Wall clock time and date at job start Tue Mar 31 2020 06:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47034 * 2 1 4 4 N 1.29028 * 124.91477 * 90.02629 * 3 2 1 5 5 C 1.31788 * 117.12381 * 179.97438 * 4 3 2 6 6 C 1.33643 * 114.49850 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.03520 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47066 * 90.00158 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46923 * 299.99733 * 10 9 8 12 12 C 1.52999 * 109.46998 * 59.99872 * 10 9 8 13 13 C 1.52996 * 109.46700 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.46820 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00070 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00019 * 179.97438 * 14 13 10 17 17 N 1.31515 * 120.00228 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00068 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46757 * 60.00769 * 18 16 14 20 20 H 1.48495 * 109.46824 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47105 * 300.00477 * 18 16 14 22 22 S 1.70980 * 124.91628 * 270.33629 * 3 2 1 23 23 H 1.09002 * 109.47432 * 300.00013 * 1 2 3 24 24 H 1.09001 * 109.47282 * 60.00069 * 1 2 3 25 25 H 1.09005 * 109.47379 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46743 * 239.99721 * 2 1 3 27 27 H 1.09007 * 109.46896 * 120.00079 * 2 1 3 28 28 H 1.07998 * 122.74857 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47558 * 330.00321 * 7 6 5 30 30 H 1.08998 * 109.47216 * 209.99983 * 7 6 5 31 31 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 32 32 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 33 33 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 34 34 H 1.09002 * 109.47301 * 60.00027 * 11 10 9 35 35 H 1.09001 * 109.47017 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.47249 * 300.00302 * 11 10 9 37 37 H 1.09001 * 109.46999 * 60.00126 * 12 10 9 38 38 H 1.09001 * 109.46478 * 179.97438 * 12 10 9 39 39 H 1.08993 * 109.47197 * 299.99817 * 12 10 9 40 40 H 1.08993 * 109.47740 * 299.99810 * 13 10 9 41 41 H 1.09005 * 109.47573 * 59.99976 * 13 10 9 42 42 H 0.97002 * 120.00555 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2789 2.1169 1.0580 5 6 2.7145 3.3478 0.8794 6 6 2.8430 3.7099 -0.4006 7 6 3.3170 5.0506 -0.8994 8 7 4.7769 5.0247 -1.0610 9 6 5.2758 6.3183 -1.5464 10 6 6.7964 6.2524 -1.7025 11 6 7.4348 5.9351 -0.3488 12 6 7.1589 5.1565 -2.7068 13 6 7.3159 7.5995 -2.2087 14 6 8.8137 7.5348 -2.3619 15 1 9.3422 6.6238 -2.1226 16 6 9.5093 8.6383 -2.8086 17 7 8.8658 9.7475 -3.1005 18 14 11.3659 8.5579 -2.9991 19 1 11.7178 7.4936 -3.9732 20 1 11.8701 9.8654 -3.4903 21 1 11.9856 8.2509 -1.6850 22 16 2.3507 2.3462 -1.4020 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.9485 4.0096 1.7001 29 1 3.0447 5.8229 -0.1800 30 1 2.8490 5.2672 -1.8596 31 1 5.0596 4.2747 -1.6739 32 1 4.8214 6.5442 -2.5111 33 1 5.0171 7.0991 -0.8312 34 1 7.0645 4.9753 0.0115 35 1 8.5181 5.8886 -0.4599 36 1 7.1764 6.7158 0.3667 37 1 6.7041 5.3827 -3.6712 38 1 8.2422 5.1100 -2.8183 39 1 6.7888 4.1968 -2.3466 40 1 6.8612 7.8252 -3.1732 41 1 7.0576 8.3806 -1.4936 42 1 9.3552 10.5239 -3.4144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342294084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:09 Heat of formation + Delta-G solvation = 16.885454 kcal Electronic energy + Delta-G solvation = -19514.596889 eV Core-core repulsion = 16620.414759 eV Total energy + Delta-G solvation = -2894.182130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.85666 -37.74223 -35.10196 -33.87393 -32.26136 -30.06100 -27.13477 -26.55040 -26.33379 -25.13059 -23.74767 -22.80306 -22.07114 -19.54610 -18.17873 -17.83782 -16.27925 -15.92374 -15.11806 -14.96277 -14.71667 -14.65077 -14.26741 -13.94285 -13.83249 -13.26733 -12.82462 -12.70518 -12.46427 -12.31564 -12.00307 -11.94946 -11.74273 -11.46088 -11.31957 -10.96994 -10.87647 -10.79300 -10.49820 -10.29193 -10.15832 -9.75578 -9.69209 -9.44375 -9.06737 -8.91337 -8.81782 -8.31742 -8.18834 -5.96425 -3.96620 0.56724 1.18649 1.61584 2.72857 3.34724 3.39343 3.41646 3.92543 4.42632 4.52938 4.65083 4.79160 4.86155 4.91485 5.07182 5.31912 5.39271 5.44688 5.52456 5.56738 5.65658 5.68877 5.79199 5.79647 5.95877 6.09500 6.20256 6.29715 6.47956 6.65032 6.76420 6.82028 7.14177 7.19122 7.24856 7.33145 7.55446 7.62213 7.69288 7.84155 8.03512 8.47785 9.08367 9.66127 11.15163 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.045689 B = 0.002801 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.689000 B = 9993.459021 C =10082.818496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C 0.044 3.956 4 N -0.472 5.472 5 C 0.050 3.950 6 C -0.207 4.207 7 C 0.134 3.866 8 N -0.681 5.681 9 C 0.069 3.931 10 C -0.057 4.057 11 C -0.116 4.116 12 C -0.130 4.130 13 C 0.034 3.966 14 C -0.507 4.507 15 H 0.058 0.942 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.277 1.277 22 S 0.110 5.890 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.176 0.824 29 H 0.093 0.907 30 H 0.039 0.961 31 H 0.340 0.660 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.032 0.968 40 H 0.013 0.987 41 H 0.015 0.985 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.437 -16.815 4.037 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.234 4.234 4 N -0.186 5.186 5 C -0.101 4.101 6 C -0.329 4.329 7 C 0.002 3.998 8 N -0.313 5.313 9 C -0.059 4.059 10 C -0.058 4.058 11 C -0.174 4.174 12 C -0.187 4.187 13 C -0.004 4.004 14 C -0.546 4.546 15 H 0.076 0.924 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 S 0.364 5.636 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.193 0.807 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.159 0.841 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.445 -16.912 4.081 23.940 hybrid contribution 1.017 0.753 -0.372 1.319 sum -15.427 -16.159 3.709 22.647 Atomic orbital electron populations 1.21769 0.93605 1.02465 1.02655 1.20202 0.96629 0.87745 1.04198 1.26998 1.03668 1.01741 0.91026 1.66275 1.14607 1.06185 1.31570 1.21695 1.00324 0.92034 0.96045 1.25950 1.09612 1.01142 0.96157 1.20285 0.89508 0.90275 0.99729 1.60652 1.08108 1.07007 1.55553 1.22163 0.96819 0.89519 0.97412 1.20627 0.90926 0.98606 0.95623 1.21603 1.00513 0.99478 0.95770 1.21778 1.02583 0.96360 0.97981 1.19122 0.95766 0.89657 0.95812 1.21191 0.92276 0.97777 1.43321 0.92353 1.25016 0.98093 0.95644 0.95837 1.69952 1.35528 1.02478 1.45800 0.86721 0.86159 0.77052 0.78444 1.20360 1.21444 1.20302 1.83981 1.60593 1.06268 1.12732 0.91974 0.92419 0.91444 0.89741 0.88851 0.80662 0.88915 0.94249 0.84105 0.95637 0.91246 0.93924 0.92651 0.94117 0.94070 0.91614 0.94898 0.96895 0.96629 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.05 -0.35 6.52 -27.89 -0.18 -0.53 16 3 C 0.04 0.46 6.64 -13.46 -0.09 0.37 16 4 N -0.47 -5.97 10.54 -11.86 -0.13 -6.09 16 5 C 0.05 0.61 11.25 -19.18 -0.22 0.40 16 6 C -0.21 -2.44 6.11 -35.92 -0.22 -2.66 16 7 C 0.13 1.61 6.22 -4.97 -0.03 1.58 16 8 N -0.68 -9.74 5.70 -115.05 -0.66 -10.39 16 9 C 0.07 1.16 4.65 -3.82 -0.02 1.14 16 10 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 11 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 12 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 13 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 14 C -0.51 -13.82 7.65 -34.44 -0.26 -14.09 16 15 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 S 0.11 1.13 23.18 -107.50 -2.49 -1.36 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.34 4.83 6.76 -39.29 -0.27 4.57 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 35 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 39 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 350.61 15.07 5.28 5.28 Total: -1.00 -29.98 350.61 -9.68 -39.66 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.04 Total: -0.19 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -0.36 Total: -17.44 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.04 Total: -42.53 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.49 Total: -1.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.98 -9.68 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342294084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.546 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds