Wall clock time and date at job start Tue Mar 31 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46963 * 2 1 4 4 N 1.46900 * 109.47344 * 119.99727 * 2 1 3 5 5 C 1.46892 * 111.00304 * 275.00647 * 4 2 1 6 6 C 1.50703 * 109.47241 * 179.97438 * 5 4 2 7 7 C 1.38634 * 119.74708 * 269.72604 * 6 5 4 8 8 C 1.37622 * 120.24649 * 179.72126 * 7 6 5 9 9 C 1.40715 * 119.74469 * 0.57202 * 8 7 6 10 10 C 1.41392 * 120.24584 * 179.68170 * 9 8 7 11 11 H 1.07999 * 119.99926 * 24.40426 * 10 9 8 12 12 C 1.39942 * 120.00060 * 204.40390 * 10 9 8 13 13 N 1.30828 * 120.00208 * 17.86370 * 12 10 9 14 14 Si 1.86807 * 119.99864 * 197.86993 * 12 10 9 15 15 H 1.48489 * 109.47149 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47205 * 120.00178 * 14 12 10 17 17 H 1.48501 * 109.46529 * 239.99851 * 14 12 10 18 18 C 1.40718 * 119.51111 * 359.70149 * 9 8 7 19 19 C 1.37617 * 119.74303 * 0.02562 * 18 9 8 20 20 C 1.50703 * 109.47468 * 240.00385 * 2 1 3 21 21 C 1.38220 * 119.61932 * 84.99583 * 20 2 1 22 22 C 1.38630 * 119.15833 * 180.02562 * 21 20 2 23 23 C 1.38672 * 118.42113 * 0.02562 * 22 21 20 24 24 C 1.38175 * 119.16477 * 0.26968 * 23 22 21 25 25 N 1.31853 * 119.61225 * 265.02132 * 20 2 1 26 26 H 1.09000 * 109.46831 * 60.00257 * 1 2 3 27 27 H 1.09003 * 109.46329 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47029 * 299.99925 * 1 2 3 29 29 H 1.00903 * 111.00223 * 151.04698 * 4 2 1 30 30 H 1.08998 * 109.47351 * 299.99804 * 5 4 2 31 31 H 1.08996 * 109.47544 * 59.99729 * 5 4 2 32 32 H 1.08000 * 119.87992 * 359.97438 * 7 6 5 33 33 H 1.07999 * 120.12856 * 180.27260 * 8 7 6 34 34 H 0.97000 * 120.00159 * 180.02562 * 13 12 10 35 35 H 1.08003 * 120.13183 * 179.97438 * 18 9 8 36 36 H 1.08007 * 119.87713 * 180.02562 * 19 18 9 37 37 H 1.08001 * 120.42013 * 0.05011 * 21 20 2 38 38 H 1.08000 * 120.78945 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.41755 * 180.02562 * 23 22 21 40 40 H 1.07994 * 119.62103 * 179.70811 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5873 -0.5218 3.5560 7 6 1.6868 -1.1472 4.4044 8 6 2.1370 -1.8346 5.5084 9 6 3.5163 -1.8911 5.7811 10 6 3.9899 -2.5887 6.9160 11 1 3.3991 -3.3836 7.3467 12 6 5.2243 -2.2492 7.4812 13 7 5.7752 -1.0953 7.2047 14 14 6.0855 -3.4438 8.6305 15 1 5.2601 -4.6691 8.7799 16 1 7.4110 -3.8049 8.0666 17 1 6.2697 -2.8066 9.9592 18 6 4.4207 -1.2477 4.9161 19 6 3.9484 -0.5709 3.8149 20 6 2.0324 -0.7103 -1.2305 21 6 2.1614 -0.0131 -2.4170 22 6 2.6239 -0.6761 -3.5432 23 6 2.9404 -2.0217 -3.4334 24 6 2.7800 -2.6540 -2.2154 25 7 2.3434 -1.9899 -1.1628 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 2.9174 -1.1204 1.0288 30 1 2.7587 1.0462 2.1183 31 1 1.0871 0.6162 2.5525 32 1 0.6282 -1.0982 4.1960 33 1 1.4340 -2.3248 6.1656 34 1 6.6310 -0.8601 7.5962 35 1 5.4815 -1.2843 5.1160 36 1 4.6407 -0.0766 3.1493 37 1 1.9054 1.0350 -2.4660 38 1 2.7344 -0.1571 -4.4838 39 1 3.3039 -2.5696 -4.2902 40 1 3.0197 -3.7030 -2.1228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343771087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:19 Heat of formation + Delta-G solvation = 49.460181 kcal Electronic energy + Delta-G solvation = -20558.143805 eV Core-core repulsion = 17529.930269 eV Total energy + Delta-G solvation = -3028.213536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36523 -37.76365 -36.24367 -33.79707 -32.49907 -32.02395 -30.05864 -29.18962 -28.76680 -26.16686 -24.23623 -23.65275 -22.70019 -20.91117 -20.57655 -19.77643 -17.23061 -17.11967 -16.41757 -15.89418 -15.27182 -14.89404 -14.59031 -14.24877 -14.03111 -13.77196 -13.45662 -13.25713 -13.00483 -12.53180 -12.33756 -12.11427 -11.90108 -11.82560 -11.63077 -11.42720 -11.10051 -10.91052 -10.77491 -10.46084 -10.31384 -9.98734 -9.52985 -9.37577 -9.32748 -9.08855 -9.06380 -7.93594 -7.36935 -7.21989 -6.71139 -4.28627 0.98190 1.18188 2.78669 3.10204 3.16000 3.16375 3.22610 3.71040 3.97374 4.17060 4.37366 4.65839 4.71458 4.82819 4.95572 5.09171 5.23815 5.42688 5.49059 5.58476 5.74628 5.80437 5.89174 5.92534 5.98884 6.04425 6.05462 6.32768 6.37656 6.47854 6.49955 6.58619 7.01499 7.13448 7.35298 7.45116 7.48297 7.69063 7.87694 7.95911 8.04254 8.12699 8.22521 8.37561 8.70983 8.96295 9.05107 10.23510 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026107 B = 0.003194 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.269603 B = 8763.180379 C = 9281.930929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.130 3.870 3 H 0.053 0.947 4 N -0.665 5.665 5 C 0.122 3.878 6 C -0.210 4.210 7 C -0.067 4.067 8 C -0.228 4.228 9 C 0.112 3.888 10 C -0.463 4.463 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.795 5.795 14 Si 0.906 3.094 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.275 1.275 18 C -0.166 4.166 19 C -0.095 4.095 20 C 0.132 3.868 21 C -0.172 4.172 22 C -0.077 4.077 23 C -0.183 4.183 24 C 0.102 3.898 25 N -0.458 5.458 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.349 0.651 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.279 0.721 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 2.359 -17.675 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.019 3.981 3 H 0.071 0.929 4 N -0.298 5.298 5 C -0.005 4.005 6 C -0.211 4.211 7 C -0.086 4.086 8 C -0.248 4.248 9 C 0.110 3.890 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.420 5.420 14 Si 0.730 3.270 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.201 1.201 18 C -0.185 4.185 19 C -0.114 4.114 20 C -0.007 4.007 21 C -0.192 4.192 22 C -0.103 4.103 23 C -0.203 4.203 24 C -0.056 4.056 25 N -0.166 5.166 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.169 0.831 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.618 1.829 -16.641 17.366 hybrid contribution 1.410 0.519 -0.603 1.620 sum -3.208 2.348 -17.244 17.696 Atomic orbital electron populations 1.21749 0.93413 1.02779 1.01103 1.20452 0.96258 0.94435 0.86905 0.92889 1.60588 1.34739 1.32323 1.02164 1.20648 0.98808 0.92028 0.89051 1.18863 0.93389 1.10058 0.98831 1.20320 0.96668 0.97067 0.94559 1.20971 0.95249 1.08004 1.00529 1.17621 0.90654 0.89376 0.91391 1.19622 1.02412 1.16582 1.10644 0.90482 1.25905 0.96956 0.94729 0.96552 1.69845 1.16216 1.18651 1.37334 0.86303 0.79606 0.81428 0.79621 1.18400 1.19760 1.20078 1.21261 0.99740 1.02868 0.94636 1.20511 0.93739 0.99788 0.97372 1.21467 0.94094 0.90386 0.94724 1.21928 1.02190 1.01444 0.93664 1.21525 0.95707 0.94565 0.98503 1.22146 1.02748 0.95761 0.99625 1.22877 0.94299 1.00260 0.88122 1.67559 1.09562 1.08201 1.31303 0.93110 0.91673 0.91817 0.83143 0.96519 0.91997 0.89468 0.89146 0.91058 0.86616 0.90072 0.85004 0.85056 0.85028 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.40 37.16 0.35 -1.28 16 2 C 0.13 1.78 2.86 -68.86 -0.20 1.58 16 3 H 0.05 0.67 7.77 -51.93 -0.40 0.27 16 4 N -0.67 -11.32 6.04 -109.22 -0.66 -11.98 16 5 C 0.12 2.22 5.60 -4.98 -0.03 2.19 16 6 C -0.21 -4.67 5.42 -104.33 -0.56 -5.24 16 7 C -0.07 -1.56 9.67 -39.66 -0.38 -1.95 16 8 C -0.23 -5.79 9.80 -38.87 -0.38 -6.17 16 9 C 0.11 3.07 5.58 -106.83 -0.60 2.47 16 10 C -0.46 -12.59 9.05 -37.74 -0.34 -12.93 16 11 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 12 C 0.08 1.94 5.14 -17.34 -0.09 1.86 16 13 N -0.79 -20.93 10.95 55.55 0.61 -20.32 16 14 Si 0.91 19.02 29.60 -169.99 -5.03 13.99 16 15 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 19 C -0.10 -2.27 9.67 -39.66 -0.38 -2.65 16 20 C 0.13 1.74 5.70 -82.59 -0.47 1.26 16 21 C -0.17 -1.79 9.77 -39.44 -0.39 -2.18 16 22 C -0.08 -0.69 10.18 -39.28 -0.40 -1.09 16 23 C -0.18 -1.67 10.11 -39.44 -0.40 -2.07 16 24 C 0.10 1.16 11.18 -17.55 -0.20 0.96 16 25 N -0.46 -6.60 9.29 -9.48 -0.09 -6.69 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.78 7.45 -51.93 -0.39 0.39 16 29 H 0.35 6.38 7.84 -39.29 -0.31 6.07 16 30 H 0.02 0.29 7.99 -51.93 -0.42 -0.12 16 31 H 0.06 1.06 7.37 -51.93 -0.38 0.68 16 32 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 35 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 36 H 0.08 1.77 8.06 -52.48 -0.42 1.34 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -29.35 338.48 -10.45 -39.80 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.57 Total: 10.07 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -4.80 Total: -29.98 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.14 Total: -38.98 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.35 -10.45 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343771087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.261 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds