Wall clock time and date at job start Tue Mar 31 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46893 * 110.99870 * 2 1 4 4 C 1.50697 * 109.47562 * 293.95659 * 3 2 1 5 5 C 1.38638 * 119.75049 * 269.73324 * 4 3 2 6 6 C 1.37622 * 120.24694 * 179.72310 * 5 4 3 7 7 C 1.40716 * 119.74251 * 0.56274 * 6 5 4 8 8 C 1.41395 * 120.23983 * 179.68255 * 7 6 5 9 9 H 1.08001 * 119.99772 * 155.31247 * 8 7 6 10 10 C 1.39948 * 120.00503 * 335.31517 * 8 7 6 11 11 N 1.30819 * 119.99364 * 342.23235 * 10 8 7 12 12 Si 1.86800 * 120.00020 * 162.22820 * 10 8 7 13 13 H 1.48499 * 109.46825 * 94.66806 * 12 10 8 14 14 H 1.48493 * 109.46915 * 214.66339 * 12 10 8 15 15 H 1.48491 * 109.47423 * 334.66911 * 12 10 8 16 16 C 1.40715 * 119.51305 * 359.71108 * 7 6 5 17 17 C 1.37615 * 119.74623 * 359.97438 * 16 7 6 18 18 C 1.46897 * 110.99874 * 123.96087 * 2 1 3 19 19 C 1.50695 * 109.47393 * 66.04423 * 18 2 1 20 20 C 1.38680 * 120.42172 * 90.00087 * 19 18 2 21 21 C 1.38624 * 118.41943 * 179.97438 * 20 19 18 22 22 C 1.38225 * 119.16456 * 0.25068 * 21 20 19 23 23 N 1.31849 * 120.76241 * 359.49443 * 22 21 20 24 24 C 1.31896 * 121.72755 * 0.49801 * 23 22 21 25 25 H 1.09003 * 109.46253 * 296.04098 * 1 2 3 26 26 H 1.08998 * 109.47252 * 56.04294 * 1 2 3 27 27 H 1.08998 * 109.47422 * 176.04745 * 1 2 3 28 28 H 1.09001 * 109.47101 * 53.95895 * 3 2 1 29 29 H 1.09002 * 109.46791 * 173.95514 * 3 2 1 30 30 H 1.07999 * 119.87510 * 359.96898 * 5 4 3 31 31 H 1.07992 * 120.12557 * 180.27600 * 6 5 4 32 32 H 0.97001 * 119.99794 * 179.97438 * 11 10 8 33 33 H 1.08004 * 120.12494 * 179.97438 * 16 7 6 34 34 H 1.08003 * 119.87684 * 179.97438 * 17 16 7 35 35 H 1.08994 * 109.47021 * 306.03799 * 18 2 1 36 36 H 1.09003 * 109.46698 * 186.04501 * 18 2 1 37 37 H 1.08000 * 120.78399 * 359.94732 * 20 19 18 38 38 H 1.08006 * 120.41361 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.61713 * 179.75185 * 22 21 20 40 40 H 1.08000 * 119.61964 * 179.74620 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 2.5027 1.9662 -2.3781 6 6 2.1829 2.5746 -3.5703 7 6 0.9773 3.2909 -3.6872 8 6 0.6414 3.9258 -4.9051 9 1 -0.3934 4.1218 -5.1444 10 6 1.6496 4.3002 -5.8005 11 7 2.8884 4.3909 -5.3899 12 14 1.2266 4.6703 -7.5819 13 1 1.0173 6.1311 -7.7477 14 1 2.3411 4.2274 -8.4576 15 1 -0.0149 3.9468 -7.9565 16 6 0.1089 3.3712 -2.5829 17 6 0.4461 2.7495 -1.4024 18 6 1.9955 -0.7661 1.1375 19 6 1.6369 -2.2205 0.9726 20 6 2.4901 -3.0822 0.2998 21 6 2.1195 -4.4119 0.1729 22 6 0.9179 -4.8307 0.7127 23 7 0.1336 -3.9842 1.3504 24 6 0.4541 -2.7125 1.4906 25 1 -0.3632 0.4512 0.9234 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 1.5611 1.9272 0.8310 29 1 3.0797 1.3443 0.1082 30 1 3.4298 1.4202 -2.2845 31 1 2.8567 2.5066 -4.4115 32 1 3.5873 4.6500 -6.0105 33 1 -0.8187 3.9188 -2.6615 34 1 -0.2186 2.8101 -0.5534 35 1 1.5612 -0.3874 2.0627 36 1 3.0798 -0.6612 1.1755 37 1 3.4210 -2.7255 -0.1158 38 1 2.7594 -5.1108 -0.3452 39 1 0.6200 -5.8641 0.6146 40 1 -0.2158 -2.0479 2.0160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343420230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:27 Heat of formation + Delta-G solvation = 54.981345 kcal Electronic energy + Delta-G solvation = -20765.453442 eV Core-core repulsion = 17737.479322 eV Total energy + Delta-G solvation = -3027.974120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28357 -38.14688 -36.58412 -33.81597 -32.67468 -31.74146 -30.11761 -29.25765 -27.33201 -26.97309 -24.56634 -23.54904 -22.53120 -21.04677 -20.93860 -19.70616 -17.29537 -17.12833 -16.44333 -15.63254 -15.47000 -15.24067 -14.75075 -14.40059 -13.93966 -13.70559 -13.43512 -13.27497 -13.09151 -12.88424 -12.48803 -11.96109 -11.87968 -11.71770 -11.56181 -11.36795 -11.17186 -11.04678 -10.95418 -10.49159 -10.35695 -9.84009 -9.61486 -9.48880 -9.37316 -9.15260 -9.05482 -8.00694 -7.43183 -7.28400 -6.76297 -4.34404 1.02697 1.24737 2.74029 3.06473 3.08310 3.10619 3.17843 3.71769 3.93147 4.33808 4.40231 4.70037 4.73498 4.78194 4.95513 4.99678 5.29718 5.44980 5.53511 5.64268 5.66961 5.71747 5.76632 5.88340 6.01688 6.06178 6.20645 6.26844 6.35694 6.37761 6.43686 6.62765 6.96052 7.07146 7.27347 7.31429 7.37630 7.41657 7.62385 7.88021 7.89321 8.06267 8.14754 8.30833 8.65271 8.90182 8.98590 10.18337 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.003250 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.760005 B = 8612.749761 C = 8909.920417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.530 5.530 3 C 0.121 3.879 4 C -0.208 4.208 5 C -0.079 4.079 6 C -0.167 4.167 7 C 0.113 3.887 8 C -0.463 4.463 9 H 0.076 0.924 10 C 0.076 3.924 11 N -0.793 5.793 12 Si 0.906 3.094 13 H -0.271 1.271 14 H -0.275 1.275 15 H -0.261 1.261 16 C -0.228 4.228 17 C -0.083 4.083 18 C 0.093 3.907 19 C -0.119 4.119 20 C -0.056 4.056 21 C -0.174 4.174 22 C 0.089 3.911 23 N -0.488 5.488 24 C 0.102 3.898 25 H 0.018 0.982 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.025 0.975 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.280 0.720 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.152 0.848 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -11.457 9.666 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.253 5.253 3 C -0.005 4.005 4 C -0.210 4.210 5 C -0.098 4.098 6 C -0.187 4.187 7 C 0.111 3.889 8 C -0.493 4.493 9 H 0.095 0.905 10 C -0.141 4.141 11 N -0.418 5.418 12 Si 0.730 3.270 13 H -0.196 1.196 14 H -0.200 1.200 15 H -0.184 1.184 16 C -0.247 4.247 17 C -0.102 4.102 18 C -0.035 4.035 19 C -0.122 4.122 20 C -0.082 4.082 21 C -0.194 4.194 22 C -0.068 4.068 23 N -0.196 5.196 24 C -0.055 4.055 25 H 0.036 0.964 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.339 -11.906 9.520 15.247 hybrid contribution 0.436 0.934 -0.534 1.161 sum 0.775 -10.971 8.985 14.202 Atomic orbital electron populations 1.22468 0.87610 1.01465 1.01050 1.62148 1.08111 1.14797 1.40282 1.20762 0.98437 0.85838 0.95497 1.18804 0.98284 1.08535 0.95364 1.20473 0.97235 0.98589 0.93467 1.21294 0.99669 1.00726 0.96984 1.17615 0.91039 0.88671 0.91616 1.19596 0.94245 1.34090 1.01368 0.90538 1.25902 0.94474 0.93069 1.00676 1.69829 1.01501 1.34059 1.36421 0.86339 0.79523 0.79258 0.81852 1.19615 1.20035 1.18433 1.20936 1.02032 1.07943 0.93814 1.20347 0.95380 0.98144 0.96348 1.21003 1.00642 0.89000 0.92896 1.20839 0.95854 0.96751 0.98711 1.21506 0.99468 0.92738 0.94530 1.22144 0.98611 0.96816 1.01795 1.22707 0.90867 0.99344 0.93876 1.67669 1.33153 1.03716 1.15087 1.22652 0.94263 0.91818 0.96807 0.96353 0.89821 0.92359 0.95726 0.91610 0.89578 0.86604 0.90925 0.89193 0.89914 0.94101 0.89953 0.84709 0.84921 0.83070 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.80 60.07 0.53 0.87 16 2 N -0.53 -8.22 4.74 -245.83 -1.17 -9.39 16 3 C 0.12 2.04 5.11 -4.98 -0.03 2.02 16 4 C -0.21 -4.40 4.91 -104.33 -0.51 -4.91 16 5 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 6 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 7 C 0.11 3.01 5.57 -106.82 -0.60 2.41 16 8 C -0.46 -12.33 9.05 -37.74 -0.34 -12.67 16 9 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 10 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 11 N -0.79 -20.46 10.97 55.55 0.61 -19.85 16 12 Si 0.91 18.65 29.60 -169.99 -5.03 13.62 16 13 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 14 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 15 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 16 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 17 C -0.08 -1.82 7.86 -39.66 -0.31 -2.13 16 18 C 0.09 1.14 5.14 -4.98 -0.03 1.12 16 19 C -0.12 -1.45 4.89 -104.48 -0.51 -1.96 16 20 C -0.06 -0.63 9.86 -39.28 -0.39 -1.02 16 21 C -0.17 -1.75 10.11 -39.44 -0.40 -2.15 16 22 C 0.09 0.96 11.18 -17.55 -0.20 0.77 16 23 N -0.49 -6.30 10.36 -13.25 -0.14 -6.44 16 24 C 0.10 1.26 9.15 -17.54 -0.16 1.10 16 25 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.08 1.48 5.88 -51.93 -0.31 1.17 16 27 H 0.06 0.85 6.18 -51.93 -0.32 0.53 16 28 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 29 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 30 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.12 3.11 6.18 -52.49 -0.32 2.79 16 32 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 33 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 34 H 0.08 1.60 7.97 -52.48 -0.42 1.19 16 35 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16 36 H 0.08 0.93 7.89 -51.93 -0.41 0.52 16 37 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.15 1.63 8.04 -52.49 -0.42 1.20 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -28.36 332.69 -10.37 -38.74 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.53 Total: 5.84 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -4.13 Total: -27.53 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.69 Total: -35.68 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.36 -10.37 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343420230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.719 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds