Wall clock time and date at job start Tue Mar 31 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46908 * 110.99638 * 2 1 4 4 C 1.50701 * 109.46748 * 66.04580 * 3 2 1 5 5 C 1.38631 * 119.75064 * 269.72526 * 4 3 2 6 6 C 1.37618 * 120.24804 * 179.72847 * 5 4 3 7 7 C 1.40721 * 119.74374 * 0.56643 * 6 5 4 8 8 C 1.41390 * 120.24294 * 179.68263 * 7 6 5 9 9 H 1.08006 * 119.99745 * 204.40928 * 8 7 6 10 10 C 1.39944 * 120.00351 * 24.41506 * 8 7 6 11 11 N 1.30826 * 120.00064 * 17.83604 * 10 8 7 12 12 Si 1.86796 * 120.00243 * 197.84642 * 10 8 7 13 13 H 1.48502 * 109.47359 * 59.99331 * 12 10 8 14 14 H 1.48493 * 109.47435 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46785 * 299.99490 * 12 10 8 16 16 C 1.40718 * 119.51052 * 359.71211 * 7 6 5 17 17 C 1.37620 * 119.74675 * 359.97438 * 16 7 6 18 18 C 1.46895 * 111.00003 * 236.04836 * 2 1 3 19 19 C 1.50698 * 109.47357 * 293.95161 * 18 2 1 20 20 C 1.38229 * 119.62068 * 94.99512 * 19 18 2 21 21 C 1.38628 * 119.16109 * 179.97438 * 20 19 18 22 22 C 1.38663 * 118.42137 * 0.02562 * 21 20 19 23 23 C 1.38178 * 119.16673 * 0.27704 * 22 21 20 24 24 N 1.31855 * 119.61646 * 274.98117 * 19 18 2 25 25 H 1.09004 * 109.47059 * 183.95146 * 1 2 3 26 26 H 1.08998 * 109.47356 * 303.94953 * 1 2 3 27 27 H 1.08994 * 109.47705 * 63.95258 * 1 2 3 28 28 H 1.08996 * 109.46742 * 186.05031 * 3 2 1 29 29 H 1.08998 * 109.47042 * 306.04763 * 3 2 1 30 30 H 1.08001 * 119.87893 * 359.97438 * 5 4 3 31 31 H 1.07999 * 120.13026 * 180.28086 * 6 5 4 32 32 H 0.96992 * 120.00215 * 180.02562 * 11 10 8 33 33 H 1.07993 * 120.12468 * 179.97438 * 16 7 6 34 34 H 1.07996 * 119.87755 * 180.02562 * 17 16 7 35 35 H 1.08994 * 109.47318 * 173.94923 * 18 2 1 36 36 H 1.09006 * 109.47302 * 53.94924 * 18 2 1 37 37 H 1.08002 * 120.41632 * 0.02562 * 20 19 18 38 38 H 1.08001 * 120.78832 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.42114 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.62544 * 179.70428 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2985 5 6 0.4489 2.7544 1.4008 6 6 0.1086 3.3706 2.5833 7 6 0.9774 3.2907 3.6874 8 6 0.6414 3.9254 4.9054 9 1 1.4193 4.2103 5.5984 10 6 -0.6990 4.1845 5.2130 11 7 -1.6505 3.5521 4.5756 12 14 -1.1297 5.4335 6.5335 13 1 -0.5852 6.7622 6.1548 14 1 -2.6059 5.5238 6.6670 15 1 -0.5403 5.0079 7.8284 16 6 2.1832 2.5749 3.5702 17 6 2.5000 1.9611 2.3799 18 6 1.9954 -0.7659 -1.1376 19 6 1.6370 -2.2203 -0.9729 20 6 0.5017 -2.7177 -1.5849 21 6 0.1813 -4.0573 -1.4275 22 6 1.0181 -4.8499 -0.6566 23 6 2.1325 -4.2811 -0.0703 24 7 2.4101 -3.0038 -0.2470 25 1 -0.3633 -1.0253 0.0708 26 1 -0.3634 0.5739 0.8524 27 1 -0.3634 0.4512 -0.9232 28 1 3.0796 1.3445 -0.1083 29 1 1.5610 1.9274 -0.8309 30 1 -0.2139 2.8188 0.5505 31 1 -0.8194 3.9174 2.6623 32 1 -2.5795 3.7320 4.7885 33 1 2.8574 2.5075 4.4111 34 1 3.4247 1.4109 2.2878 35 1 3.0796 -0.6610 -1.1757 36 1 1.5610 -0.3872 -2.0628 37 1 -0.1272 -2.0711 -2.1788 38 1 -0.6992 -4.4736 -1.8942 39 1 0.7990 -5.8975 -0.5123 40 1 2.7868 -4.8905 0.5356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398994970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:17 Heat of formation + Delta-G solvation = 57.511240 kcal Electronic energy + Delta-G solvation = -20820.356062 eV Core-core repulsion = 17792.491647 eV Total energy + Delta-G solvation = -3027.864415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.24794 -38.05925 -36.44253 -33.71361 -32.53353 -31.86626 -30.04430 -29.26742 -27.25716 -27.05833 -24.55699 -23.49618 -22.50703 -21.11113 -20.76167 -19.67314 -17.24948 -16.86898 -16.31158 -15.69478 -15.44282 -15.23392 -14.69621 -14.47762 -13.90437 -13.57254 -13.36037 -13.34820 -13.09093 -12.68449 -12.40153 -11.94313 -11.80421 -11.69354 -11.40644 -11.31617 -11.16913 -10.99998 -10.89675 -10.51316 -10.27984 -9.90337 -9.56205 -9.37270 -9.32814 -9.12009 -9.02659 -7.91168 -7.37790 -7.23828 -6.72698 -4.30825 1.05386 1.25591 2.78184 3.07712 3.10468 3.13828 3.21545 3.73672 3.95343 4.28006 4.44571 4.68493 4.77811 4.82349 4.98727 5.08467 5.41344 5.42925 5.61781 5.66948 5.72902 5.76611 5.84195 5.95314 6.03913 6.10089 6.14238 6.29524 6.41766 6.47206 6.51046 6.65094 6.99410 7.11239 7.29911 7.42481 7.46403 7.48075 7.67064 7.94026 8.05724 8.09734 8.19584 8.35411 8.68261 8.93906 9.02679 10.21619 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.027206 B = 0.003314 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.954607 B = 8448.074962 C = 8669.026386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.525 5.525 3 C 0.122 3.878 4 C -0.208 4.208 5 C -0.094 4.094 6 C -0.167 4.167 7 C 0.113 3.887 8 C -0.464 4.464 9 H 0.076 0.924 10 C 0.077 3.923 11 N -0.793 5.793 12 Si 0.907 3.093 13 H -0.264 1.264 14 H -0.279 1.279 15 H -0.266 1.266 16 C -0.228 4.228 17 C -0.067 4.067 18 C 0.100 3.900 19 C 0.148 3.852 20 C -0.169 4.169 21 C -0.077 4.077 22 C -0.182 4.182 23 C 0.100 3.900 24 N -0.465 5.465 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.017 0.983 28 H 0.066 0.934 29 H 0.024 0.976 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.280 0.720 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -10.829 -11.299 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.249 5.249 3 C -0.004 4.004 4 C -0.209 4.209 5 C -0.113 4.113 6 C -0.186 4.186 7 C 0.110 3.890 8 C -0.494 4.494 9 H 0.094 0.906 10 C -0.141 4.141 11 N -0.419 5.419 12 Si 0.731 3.269 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.190 1.190 16 C -0.248 4.248 17 C -0.086 4.086 18 C -0.029 4.029 19 C 0.009 3.991 20 C -0.189 4.189 21 C -0.103 4.103 22 C -0.202 4.202 23 C -0.057 4.057 24 N -0.174 5.174 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.993 -10.723 -10.492 15.134 hybrid contribution -1.515 0.340 -0.431 1.611 sum 0.478 -10.383 -10.922 15.078 Atomic orbital electron populations 1.22467 0.87593 1.01349 1.01119 1.62060 1.07924 1.14723 1.40170 1.20765 0.98446 0.85716 0.95471 1.18819 0.98450 1.08467 0.95205 1.20508 0.95174 0.98817 0.96788 1.21266 1.01563 1.03999 0.91814 1.17610 0.90494 0.88339 0.92528 1.19570 0.92314 1.34185 1.03282 0.90556 1.25896 0.96294 0.94949 0.96967 1.69825 1.01282 1.33473 1.37307 0.86392 0.77700 0.81597 0.81164 1.18868 1.20394 1.19030 1.20970 1.00797 1.06079 0.96953 1.20340 0.97338 0.97859 0.93054 1.20985 1.01415 0.87762 0.92720 1.21184 0.90580 0.95850 0.91462 1.22002 0.98433 0.96294 1.02220 1.21529 0.98688 0.93645 0.96483 1.22107 0.96921 1.01237 0.99951 1.22793 0.95207 0.91267 0.96469 1.67524 1.31284 1.04896 1.13719 0.92610 0.89586 0.96462 0.91560 0.95742 0.89953 0.86602 0.90924 0.89155 0.89424 0.89270 0.93773 0.85167 0.85092 0.85077 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.86 60.06 0.53 0.91 16 2 N -0.52 -9.02 4.74 -245.83 -1.17 -10.19 16 3 C 0.12 2.18 5.11 -4.97 -0.03 2.16 16 4 C -0.21 -4.54 4.91 -104.33 -0.51 -5.05 16 5 C -0.09 -2.17 7.87 -39.66 -0.31 -2.48 16 6 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 7 C 0.11 3.05 5.58 -106.82 -0.60 2.45 16 8 C -0.46 -12.50 9.05 -37.74 -0.34 -12.84 16 9 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 10 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 11 N -0.79 -20.70 10.95 55.55 0.61 -20.09 16 12 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 13 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 14 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 C -0.23 -5.76 9.80 -38.87 -0.38 -6.14 16 17 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 18 C 0.10 1.41 5.29 -4.98 -0.03 1.38 16 19 C 0.15 2.08 5.64 -82.59 -0.47 1.61 16 20 C -0.17 -1.97 8.36 -39.44 -0.33 -2.30 16 21 C -0.08 -0.78 10.18 -39.28 -0.40 -1.18 16 22 C -0.18 -1.81 10.11 -39.45 -0.40 -2.20 16 23 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 24 N -0.47 -6.95 10.27 -9.47 -0.10 -7.05 16 25 H 0.06 0.88 6.40 -51.93 -0.33 0.55 16 26 H 0.09 1.69 5.90 -51.93 -0.31 1.39 16 27 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 1.11 7.87 -51.93 -0.41 0.71 16 29 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 30 H 0.08 1.73 7.99 -52.49 -0.42 1.31 16 31 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 32 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 33 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 34 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 36 H 0.04 0.54 8.02 -51.93 -0.42 0.12 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -29.36 333.34 -10.47 -39.83 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.55 Total: 6.12 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -4.26 Total: -27.46 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.66 Total: -37.33 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.36 -10.47 -39.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398994970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.339 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds