Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46815 * 2 1 4 4 N 1.46897 * 109.47251 * 240.00299 * 2 1 3 5 5 C 1.46899 * 111.00292 * 84.99875 * 4 2 1 6 6 C 1.50699 * 109.47154 * 180.02562 * 5 4 2 7 7 C 1.38636 * 119.74520 * 269.72581 * 6 5 4 8 8 C 1.37616 * 120.25005 * 179.72389 * 7 6 5 9 9 C 1.40719 * 119.74328 * 0.56962 * 8 7 6 10 10 C 1.41390 * 120.24397 * 179.68357 * 9 8 7 11 11 H 1.08008 * 119.99734 * 155.31392 * 10 9 8 12 12 C 1.39943 * 120.00468 * 335.30632 * 10 9 8 13 13 N 1.30828 * 119.99871 * 342.24168 * 12 10 9 14 14 Si 1.86799 * 120.00400 * 162.23041 * 12 10 9 15 15 H 1.48503 * 109.46828 * 94.66862 * 14 12 10 16 16 H 1.48498 * 109.47276 * 214.66752 * 14 12 10 17 17 H 1.48507 * 109.46968 * 334.67213 * 14 12 10 18 18 C 1.40718 * 119.50983 * 359.70503 * 9 8 7 19 19 C 1.37619 * 119.74527 * 359.97438 * 18 9 8 20 20 C 1.50706 * 109.47114 * 119.99853 * 2 1 3 21 21 C 1.38666 * 120.41882 * 260.00163 * 20 2 1 22 22 C 1.38626 * 118.41913 * 179.97438 * 21 20 2 23 23 C 1.38227 * 119.16365 * 359.97438 * 22 21 20 24 24 N 1.31855 * 120.76206 * 0.02562 * 23 22 21 25 25 C 1.31886 * 121.72804 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47042 * 299.99573 * 1 2 3 27 27 H 1.08994 * 109.47555 * 60.00225 * 1 2 3 28 28 H 1.09006 * 109.46815 * 180.02562 * 1 2 3 29 29 H 1.00902 * 110.99894 * 208.95202 * 4 2 1 30 30 H 1.09003 * 109.46704 * 300.00034 * 5 4 2 31 31 H 1.08999 * 109.47430 * 59.99747 * 5 4 2 32 32 H 1.08012 * 119.87857 * 359.97438 * 7 6 5 33 33 H 1.08005 * 120.13274 * 180.27488 * 8 7 6 34 34 H 0.96992 * 120.00346 * 179.97438 * 13 12 10 35 35 H 1.07996 * 120.12776 * 179.97438 * 18 9 8 36 36 H 1.07996 * 119.87489 * 179.97438 * 19 18 9 37 37 H 1.08002 * 120.78974 * 359.70247 * 21 20 2 38 38 H 1.08002 * 120.41895 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.61861 * 180.02562 * 23 22 21 40 40 H 1.07994 * 119.62183 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2227 -2.3469 6 6 2.5874 -0.5217 -3.5560 7 6 3.9481 -0.5664 -3.8176 8 6 4.4210 -1.2479 -4.9156 9 6 3.5166 -1.8909 -5.7810 10 6 3.9904 -2.5885 -6.9159 11 1 3.4016 -3.3864 -7.3440 12 6 5.2220 -2.2450 -7.4847 13 7 5.7699 -1.0892 -7.2098 14 14 6.0839 -3.4368 -8.6363 15 1 5.7360 -3.1062 -10.0416 16 1 7.5533 -3.3285 -8.4515 17 1 5.6473 -4.8231 -8.3312 18 6 2.1372 -1.8341 -5.5087 19 6 1.6874 -1.1523 -4.4011 20 6 2.0323 -0.7104 1.2305 21 6 2.4621 0.0131 2.3326 22 6 2.9155 -0.6826 3.4427 23 6 2.9236 -2.0646 3.4144 24 7 2.5073 -2.7198 2.3486 25 6 2.0704 -2.0911 1.2747 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 2.9174 -1.1204 -1.0287 30 1 1.0870 0.6163 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 4.6401 -0.0677 -3.1549 33 1 5.4818 -1.2852 -5.1152 34 1 6.6237 -0.8512 -7.6037 35 1 1.4342 -2.3236 -6.1664 36 1 0.6291 -1.1070 -4.1904 37 1 2.4481 1.0930 2.3247 38 1 3.2581 -0.1516 4.3185 39 1 3.2749 -2.6140 4.2753 40 1 1.7370 -2.6618 0.4206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343675979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = 44.489189 kcal Electronic energy + Delta-G solvation = -20555.591172 eV Core-core repulsion = 17527.162078 eV Total energy + Delta-G solvation = -3028.429094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.36244 -37.87483 -36.51141 -33.91570 -32.62545 -31.78660 -29.97673 -29.24883 -28.83768 -26.23122 -24.19841 -23.74563 -22.75143 -20.97860 -20.60602 -19.84685 -17.29384 -17.26677 -16.47895 -16.08303 -15.25572 -14.72062 -14.46102 -14.37744 -14.02230 -13.82589 -13.48754 -13.25691 -13.17904 -12.65212 -12.49239 -12.22521 -11.97971 -11.90069 -11.56911 -11.45577 -11.19242 -10.96102 -10.87675 -10.54288 -10.36552 -9.91858 -9.57225 -9.48984 -9.38455 -9.12407 -9.05417 -8.16219 -7.44012 -7.28850 -6.76252 -4.34272 1.00422 1.16422 2.74158 3.06983 3.09654 3.11505 3.18959 3.71995 3.93491 4.29662 4.37724 4.65841 4.69616 4.75220 4.90166 5.00065 5.26119 5.34972 5.44220 5.66900 5.72596 5.74403 5.82984 5.88481 5.93638 5.98452 6.12854 6.27396 6.30408 6.40348 6.42689 6.61611 6.95624 7.08194 7.27780 7.32764 7.39049 7.61916 7.66737 7.89698 7.91706 8.06726 8.14728 8.31613 8.65007 8.90620 8.98922 10.18411 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025394 B = 0.003187 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.356500 B = 8783.502368 C = 9261.865673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.125 3.875 3 H 0.049 0.951 4 N -0.677 5.677 5 C 0.126 3.874 6 C -0.215 4.215 7 C -0.095 4.095 8 C -0.166 4.166 9 C 0.113 3.887 10 C -0.463 4.463 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.794 5.794 14 Si 0.906 3.094 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.260 1.260 18 C -0.229 4.229 19 C -0.067 4.067 20 C -0.136 4.136 21 C -0.073 4.073 22 C -0.177 4.177 23 C 0.090 3.910 24 N -0.485 5.485 25 C 0.119 3.881 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.342 0.658 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.280 0.720 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 3.347 15.753 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.014 3.986 3 H 0.066 0.934 4 N -0.309 5.309 5 C -0.002 4.002 6 C -0.217 4.217 7 C -0.114 4.114 8 C -0.185 4.185 9 C 0.111 3.889 10 C -0.492 4.492 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.184 1.184 18 C -0.248 4.248 19 C -0.086 4.086 20 C -0.139 4.139 21 C -0.100 4.100 22 C -0.196 4.196 23 C -0.067 4.067 24 N -0.193 5.193 25 C -0.038 4.038 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.161 0.839 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.170 0.830 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.725 2.344 15.526 16.397 hybrid contribution 1.309 1.131 -0.310 1.757 sum -3.416 3.474 15.216 15.977 Atomic orbital electron populations 1.21775 0.93624 1.02651 1.01114 1.20407 0.96098 0.95097 0.86973 0.93355 1.60816 1.33819 1.33379 1.02935 1.20601 0.99025 0.91951 0.88612 1.18853 0.93432 1.10324 0.99067 1.20516 0.93732 0.99682 0.97440 1.21263 0.99744 1.02841 0.94673 1.17623 0.90657 0.89290 0.91357 1.19605 1.02616 1.16381 1.10616 0.90468 1.25911 0.96910 0.94743 0.96579 1.69830 1.16422 1.18543 1.37117 0.86337 0.78710 0.81753 0.80153 1.19600 1.20063 1.18389 1.20979 0.95251 1.08150 1.00438 1.20319 0.96650 0.97067 0.94550 1.21083 1.00373 0.95722 0.96680 1.21494 0.95497 1.00413 0.92596 1.22089 1.02166 0.95941 0.99443 1.22784 0.95750 0.91752 0.96366 1.67776 1.09956 1.41258 1.00332 1.22845 0.93652 0.91538 0.95746 0.93063 0.92030 0.91776 0.83884 0.91840 0.96221 0.90029 0.86637 0.90942 0.89111 0.89455 0.85118 0.85011 0.83037 0.81716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.40 37.16 0.35 -1.15 16 2 C 0.12 1.51 2.84 -68.86 -0.20 1.32 16 3 H 0.05 0.57 7.69 -51.93 -0.40 0.17 16 4 N -0.68 -10.11 5.70 -109.22 -0.62 -10.73 16 5 C 0.13 2.11 5.60 -4.98 -0.03 2.09 16 6 C -0.22 -4.55 5.42 -104.33 -0.56 -5.11 16 7 C -0.09 -2.17 9.67 -39.66 -0.38 -2.55 16 8 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 9 C 0.11 3.02 5.57 -106.82 -0.60 2.43 16 10 C -0.46 -12.34 9.05 -37.74 -0.34 -12.68 16 11 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 12 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 13 N -0.79 -20.55 10.97 55.55 0.61 -19.94 16 14 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 18 C -0.23 -5.62 9.80 -38.87 -0.38 -6.01 16 19 C -0.07 -1.49 9.67 -39.66 -0.38 -1.87 16 20 C -0.14 -1.61 4.72 -104.48 -0.49 -2.10 16 21 C -0.07 -0.74 9.82 -39.28 -0.39 -1.12 16 22 C -0.18 -1.63 10.11 -39.44 -0.40 -2.02 16 23 C 0.09 0.96 11.18 -17.55 -0.20 0.76 16 24 N -0.49 -6.45 10.36 -13.25 -0.14 -6.59 16 25 C 0.12 1.56 10.19 -17.55 -0.18 1.38 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.34 5.37 7.99 -39.29 -0.31 5.05 16 30 H 0.06 1.02 7.37 -51.93 -0.38 0.64 16 31 H 0.02 0.32 7.99 -51.93 -0.42 -0.09 16 32 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.12 3.10 6.18 -52.48 -0.32 2.78 16 34 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 35 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.17 2.20 7.73 -52.49 -0.41 1.80 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -27.93 338.05 -10.25 -38.18 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.56 Total: 9.77 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -4.60 Total: -29.45 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.15 Total: -37.26 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.93 -10.25 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343675979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.669 kcal (2) G-P(sol) polarization free energy of solvation -27.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds