Wall clock time and date at job start Tue Mar 31 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09005 * 109.47050 * 2 1 4 4 N 1.46902 * 109.46720 * 240.00096 * 2 1 3 5 5 C 1.46894 * 110.99957 * 85.00575 * 4 2 1 6 6 C 1.50702 * 109.47093 * 179.97438 * 5 4 2 7 7 C 1.38631 * 119.75000 * 269.72699 * 6 5 4 8 8 C 1.37621 * 120.25141 * 179.72136 * 7 6 5 9 9 C 1.40709 * 119.74045 * 0.56516 * 8 7 6 10 10 C 1.41401 * 120.24540 * 179.68483 * 9 8 7 11 11 H 1.07996 * 119.99747 * 24.40580 * 10 9 8 12 12 C 1.39944 * 120.00068 * 204.41701 * 10 9 8 13 13 N 1.30825 * 120.00325 * 17.84922 * 12 10 9 14 14 Si 1.86801 * 119.99724 * 197.85169 * 12 10 9 15 15 H 1.48509 * 109.46932 * 59.99853 * 14 12 10 16 16 H 1.48500 * 109.47395 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47340 * 299.99869 * 14 12 10 18 18 C 1.40713 * 119.51321 * 359.70744 * 9 8 7 19 19 C 1.37615 * 119.74506 * 359.97438 * 18 9 8 20 20 C 1.50694 * 109.47050 * 119.99968 * 2 1 3 21 21 C 1.38231 * 119.61836 * 275.00095 * 20 2 1 22 22 C 1.38627 * 119.15779 * 180.02562 * 21 20 2 23 23 C 1.38669 * 118.42591 * 359.97438 * 22 21 20 24 24 C 1.38186 * 119.16138 * 0.27814 * 23 22 21 25 25 N 1.31858 * 119.61922 * 95.02141 * 20 2 1 26 26 H 1.09001 * 109.46578 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46869 * 300.00527 * 1 2 3 28 28 H 1.09002 * 109.47045 * 60.00002 * 1 2 3 29 29 H 1.00903 * 110.99088 * 208.95018 * 4 2 1 30 30 H 1.09006 * 109.46993 * 299.98912 * 5 4 2 31 31 H 1.09000 * 109.48050 * 59.99646 * 5 4 2 32 32 H 1.08007 * 119.87355 * 359.97116 * 7 6 5 33 33 H 1.08003 * 120.12643 * 180.27700 * 8 7 6 34 34 H 0.96996 * 119.99641 * 180.02562 * 13 12 10 35 35 H 1.08007 * 120.12766 * 179.97438 * 18 9 8 36 36 H 1.08002 * 119.87468 * 180.02562 * 19 18 9 37 37 H 1.07999 * 120.41902 * 359.97438 * 21 20 2 38 38 H 1.08000 * 120.78688 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.42351 * 179.97438 * 23 22 21 40 40 H 1.07993 * 119.61782 * 179.70019 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3468 6 6 2.5885 -0.5215 -3.5557 7 6 3.9493 -0.5654 -3.8167 8 6 4.4231 -1.2468 -4.9145 9 6 3.5195 -1.8903 -5.7802 10 6 3.9941 -2.5878 -6.9149 11 1 5.0036 -2.9711 -6.9299 12 6 3.1558 -2.7811 -8.0187 13 7 2.0844 -2.0443 -8.1634 14 14 3.5664 -4.0913 -9.2852 15 1 3.6050 -5.4217 -8.6265 16 1 2.5288 -4.0954 -10.3476 17 1 4.8916 -3.7988 -9.8882 18 6 2.1399 -1.8342 -5.5085 19 6 1.6892 -1.1526 -4.4012 20 6 2.0324 -0.7104 1.2304 21 6 2.1613 -0.0131 2.4170 22 6 2.6248 -0.6759 3.5429 23 6 2.9422 -2.0213 3.4330 24 6 2.7926 -2.6509 2.2120 25 7 2.3442 -1.9898 1.1626 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.9173 -1.1204 -1.0287 30 1 1.0871 0.6163 -2.5526 31 1 2.7589 1.0462 -2.1183 32 1 4.6406 -0.0664 -3.1537 33 1 5.4840 -1.2835 -5.1135 34 1 1.5032 -2.1787 -8.9283 35 1 1.4375 -2.3243 -6.1665 36 1 0.6309 -1.1086 -4.1905 37 1 1.9050 1.0349 2.4661 38 1 2.7353 -0.1570 4.4836 39 1 3.3064 -2.5690 4.2895 40 1 3.0422 -3.6973 2.1169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343771107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:24 Heat of formation + Delta-G solvation = 49.579676 kcal Electronic energy + Delta-G solvation = -20548.287657 eV Core-core repulsion = 17520.079303 eV Total energy + Delta-G solvation = -3028.208354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36960 -37.76302 -36.24376 -33.79469 -32.50485 -32.02072 -30.05074 -29.23491 -28.72080 -26.16670 -24.23781 -23.65651 -22.70809 -20.88797 -20.57131 -19.79680 -17.22668 -17.12046 -16.42121 -15.88248 -15.26072 -14.95370 -14.58112 -14.24836 -14.00625 -13.74962 -13.46832 -13.25422 -13.01345 -12.53429 -12.34267 -12.09288 -11.87789 -11.82846 -11.63725 -11.42650 -11.05102 -10.90634 -10.88807 -10.39507 -10.31327 -9.99267 -9.55925 -9.39643 -9.28982 -9.08742 -9.06368 -7.92691 -7.35725 -7.23049 -6.70078 -4.28315 0.97599 1.17680 2.81834 3.09947 3.12801 3.16113 3.24793 3.70546 3.97749 4.16697 4.37334 4.66152 4.70936 4.82828 4.95050 5.08835 5.23745 5.42603 5.49056 5.58064 5.75043 5.81510 5.89280 5.92648 5.98118 6.04276 6.05514 6.32496 6.34307 6.46244 6.54075 6.58203 7.03278 7.13531 7.37578 7.44084 7.48400 7.69154 7.85627 7.95618 8.04798 8.12848 8.23659 8.37645 8.71950 8.96481 9.05642 10.24533 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.003094 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.947576 B = 9046.968942 C = 9402.484992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.130 3.870 3 H 0.053 0.947 4 N -0.665 5.665 5 C 0.122 3.878 6 C -0.209 4.209 7 C -0.085 4.085 8 C -0.227 4.227 9 C 0.113 3.887 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.077 3.923 13 N -0.794 5.794 14 Si 0.907 3.093 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.167 4.167 19 C -0.077 4.077 20 C 0.132 3.868 21 C -0.172 4.172 22 C -0.077 4.077 23 C -0.183 4.183 24 C 0.102 3.898 25 N -0.458 5.458 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.348 0.652 30 H 0.063 0.937 31 H 0.016 0.984 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.280 0.720 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 3.059 18.325 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.020 3.980 3 H 0.071 0.929 4 N -0.298 5.298 5 C -0.005 4.005 6 C -0.211 4.211 7 C -0.104 4.104 8 C -0.247 4.247 9 C 0.110 3.890 10 C -0.494 4.494 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.731 3.269 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.186 4.186 19 C -0.096 4.096 20 C -0.007 4.007 21 C -0.192 4.192 22 C -0.103 4.103 23 C -0.203 4.203 24 C -0.056 4.056 25 N -0.166 5.166 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.168 0.832 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.360 2.431 17.186 17.516 hybrid contribution 1.066 0.416 0.516 1.256 sum -1.293 2.847 17.702 17.976 Atomic orbital electron populations 1.21755 0.93392 1.02821 1.01123 1.20454 0.96297 0.94398 0.86887 0.92895 1.60587 1.34683 1.32344 1.02157 1.20653 0.98889 0.91960 0.89022 1.18866 0.93209 1.10229 0.98804 1.20344 0.93878 0.99312 0.96895 1.20910 0.97811 1.06157 0.99826 1.17608 0.91676 0.88526 0.91161 1.19555 0.99544 1.31533 0.98791 0.90608 1.25896 0.94150 0.95179 0.98879 1.69825 1.12018 1.32335 1.27752 0.86396 0.79061 0.81861 0.79538 1.18832 1.20384 1.19088 1.21310 0.96284 1.03609 0.97446 1.20486 0.96782 0.97601 0.94750 1.21472 0.94107 0.90351 0.94720 1.21931 1.02185 1.01465 0.93655 1.21523 0.95721 0.94546 0.98512 1.22148 1.02794 0.95766 0.99580 1.22880 0.94259 1.00269 0.88152 1.67559 1.09454 1.08200 1.31412 0.91648 0.93108 0.91789 0.83211 0.91905 0.96612 0.90075 0.89255 0.90901 0.86542 0.89470 0.85004 0.85060 0.85029 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.40 37.16 0.35 -1.31 16 2 C 0.13 1.78 2.86 -68.86 -0.20 1.58 16 3 H 0.05 0.67 7.77 -51.93 -0.40 0.26 16 4 N -0.66 -11.32 6.04 -109.22 -0.66 -11.98 16 5 C 0.12 2.22 5.60 -4.98 -0.03 2.19 16 6 C -0.21 -4.67 5.41 -104.33 -0.56 -5.23 16 7 C -0.09 -1.96 9.67 -39.66 -0.38 -2.35 16 8 C -0.23 -5.75 9.80 -38.87 -0.38 -6.13 16 9 C 0.11 3.09 5.58 -106.83 -0.60 2.50 16 10 C -0.46 -12.65 9.05 -37.74 -0.34 -12.99 16 11 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 12 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 13 N -0.79 -20.95 10.95 55.55 0.61 -20.34 16 14 Si 0.91 19.07 29.59 -169.99 -5.03 14.03 16 15 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 C -0.17 -4.47 8.70 -38.87 -0.34 -4.81 16 19 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 20 C 0.13 1.73 5.70 -82.59 -0.47 1.26 16 21 C -0.17 -1.78 9.77 -39.44 -0.39 -2.16 16 22 C -0.08 -0.68 10.18 -39.28 -0.40 -1.08 16 23 C -0.18 -1.65 10.11 -39.44 -0.40 -2.05 16 24 C 0.10 1.15 11.18 -17.55 -0.20 0.95 16 25 N -0.46 -6.57 9.28 -9.47 -0.09 -6.66 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.80 7.45 -51.93 -0.39 0.42 16 29 H 0.35 6.30 7.84 -39.29 -0.31 5.99 16 30 H 0.06 1.10 7.38 -51.93 -0.38 0.71 16 31 H 0.02 0.27 7.99 -51.93 -0.42 -0.14 16 32 H 0.08 1.66 8.06 -52.48 -0.42 1.23 16 33 H 0.09 2.14 8.06 -52.48 -0.42 1.71 16 34 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 35 H 0.12 3.22 6.16 -52.48 -0.32 2.90 16 36 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -29.35 338.48 -10.45 -39.80 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.57 Total: 10.05 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -4.80 Total: -30.01 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.14 Total: -38.98 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.35 -10.45 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343771107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.382 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds