Wall clock time and date at job start Tue Mar 31 2020 05:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46866 * 2 1 4 4 C 1.38225 * 119.61964 * 125.00274 * 3 2 1 5 5 C 1.38626 * 119.16509 * 180.02562 * 4 3 2 6 6 C 1.38673 * 118.42036 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.42112 * 180.02562 * 6 5 4 8 8 N 1.46493 * 109.47458 * 89.99256 * 7 6 5 9 9 C 1.38858 * 120.00111 * 179.97438 * 8 7 6 10 10 C 1.39560 * 119.84183 * 179.97438 * 9 8 7 11 11 C 1.36341 * 120.15763 * 180.25479 * 10 9 8 12 12 C 1.40885 * 119.83926 * 359.50554 * 11 10 9 13 13 C 1.41135 * 120.15727 * 180.25203 * 12 11 10 14 14 H 1.08005 * 119.99735 * 204.76475 * 13 12 11 15 15 C 1.39863 * 120.00231 * 24.76272 * 13 12 11 16 16 N 1.30899 * 119.99869 * 17.83024 * 15 13 12 17 17 Si 1.86797 * 120.00303 * 197.82492 * 15 13 12 18 18 H 1.48508 * 109.47140 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46976 * 119.99881 * 17 15 13 20 20 H 1.48491 * 109.47244 * 240.00282 * 17 15 13 21 21 C 1.40891 * 119.68517 * 0.51587 * 12 11 10 22 22 C 1.36331 * 119.83691 * 359.73504 * 21 12 11 23 23 C 1.38186 * 119.15992 * 0.26633 * 6 5 4 24 24 N 1.31853 * 119.62149 * 305.02725 * 3 2 1 25 25 H 1.09007 * 109.47295 * 299.99446 * 1 2 3 26 26 H 1.08995 * 109.47438 * 59.99957 * 1 2 3 27 27 H 1.09007 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46939 * 240.00483 * 2 1 3 29 29 H 1.08995 * 109.47438 * 120.00043 * 2 1 3 30 30 H 1.08005 * 120.41435 * 0.04120 * 4 3 2 31 31 H 1.07999 * 120.79235 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.46666 * 329.98945 * 7 6 5 33 33 H 1.09006 * 109.46799 * 209.99878 * 7 6 5 34 34 H 0.96996 * 120.00066 * 359.97438 * 8 7 6 35 35 H 1.07995 * 119.92254 * 359.97438 * 10 9 8 36 36 H 1.08010 * 120.08000 * 179.75156 * 11 10 9 37 37 H 0.97001 * 120.00319 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.07805 * 179.70999 * 21 12 11 39 39 H 1.08004 * 119.92235 * 179.97438 * 22 21 12 40 40 H 1.08000 * 119.61797 * 179.70680 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9098 1.8352 0.9843 5 6 3.3655 3.1444 0.9756 6 6 2.9190 3.9920 -0.0271 7 6 3.3859 5.4239 -0.0799 8 7 4.6032 5.5110 -0.8901 9 6 5.2217 6.7391 -1.0841 10 6 6.3816 6.8182 -1.8562 11 6 6.9970 8.0198 -2.0465 12 6 6.4534 9.1849 -1.4704 13 6 7.0820 10.4331 -1.6675 14 1 6.9400 11.2284 -0.9507 15 6 7.8889 10.6401 -2.7910 16 7 7.7944 9.8382 -3.8213 17 14 9.1012 12.0609 -2.8214 18 1 9.0148 12.8127 -1.5437 19 1 10.4785 11.5328 -2.9923 20 1 8.7743 12.9663 -3.9521 21 6 5.2825 9.0973 -0.6918 22 6 4.6806 7.8882 -0.5056 23 6 2.0366 3.5084 -0.9742 24 7 1.6292 2.2546 -0.9386 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2366 1.1475 1.7503 31 1 4.0512 3.4962 1.7322 32 1 3.5958 5.7750 0.9304 33 1 2.6076 6.0435 -0.5255 34 1 4.9773 4.7110 -1.2911 35 1 6.7952 5.9249 -2.3001 36 1 7.8969 8.0790 -2.6410 37 1 8.3538 9.9819 -4.6007 38 1 4.8629 9.9856 -0.2432 39 1 3.7832 7.8194 0.0913 40 1 1.6805 4.1633 -1.7556 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352780365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:48 Heat of formation + Delta-G solvation = 44.767011 kcal Electronic energy + Delta-G solvation = -20160.389961 eV Core-core repulsion = 17131.972914 eV Total energy + Delta-G solvation = -3028.417047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48729 -37.97191 -35.73151 -34.19368 -33.00612 -32.34487 -30.64926 -29.47881 -28.40158 -26.14753 -24.37401 -23.90981 -22.91997 -21.42349 -20.63109 -20.12139 -17.21716 -16.88711 -16.49420 -16.13483 -15.48833 -14.93379 -14.70130 -14.52312 -14.01765 -13.85419 -13.45812 -13.26668 -13.19722 -12.79482 -12.54093 -12.31823 -12.04507 -11.91137 -11.67966 -11.36340 -11.34461 -11.24985 -11.01639 -10.80998 -10.48518 -9.94746 -9.68667 -9.52441 -9.31713 -9.24763 -8.96270 -8.56108 -7.49895 -6.65418 -6.40986 -4.04328 0.92484 1.16062 2.89624 3.09445 3.15323 3.20634 3.34155 3.58380 4.05209 4.09590 4.46659 4.48850 4.74379 4.74892 4.80273 4.92188 5.00161 5.08800 5.17921 5.40386 5.57188 5.61368 5.71390 5.78736 5.84770 5.87409 5.96633 6.06056 6.25838 6.26982 6.29222 6.58584 6.83775 7.05301 7.19257 7.30238 7.57348 7.65619 7.78493 7.86571 8.14699 8.33095 8.46244 8.65037 8.78749 9.05519 9.14231 10.36701 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.055457 B = 0.002573 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.775546 B =10878.665339 C =11002.835064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C 0.125 3.875 4 C -0.175 4.175 5 C -0.057 4.057 6 C -0.150 4.150 7 C 0.183 3.817 8 N -0.758 5.758 9 C 0.090 3.910 10 C -0.161 4.161 11 C -0.123 4.123 12 C 0.075 3.925 13 C -0.466 4.466 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.807 5.807 17 Si 0.903 3.097 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.277 1.277 21 C -0.189 4.189 22 C -0.159 4.159 23 C 0.120 3.880 24 N -0.483 5.483 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.385 0.615 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.276 0.724 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.997 -15.496 7.150 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.012 4.012 4 C -0.194 4.194 5 C -0.083 4.083 6 C -0.152 4.152 7 C 0.058 3.942 8 N -0.394 5.394 9 C -0.007 4.007 10 C -0.183 4.183 11 C -0.143 4.143 12 C 0.072 3.928 13 C -0.497 4.497 14 H 0.091 0.909 15 C -0.141 4.141 16 N -0.434 5.434 17 Si 0.728 3.272 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.210 4.210 22 C -0.181 4.181 23 C -0.038 4.038 24 N -0.192 5.192 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.218 0.782 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.625 -15.725 6.387 19.512 hybrid contribution 1.336 0.727 0.354 1.562 sum -8.289 -14.998 6.741 18.414 Atomic orbital electron populations 1.21668 0.94166 1.01574 1.02691 1.20467 0.97004 0.90590 1.02964 1.21293 0.93267 0.96116 0.90569 1.21966 0.99909 0.96889 1.00670 1.21575 0.96682 0.92882 0.97160 1.21084 0.99431 0.97829 0.96890 1.19803 0.88499 0.89866 0.96081 1.43853 1.28568 1.07113 1.59851 1.17328 0.95881 0.84794 1.02662 1.20032 0.97110 0.97575 1.03554 1.20927 1.00367 0.90731 1.02304 1.17512 0.90511 0.93178 0.91584 1.19400 1.25419 0.98507 1.06369 0.90884 1.25808 0.96514 0.97174 0.94635 1.69860 1.33827 1.36185 1.03566 0.86361 0.80503 0.81319 0.79049 1.18624 1.19969 1.20270 1.20557 0.97866 0.95362 1.07171 1.19856 1.00809 0.92465 1.04942 1.22744 0.93012 0.91516 0.96528 1.67484 1.24311 1.03708 1.23709 0.92982 0.91517 0.92449 0.90097 0.90522 0.84959 0.84663 0.92547 0.92359 0.78247 0.89577 0.86326 0.91352 0.89078 0.89454 0.82567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.77 37.16 0.36 -0.75 16 2 C -0.07 -0.59 6.33 -27.88 -0.18 -0.76 16 3 C 0.13 1.36 6.18 -82.59 -0.51 0.85 16 4 C -0.17 -1.74 9.71 -39.44 -0.38 -2.12 16 5 C -0.06 -0.62 9.86 -39.28 -0.39 -1.01 16 6 C -0.15 -1.85 5.27 -104.48 -0.55 -2.40 16 7 C 0.18 2.60 5.04 -5.20 -0.03 2.58 16 8 N -0.76 -13.02 5.69 -59.68 -0.34 -13.36 16 9 C 0.09 1.94 6.67 -83.69 -0.56 1.38 16 10 C -0.16 -3.76 9.82 -39.77 -0.39 -4.15 16 11 C -0.12 -3.24 8.64 -39.26 -0.34 -3.57 16 12 C 0.08 2.03 5.57 -106.79 -0.60 1.44 16 13 C -0.47 -12.66 9.03 -37.88 -0.34 -13.00 16 14 H 0.07 1.92 7.91 -52.48 -0.41 1.51 16 15 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 16 N -0.81 -21.48 10.96 55.54 0.61 -20.87 16 17 Si 0.90 19.24 29.60 -169.99 -5.03 14.21 16 18 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 C -0.19 -4.68 9.74 -39.27 -0.38 -5.06 16 22 C -0.16 -3.53 9.23 -39.77 -0.37 -3.90 16 23 C 0.12 1.50 10.86 -17.55 -0.19 1.31 16 24 N -0.48 -6.14 9.88 -9.47 -0.09 -6.23 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.61 7.95 -51.93 -0.41 0.20 16 27 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.47 7.87 -51.93 -0.41 0.06 16 30 H 0.13 0.97 7.95 -52.48 -0.42 0.55 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.06 0.80 7.88 -51.93 -0.41 0.39 16 33 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 34 H 0.39 6.24 8.46 -40.82 -0.35 5.89 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.12 3.23 6.17 -52.48 -0.32 2.90 16 37 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 38 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.09 1.71 6.68 -52.48 -0.35 1.36 16 40 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -28.98 337.99 -10.27 -39.25 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.59 Total: 9.27 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -4.92 Total: -27.37 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.18 Total: -40.46 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.98 -10.27 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352780365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.016 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds