Wall clock time and date at job start Tue Mar 31 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47066 * 2 1 4 4 C 1.36190 * 126.46843 * 96.12939 * 3 2 1 5 5 C 1.50700 * 125.65398 * 0.02562 * 4 3 2 6 6 N 1.30387 * 108.68477 * 179.97438 * 4 3 2 7 7 C 1.34238 * 109.40559 * 0.02562 * 6 4 3 8 8 N 1.48077 * 125.94543 * 179.73700 * 7 6 4 9 9 O 1.21798 * 120.00332 * 0.02562 * 8 7 6 10 10 O 1.21805 * 119.99791 * 180.02562 * 8 7 6 11 11 C 1.35422 * 108.10435 * 359.97438 * 7 6 4 12 12 N 1.39573 * 126.63078 * 180.02562 * 11 7 6 13 13 C 1.46897 * 111.00118 * 171.94800 * 12 11 7 14 14 C 1.52994 * 109.47241 * 176.91066 * 13 12 11 15 15 C 1.53002 * 109.47474 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.47425 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99944 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99794 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99855 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00260 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47210 * 89.99621 * 20 18 16 22 22 H 1.48501 * 109.47164 * 209.99580 * 20 18 16 23 23 H 1.48500 * 109.46894 * 329.99836 * 20 18 16 24 24 H 1.08993 * 109.47337 * 50.56160 * 1 2 3 25 25 H 1.09008 * 109.46548 * 170.55979 * 1 2 3 26 26 H 1.09000 * 109.47107 * 290.55575 * 1 2 3 27 27 H 1.08997 * 109.47317 * 240.00393 * 2 1 3 28 28 H 1.08995 * 109.47477 * 120.00056 * 2 1 3 29 29 H 1.08998 * 109.47066 * 269.97971 * 5 4 3 30 30 H 1.08995 * 109.47099 * 29.98567 * 5 4 3 31 31 H 1.09003 * 109.46749 * 149.98169 * 5 4 3 32 32 H 1.00902 * 110.99884 * 295.90163 * 12 11 7 33 33 H 1.09007 * 109.46661 * 296.91200 * 13 12 11 34 34 H 1.09001 * 109.47279 * 56.90997 * 13 12 11 35 35 H 1.09003 * 109.47036 * 299.99354 * 14 13 12 36 36 H 1.09001 * 109.47041 * 59.99784 * 14 13 12 37 37 H 1.09007 * 109.46606 * 300.00242 * 15 14 13 38 38 H 1.09007 * 109.46620 * 59.99395 * 15 14 13 39 39 H 0.96993 * 120.00445 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3984 2.1055 1.0890 5 6 2.3891 1.6181 2.5149 6 7 2.7726 3.2900 0.6929 7 6 2.6500 3.3737 -0.6412 8 7 2.9689 4.5580 -1.4709 9 8 3.3842 5.5755 -0.9458 10 8 2.8159 4.5147 -2.6785 11 6 2.1790 2.1881 -1.0957 12 7 1.9095 1.8529 -2.4235 13 6 1.5943 0.4239 -2.5522 14 6 1.2304 0.1108 -4.0048 15 6 0.9027 -1.3777 -4.1390 16 6 0.5436 -1.6861 -5.5697 17 1 0.5490 -0.8991 -6.3095 18 6 0.2092 -2.9730 -5.9345 19 7 -0.1037 -3.2422 -7.1832 20 14 0.2005 -4.3341 -4.6552 21 1 -1.1468 -4.4242 -4.0374 22 1 0.5344 -5.6267 -5.3055 23 1 1.2072 -4.0333 -3.6057 24 1 -0.3633 0.6528 -0.7936 25 1 -0.3633 -1.0139 -0.1686 26 1 -0.3633 0.3608 0.9622 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.4235 1.8411 2.9688 30 1 2.5587 0.5415 2.5320 31 1 3.1784 2.1192 3.0753 32 1 1.1647 2.4225 -2.7962 33 1 2.4621 -0.1673 -2.2594 34 1 0.7521 0.1780 -1.9055 35 1 0.3627 0.7019 -4.2975 36 1 2.0726 0.3567 -4.6515 37 1 1.7707 -1.9686 -3.8464 38 1 0.0606 -1.6241 -3.4921 39 1 -0.3393 -4.1474 -7.4399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360914269.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:47 Heat of formation + Delta-G solvation = 71.717995 kcal Electronic energy + Delta-G solvation = -22516.353056 eV Core-core repulsion = 19078.255429 eV Total energy + Delta-G solvation = -3438.097627 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.19220 -41.50923 -37.82150 -36.22462 -35.35915 -33.96767 -32.20124 -31.33911 -30.73877 -28.51756 -27.06755 -25.11467 -23.95835 -22.91154 -21.75550 -20.61750 -20.30696 -18.91610 -18.24043 -17.64130 -16.97671 -16.94397 -16.60318 -15.80944 -15.42321 -14.72705 -14.56458 -14.21229 -13.93818 -13.69564 -13.12748 -12.99221 -12.88080 -12.66604 -12.56687 -12.14803 -11.71827 -11.33771 -11.23430 -11.19844 -11.01007 -10.89304 -10.75160 -10.50141 -10.27475 -10.07121 -9.93826 -9.85102 -9.37490 -8.68938 -8.38908 -6.17683 -4.17418 0.38311 1.24620 1.42139 2.05243 2.45812 3.15318 3.22440 3.25201 3.31726 3.87666 4.00500 4.08756 4.29646 4.36954 4.62635 4.75238 4.83163 4.96102 5.00044 5.05719 5.10741 5.15608 5.24294 5.36698 5.42528 5.52536 5.64398 5.92541 6.14902 6.26584 6.54051 6.55893 6.62100 6.71271 7.03369 7.13821 7.15396 7.61430 8.00574 8.38606 8.87426 9.42951 10.95737 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020851 B = 0.004300 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.569531 B = 6510.716434 C = 7685.071156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.064 3.936 3 N -0.469 5.469 4 C 0.237 3.763 5 C -0.066 4.066 6 N -0.434 5.434 7 C 0.007 3.993 8 N 0.077 4.923 9 O -0.162 6.162 10 O -0.154 6.154 11 C 0.298 3.702 12 N -0.573 5.573 13 C 0.014 3.986 14 C -0.104 4.104 15 C -0.009 4.009 16 C -0.525 4.525 17 H 0.074 0.926 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.267 1.267 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.382 0.618 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.016 0.984 38 H 0.010 0.990 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 5.193 20.353 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.056 4.056 3 N -0.160 5.160 4 C -0.029 4.029 5 C -0.125 4.125 6 N -0.154 5.154 7 C -0.204 4.204 8 N 0.595 4.405 9 O -0.375 6.375 10 O -0.366 6.366 11 C 0.076 3.924 12 N -0.207 5.207 13 C -0.112 4.112 14 C -0.142 4.142 15 C -0.047 4.047 16 C -0.562 4.562 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.537 5.537 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.192 1.192 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.143 0.857 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.213 0.787 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.028 0.972 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.274 4.982 20.812 21.520 hybrid contribution -0.915 -1.188 0.031 1.500 sum 1.359 3.794 20.843 21.229 Atomic orbital electron populations 1.22322 0.93052 1.04647 1.03218 1.22924 0.96669 0.78614 1.07426 1.46190 1.50167 1.14075 1.05607 1.23343 1.02136 0.85989 0.91421 1.20294 1.04957 1.01601 0.85622 1.69604 1.19502 1.18476 1.07809 1.19958 1.21812 0.88180 0.90408 1.42074 0.97926 1.00157 1.00380 1.94540 1.47323 1.19447 1.76230 1.94590 1.57564 1.89397 0.95005 1.19290 0.98601 0.89361 0.85174 1.57885 1.46686 1.08960 1.07138 1.23465 1.00770 0.84532 1.02418 1.21575 1.01735 0.99793 0.91107 1.19518 0.95974 0.90889 0.98309 1.21069 1.46482 0.95711 0.92986 0.90801 1.25039 0.94594 0.98621 0.95160 1.69903 1.46405 1.20704 1.16728 0.86785 0.78617 0.81777 0.82072 1.20304 1.21235 1.19206 0.91278 0.89055 0.91311 0.85698 0.87756 0.89292 0.89973 0.88390 0.78674 0.89814 0.91465 0.92022 0.90963 0.96543 0.97164 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.14 37.16 0.34 -0.86 16 2 C 0.06 0.47 5.78 -4.04 -0.02 0.45 16 3 N -0.47 -4.84 2.79 -112.61 -0.31 -5.16 16 4 C 0.24 2.49 7.94 -154.45 -1.23 1.27 16 5 C -0.07 -0.36 10.19 36.01 0.37 0.00 16 6 N -0.43 -6.29 11.22 -7.44 -0.08 -6.38 16 7 C 0.01 0.11 8.04 -145.13 -1.17 -1.06 16 8 N 0.08 1.34 4.46 32.78 0.15 1.49 16 9 O -0.16 -2.95 19.24 -29.46 -0.57 -3.51 16 10 O -0.15 -2.67 18.23 -29.46 -0.54 -3.20 16 11 C 0.30 3.97 7.29 -151.70 -1.11 2.86 16 12 N -0.57 -7.57 5.80 -59.81 -0.35 -7.92 16 13 C 0.01 0.18 3.87 -3.83 -0.01 0.17 16 14 C -0.10 -1.75 5.38 -26.73 -0.14 -1.90 16 15 C -0.01 -0.19 4.04 -27.89 -0.11 -0.30 16 16 C -0.52 -13.99 9.66 -34.44 -0.33 -14.32 16 17 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 18 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 19 N -0.90 -26.68 13.96 55.43 0.77 -25.90 16 20 Si 0.88 20.08 27.47 -169.99 -4.67 15.41 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.27 -5.69 6.54 56.52 0.37 -5.32 16 24 H 0.07 0.58 6.76 -51.93 -0.35 0.23 16 25 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.13 1.04 4.16 -51.93 -0.22 0.82 16 28 H 0.10 0.47 6.91 -51.93 -0.36 0.11 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.27 7.02 -51.93 -0.36 -0.10 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.38 4.73 8.62 -39.29 -0.34 4.40 16 33 H 0.08 1.05 6.59 -51.93 -0.34 0.71 16 34 H 0.07 0.74 3.19 -51.93 -0.17 0.57 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.02 0.34 7.20 -51.93 -0.37 -0.03 16 38 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -33.34 323.91 -9.26 -42.61 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.03 Total: -0.39 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.52 Total: -11.92 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.18 Total: -43.87 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -1.10 Total: -6.72 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.67 Total: 15.41 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.34 -9.26 -42.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360914269.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.323 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds