Wall clock time and date at job start Tue Mar 31 2020 06:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29026 * 124.91569 * 2 1 4 4 C 1.31771 * 117.12696 * 179.97438 * 3 2 1 5 5 C 1.50697 * 122.75385 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47374 * 145.02568 * 5 4 3 7 7 C 1.53006 * 109.47239 * 265.02705 * 5 4 3 8 8 N 1.46902 * 109.47181 * 25.02205 * 5 4 3 9 9 C 1.46901 * 111.00221 * 154.99895 * 8 5 4 10 10 C 1.52993 * 109.47164 * 180.02562 * 9 8 5 11 11 C 1.53002 * 109.47519 * 300.00442 * 10 9 8 12 12 C 1.53002 * 109.47260 * 60.00523 * 10 9 8 13 13 C 1.52999 * 109.47300 * 180.02562 * 10 9 8 14 14 C 1.50698 * 109.47406 * 179.97438 * 13 10 9 15 15 H 1.08004 * 120.00078 * 0.02562 * 14 13 10 16 16 C 1.37874 * 120.00025 * 179.97438 * 14 13 10 17 17 N 1.31520 * 120.00267 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00154 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46997 * 59.99794 * 18 16 14 20 20 H 1.48499 * 109.47416 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46912 * 300.00405 * 18 16 14 22 22 C 1.33648 * 114.49886 * 0.23582 * 4 3 2 23 23 S 1.70978 * 124.91625 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.47136 * 90.00007 * 1 2 3 25 25 H 1.09001 * 109.46901 * 210.00084 * 1 2 3 26 26 H 1.09001 * 109.47275 * 330.00043 * 1 2 3 27 27 H 1.09001 * 109.46998 * 299.99373 * 7 5 4 28 28 H 1.09000 * 109.47050 * 59.99664 * 7 5 4 29 29 H 1.09001 * 109.46801 * 179.97438 * 7 5 4 30 30 H 1.00902 * 110.99496 * 31.04816 * 8 5 4 31 31 H 1.09001 * 109.47359 * 300.00457 * 9 8 5 32 32 H 1.08999 * 109.46991 * 59.99963 * 9 8 5 33 33 H 1.08997 * 109.46954 * 59.99324 * 11 10 9 34 34 H 1.08993 * 109.46982 * 180.02562 * 11 10 9 35 35 H 1.09009 * 109.46597 * 300.00251 * 11 10 9 36 36 H 1.08996 * 109.47486 * 59.99510 * 12 10 9 37 37 H 1.09003 * 109.47408 * 179.97438 * 12 10 9 38 38 H 1.09007 * 109.46571 * 300.00048 * 12 10 9 39 39 H 1.09001 * 109.47222 * 300.00248 * 13 10 9 40 40 H 1.08999 * 109.47200 * 60.00183 * 13 10 9 41 41 H 0.97000 * 120.00162 * 179.97438 * 17 16 14 42 42 H 1.07998 * 126.03392 * 179.77096 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 1 5.4066 1.7538 0.5895 7 6 4.9577 2.3299 -1.4372 8 7 3.8951 3.2129 0.5848 9 6 4.9005 4.1262 1.1444 10 6 4.2020 5.3485 1.7434 11 6 3.4098 6.0696 0.6509 12 6 3.2484 4.8987 2.8521 13 6 5.2491 6.3000 2.3256 14 6 4.5612 7.5042 2.9150 15 1 3.4846 7.5829 2.8784 16 6 5.3060 8.5051 3.5020 17 7 6.6169 8.4091 3.5470 18 14 4.4532 9.9976 4.2332 19 1 3.5277 9.5610 5.3093 20 1 5.4696 10.9211 4.7983 21 1 3.6843 10.6973 3.1729 22 6 3.9354 -0.4006 -0.0040 23 16 2.4857 -1.4020 0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 5.4293 1.4483 -1.8711 28 1 4.0817 2.6007 -2.0267 29 1 5.6658 3.1585 -1.4375 30 1 3.2148 2.9524 1.2830 31 1 5.4645 3.6126 1.9230 32 1 5.5801 4.4463 0.3546 33 1 2.6638 5.3919 0.2357 34 1 2.9126 6.9406 1.0776 35 1 4.0892 6.3900 -0.1390 36 1 3.8127 4.3849 3.6304 37 1 2.7511 5.7695 3.2792 38 1 2.5024 4.2210 2.4369 39 1 5.8138 5.7865 3.1038 40 1 5.9281 6.6204 1.5355 41 1 7.1409 9.1134 3.9596 42 1 4.9545 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348207319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:17 Heat of formation + Delta-G solvation = 6.098846 kcal Electronic energy + Delta-G solvation = -20154.020011 eV Core-core repulsion = 17259.370138 eV Total energy + Delta-G solvation = -2894.649873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07956 -39.12967 -36.44701 -34.47321 -32.91274 -30.80161 -29.03516 -28.71531 -27.91698 -27.00442 -25.36989 -23.94084 -22.32989 -20.60022 -19.57297 -18.50555 -18.32388 -16.83563 -16.57045 -16.35334 -15.91362 -15.48289 -15.34945 -14.84102 -14.66243 -14.26627 -14.16312 -13.89309 -13.73075 -13.49905 -13.13035 -13.03067 -12.96368 -12.83547 -12.70260 -12.57891 -12.33612 -12.24844 -12.12444 -11.94863 -11.89246 -11.37447 -10.85846 -10.75396 -10.49850 -10.49245 -10.32216 -9.62650 -9.25446 -8.13234 -6.20267 -0.22299 0.46795 0.77462 1.41006 1.43539 1.50815 1.82578 2.44404 3.07072 3.20392 3.31444 3.86331 4.15335 4.15849 4.23696 4.36183 4.39403 4.45357 4.47081 4.67967 4.71013 4.72212 4.75158 4.86229 4.94271 4.97900 5.06684 5.07680 5.20824 5.21084 5.25108 5.35115 5.50692 5.53660 5.57552 5.66556 5.86991 5.92867 6.11410 6.37871 6.51627 6.90663 6.94287 7.46812 8.98970 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031728 B = 0.003335 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.294153 B = 8392.725050 C = 8810.640418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.035 3.965 3 N -0.487 5.487 4 C 0.054 3.946 5 C 0.154 3.846 6 H 0.060 0.940 7 C -0.126 4.126 8 N -0.668 5.668 9 C 0.081 3.919 10 C -0.053 4.053 11 C -0.104 4.104 12 C -0.120 4.120 13 C 0.042 3.958 14 C -0.516 4.516 15 H 0.065 0.935 16 C -0.003 4.003 17 N -0.938 5.938 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.269 1.269 22 C -0.265 4.265 23 S 0.152 5.848 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.344 0.656 31 H 0.016 0.984 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.031 0.969 36 H 0.035 0.965 37 H 0.048 0.952 38 H 0.059 0.941 39 H -0.016 1.016 40 H -0.014 1.014 41 H 0.260 0.740 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.925 -22.393 -8.679 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.242 4.242 3 N -0.203 5.203 4 C -0.078 4.078 5 C 0.042 3.958 6 H 0.077 0.923 7 C -0.184 4.184 8 N -0.301 5.301 9 C -0.048 4.048 10 C -0.054 4.054 11 C -0.161 4.161 12 C -0.177 4.177 13 C 0.005 3.995 14 C -0.554 4.554 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.579 5.579 18 Si 0.781 3.219 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.404 4.404 23 S 0.407 5.593 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.165 0.835 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.002 0.998 40 H 0.004 0.996 41 H 0.069 0.931 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -10.304 -22.561 -9.217 26.460 hybrid contribution 1.202 1.387 1.323 2.262 sum -9.102 -21.174 -7.894 24.362 Atomic orbital electron populations 1.20595 0.83252 1.05076 1.04891 1.27679 1.03236 0.90978 1.02350 1.66045 1.04745 1.32634 1.16861 1.20316 0.90329 0.94345 1.02779 1.20137 0.92296 0.85864 0.97514 0.92251 1.21708 1.00958 1.01703 0.94066 1.60481 1.15669 1.15033 1.38917 1.21914 0.93382 0.93015 0.96490 1.20471 0.95848 0.93850 0.95211 1.21468 0.99009 0.98953 0.96698 1.21655 0.98431 1.00293 0.97335 1.18982 0.93391 0.93474 0.93685 1.21588 0.93602 1.04314 1.35889 0.91742 1.25912 0.95425 1.01605 0.97072 1.70103 1.06304 1.35023 1.46470 0.85632 0.78161 0.79115 0.78951 1.19305 1.21238 1.19362 1.27054 1.04849 0.95510 1.13029 1.83668 0.96383 1.11495 1.67736 0.88405 0.87944 0.89692 0.90863 0.93100 0.92493 0.83546 0.96546 0.92006 0.91887 0.94298 0.94977 0.94600 0.93319 0.92195 0.99763 0.99585 0.93137 0.78845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.46 71.24 0.75 -0.23 16 2 C 0.04 0.69 7.39 88.52 0.65 1.34 16 3 N -0.49 -12.54 9.76 -179.40 -1.75 -14.29 16 4 C 0.05 1.33 5.59 41.52 0.23 1.56 16 5 C 0.15 4.06 2.96 44.17 0.13 4.19 16 6 H 0.06 1.51 7.80 -2.39 -0.02 1.49 16 7 C -0.13 -3.06 9.40 71.98 0.68 -2.39 16 8 N -0.67 -20.94 5.34 -495.45 -2.65 -23.58 16 9 C 0.08 2.95 4.45 86.30 0.38 3.33 16 10 C -0.05 -2.24 0.60 -52.18 -0.03 -2.27 16 11 C -0.10 -4.22 8.06 71.98 0.58 -3.64 16 12 C -0.12 -4.67 7.89 71.98 0.57 -4.10 16 13 C 0.04 2.25 4.04 29.85 0.12 2.37 16 14 C -0.52 -29.23 7.65 25.60 0.20 -29.03 16 15 H 0.06 3.51 5.68 -2.91 -0.02 3.50 16 16 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 17 N -0.94 -58.10 13.29 21.45 0.28 -57.81 16 18 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 C -0.26 -5.01 11.14 66.78 0.74 -4.27 16 23 S 0.15 2.34 23.18 -56.49 -1.31 1.03 16 24 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.45 7.45 -2.39 -0.02 1.43 16 30 H 0.34 11.06 5.99 -89.69 -0.54 10.52 16 31 H 0.02 0.61 8.06 -2.39 -0.02 0.59 16 32 H 0.06 2.30 7.43 -2.39 -0.02 2.28 16 33 H 0.06 2.32 7.60 -2.39 -0.02 2.30 16 34 H 0.04 1.66 6.61 -2.39 -0.02 1.64 16 35 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 2.03 6.62 -2.39 -0.02 2.01 16 38 H 0.06 2.03 6.57 -2.38 -0.02 2.01 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -67.05 346.98 2.53 -64.53 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.46 Total: 15.80 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 5.46 Total: -32.86 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -4.11 Total: -95.68 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.31 Total: 1.03 kcal Total: -67.05 2.53 -64.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348207319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.624 kcal (2) G-P(sol) polarization free energy of solvation -67.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds