91 -0.02 2.99 16 18 C 0.01 0.30 5.46 84.65 0.46 0.76 16 19 N -0.93 -51.86 13.29 21.45 0.28 -51.57 16 20 Si 0.94 41.75 29.54 68.60 2.03 43.78 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 24 H 0.10 0.81 7.54 -2.39 -0.02 0.79 16 25 H 0.10 1.37 4.35 -2.39 -0.01 1.36 16 26 H 0.14 0.26 8.13 -2.39 -0.02 0.24 16 27 H 0.28 0.56 8.06 -2.91 -0.02 0.54 16 28 H 0.38 9.29 6.50 -89.69 -0.58 8.71 16 29 H 0.09 2.20 6.38 -2.39 -0.02 2.18 16 30 H 0.08 1.57 5.55 -2.39 -0.01 1.55 16 31 H 0.06 1.54 6.50 -2.39 -0.02 1.52 16 32 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.04 1.65 6.62 -2.39 -0.02 1.64 16 36 H 0.06 1.91 7.60 -2.39 -0.02 1.89 16 37 H -0.01 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -70.42 319.64 5.27 -65.15 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.51 Total: 6.79 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 7.57 Total: -13.97 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -5.55 Total: -88.90 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.71 Total: -12.85 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -70.42 5.27 -65.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340933459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.617 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds