Wall clock time and date at job start Tue Mar 31 2020 06:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29026 * 124.91569 * 2 1 4 4 C 1.31771 * 117.12696 * 179.97438 * 3 2 1 5 5 C 1.50697 * 122.75385 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47374 * 145.02568 * 5 4 3 7 7 C 1.53006 * 109.47239 * 265.02705 * 5 4 3 8 8 N 1.46902 * 109.47181 * 25.02205 * 5 4 3 9 9 C 1.46901 * 111.00221 * 154.99895 * 8 5 4 10 10 C 1.52993 * 109.47164 * 180.02562 * 9 8 5 11 11 C 1.53002 * 109.47519 * 300.00442 * 10 9 8 12 12 C 1.53002 * 109.47260 * 60.00523 * 10 9 8 13 13 C 1.52999 * 109.47300 * 180.02562 * 10 9 8 14 14 C 1.50698 * 109.47406 * 179.97438 * 13 10 9 15 15 H 1.08004 * 120.00078 * 0.02562 * 14 13 10 16 16 C 1.37874 * 120.00025 * 179.97438 * 14 13 10 17 17 N 1.31520 * 120.00267 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00154 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46997 * 59.99794 * 18 16 14 20 20 H 1.48499 * 109.47416 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46912 * 300.00405 * 18 16 14 22 22 C 1.33648 * 114.49886 * 0.23582 * 4 3 2 23 23 S 1.70978 * 124.91625 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.47136 * 90.00007 * 1 2 3 25 25 H 1.09001 * 109.46901 * 210.00084 * 1 2 3 26 26 H 1.09001 * 109.47275 * 330.00043 * 1 2 3 27 27 H 1.09001 * 109.46998 * 299.99373 * 7 5 4 28 28 H 1.09000 * 109.47050 * 59.99664 * 7 5 4 29 29 H 1.09001 * 109.46801 * 179.97438 * 7 5 4 30 30 H 1.00902 * 110.99496 * 31.04816 * 8 5 4 31 31 H 1.09001 * 109.47359 * 300.00457 * 9 8 5 32 32 H 1.08999 * 109.46991 * 59.99963 * 9 8 5 33 33 H 1.08997 * 109.46954 * 59.99324 * 11 10 9 34 34 H 1.08993 * 109.46982 * 180.02562 * 11 10 9 35 35 H 1.09009 * 109.46597 * 300.00251 * 11 10 9 36 36 H 1.08996 * 109.47486 * 59.99510 * 12 10 9 37 37 H 1.09003 * 109.47408 * 179.97438 * 12 10 9 38 38 H 1.09007 * 109.46571 * 300.00048 * 12 10 9 39 39 H 1.09001 * 109.47222 * 300.00248 * 13 10 9 40 40 H 1.08999 * 109.47200 * 60.00183 * 13 10 9 41 41 H 0.97000 * 120.00162 * 179.97438 * 17 16 14 42 42 H 1.07998 * 126.03392 * 179.77096 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 1 5.4066 1.7538 0.5895 7 6 4.9577 2.3299 -1.4372 8 7 3.8951 3.2129 0.5848 9 6 4.9005 4.1262 1.1444 10 6 4.2020 5.3485 1.7434 11 6 3.4098 6.0696 0.6509 12 6 3.2484 4.8987 2.8521 13 6 5.2491 6.3000 2.3256 14 6 4.5612 7.5042 2.9150 15 1 3.4846 7.5829 2.8784 16 6 5.3060 8.5051 3.5020 17 7 6.6169 8.4091 3.5470 18 14 4.4532 9.9976 4.2332 19 1 3.5277 9.5610 5.3093 20 1 5.4696 10.9211 4.7983 21 1 3.6843 10.6973 3.1729 22 6 3.9354 -0.4006 -0.0040 23 16 2.4857 -1.4020 0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 5.4293 1.4483 -1.8711 28 1 4.0817 2.6007 -2.0267 29 1 5.6658 3.1585 -1.4375 30 1 3.2148 2.9524 1.2830 31 1 5.4645 3.6126 1.9230 32 1 5.5801 4.4463 0.3546 33 1 2.6638 5.3919 0.2357 34 1 2.9126 6.9406 1.0776 35 1 4.0892 6.3900 -0.1390 36 1 3.8127 4.3849 3.6304 37 1 2.7511 5.7695 3.2792 38 1 2.5024 4.2210 2.4369 39 1 5.8138 5.7865 3.1038 40 1 5.9281 6.6204 1.5355 41 1 7.1409 9.1134 3.9596 42 1 4.9545 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348207319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:17 Heat of formation + Delta-G solvation = 24.757209 kcal Electronic energy + Delta-G solvation = -20153.210923 eV Core-core repulsion = 17259.370138 eV Total energy + Delta-G solvation = -2893.840785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.20284 -37.59867 -35.10759 -32.59647 -31.82304 -29.65826 -28.11286 -26.81426 -26.26731 -25.61753 -24.01222 -22.37566 -21.26249 -19.76126 -18.01685 -17.46746 -16.20387 -15.71652 -15.37795 -15.05732 -14.55030 -14.32379 -13.95498 -13.54522 -13.39970 -13.11914 -12.85746 -12.54471 -12.40976 -12.24756 -11.98125 -11.93822 -11.81960 -11.41915 -11.06836 -10.85907 -10.76941 -10.71906 -10.41843 -10.17933 -10.07724 -9.70427 -9.60489 -9.54776 -8.95951 -8.86910 -8.74897 -8.26979 -7.97213 -5.91842 -3.91629 0.55149 1.19834 1.55598 2.68360 3.37950 3.42177 3.44828 3.87899 4.45156 4.55826 4.70361 5.01617 5.08135 5.19993 5.26898 5.41058 5.43807 5.43970 5.62577 5.73930 5.80132 5.85895 5.95133 6.07078 6.07782 6.32667 6.35637 6.42692 6.60927 6.77101 6.87818 6.91333 7.28165 7.30533 7.34796 7.45505 7.70426 7.75297 7.84508 7.92629 8.08884 8.53889 9.13601 9.70831 11.19873 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031728 B = 0.003335 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.294153 B = 8392.725050 C = 8810.640418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.050 3.950 3 N -0.448 5.448 4 C 0.078 3.922 5 C 0.156 3.844 6 H 0.056 0.944 7 C -0.133 4.133 8 N -0.669 5.669 9 C 0.068 3.932 10 C -0.057 4.057 11 C -0.115 4.115 12 C -0.129 4.129 13 C 0.034 3.966 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.261 4.261 23 S 0.098 5.902 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.346 0.654 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.012 0.988 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.321 -20.791 -8.382 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.228 4.228 3 N -0.163 5.163 4 C -0.054 4.054 5 C 0.043 3.957 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.303 5.303 9 C -0.061 4.061 10 C -0.057 4.057 11 C -0.173 4.173 12 C -0.186 4.186 13 C -0.003 4.003 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.203 1.203 22 C -0.400 4.400 23 S 0.352 5.648 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.167 0.833 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.678 -20.939 -8.909 24.354 hybrid contribution 0.704 1.014 1.265 1.767 sum -7.974 -19.925 -7.645 22.782 Atomic orbital electron populations 1.20448 0.85169 1.04271 1.03876 1.27148 1.01854 0.90611 1.03222 1.66066 1.04265 1.30843 1.15126 1.20457 0.90359 0.94001 1.00624 1.20107 0.91843 0.86330 0.97393 0.92659 1.21765 1.01689 1.01021 0.94621 1.60539 1.16305 1.13879 1.39540 1.22203 0.93348 0.93617 0.96910 1.20602 0.96806 0.93638 0.94651 1.21589 0.99078 0.99308 0.97276 1.21766 0.98405 1.00556 0.97889 1.19117 0.92882 0.92932 0.95380 1.21216 0.93183 1.03703 1.36316 0.92343 1.25012 0.94785 0.98311 0.96488 1.69959 1.04698 1.33884 1.45339 0.86728 0.79183 0.83002 0.79507 1.20377 1.21476 1.20305 1.26750 1.03036 0.95713 1.14506 1.83878 0.98288 1.13459 1.69201 0.89618 0.90274 0.88974 0.93093 0.91780 0.91646 0.83275 0.96077 0.91495 0.93673 0.92835 0.94267 0.94292 0.91772 0.94701 0.97004 0.96699 0.93159 0.80732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.46 36.01 0.38 -0.19 16 2 C 0.05 0.54 7.39 -13.45 -0.10 0.44 16 3 N -0.45 -6.06 9.76 -8.06 -0.08 -6.14 16 4 C 0.08 1.00 5.59 -84.23 -0.47 0.53 16 5 C 0.16 2.12 2.96 -68.86 -0.20 1.92 16 6 H 0.06 0.73 7.80 -51.93 -0.40 0.32 16 7 C -0.13 -1.67 9.40 37.16 0.35 -1.32 16 8 N -0.67 -10.67 5.34 -107.95 -0.58 -11.25 16 9 C 0.07 1.22 4.45 -3.83 -0.02 1.21 16 10 C -0.06 -1.17 0.60 -154.51 -0.09 -1.27 16 11 C -0.12 -2.34 8.06 37.16 0.30 -2.04 16 12 C -0.13 -2.53 7.89 37.16 0.29 -2.24 16 13 C 0.03 0.89 4.04 -27.88 -0.11 0.77 16 14 C -0.51 -14.10 7.65 -34.44 -0.26 -14.36 16 15 H 0.06 1.59 5.68 -52.48 -0.30 1.29 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 18 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.26 -2.76 11.14 29.12 0.32 -2.43 16 23 S 0.10 0.88 23.18 -107.50 -2.49 -1.61 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.84 7.45 -51.93 -0.39 0.46 16 30 H 0.35 5.72 5.99 -39.29 -0.24 5.49 16 31 H 0.02 0.38 8.06 -51.93 -0.42 -0.03 16 32 H 0.07 1.22 7.43 -51.93 -0.39 0.83 16 33 H 0.04 0.85 7.60 -51.93 -0.39 0.45 16 34 H 0.05 1.15 6.61 -51.93 -0.34 0.81 16 35 H 0.04 0.80 8.14 -51.92 -0.42 0.37 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.35 6.62 -51.93 -0.34 1.01 16 38 H 0.03 0.61 6.57 -51.93 -0.34 0.27 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -30.85 346.98 -8.83 -39.68 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.92 Total: 1.20 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 0.29 Total: -17.51 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.08 Total: -43.87 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.85 -8.83 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348207319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.440 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds