Wall clock time and date at job start Tue Mar 31 2020 07:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47059 * 2 1 4 4 C 1.52998 * 109.47201 * 240.00246 * 2 1 3 5 5 C 1.53000 * 109.47104 * 120.00030 * 2 1 3 6 6 N 1.46892 * 109.47256 * 81.04765 * 5 2 1 7 7 C 1.46895 * 111.00216 * 77.48296 * 6 5 2 8 8 C 1.50697 * 109.47051 * 81.92468 * 7 6 5 9 9 H 1.07999 * 120.00208 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00270 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99712 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00454 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46712 * 89.99947 * 12 10 8 14 14 H 1.48497 * 109.47323 * 210.00050 * 12 10 8 15 15 H 1.48496 * 109.46914 * 330.00369 * 12 10 8 16 16 C 1.46906 * 110.99746 * 313.53255 * 6 5 2 17 17 C 1.53002 * 109.46865 * 295.40804 * 16 6 5 18 18 C 1.50698 * 109.47266 * 184.83634 * 17 16 6 19 19 C 1.33638 * 126.03895 * 89.71045 * 18 17 16 20 20 N 1.31784 * 114.50079 * 179.79143 * 19 18 17 21 21 C 1.29020 * 117.12228 * 0.52326 * 20 19 18 22 22 S 1.70981 * 110.17035 * 359.71528 * 21 20 19 23 23 H 1.08999 * 109.46789 * 279.74956 * 1 2 3 24 24 H 1.08996 * 109.47008 * 39.75431 * 1 2 3 25 25 H 1.09004 * 109.46335 * 159.74824 * 1 2 3 26 26 H 1.08995 * 109.47651 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47037 * 300.00369 * 3 2 1 28 28 H 1.09000 * 109.46937 * 59.99963 * 3 2 1 29 29 H 1.08996 * 109.46863 * 297.90861 * 4 2 1 30 30 H 1.08997 * 109.47487 * 57.91620 * 4 2 1 31 31 H 1.09007 * 109.46883 * 177.90920 * 4 2 1 32 32 H 1.08993 * 109.47162 * 321.04323 * 5 2 1 33 33 H 1.09000 * 109.47073 * 201.04551 * 5 2 1 34 34 H 1.09009 * 109.47339 * 201.92273 * 7 6 5 35 35 H 1.08996 * 109.47221 * 321.92500 * 7 6 5 36 36 H 0.97007 * 119.99848 * 179.97438 * 11 10 8 37 37 H 1.08991 * 109.47400 * 55.40669 * 16 6 5 38 38 H 1.09000 * 109.47097 * 175.41152 * 16 6 5 39 39 H 1.09004 * 109.47342 * 304.83600 * 17 16 6 40 40 H 1.08999 * 109.47176 * 64.83135 * 17 16 6 41 41 H 1.07999 * 122.75137 * 359.97438 * 19 18 17 42 42 H 1.08000 * 124.91783 * 179.67650 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 2.0001 -2.1728 1.0272 7 6 3.1246 -2.6082 0.1885 8 6 4.3563 -2.7663 1.0422 9 1 4.3086 -2.5632 2.1019 10 6 5.5442 -3.1703 0.4706 11 7 5.6022 -3.4182 -0.8197 12 14 7.0712 -3.3657 1.5288 13 1 7.1374 -4.7543 2.0507 14 1 8.2790 -3.0860 0.7114 15 1 7.0110 -2.4120 2.6654 16 6 0.7166 -2.5803 0.4400 17 6 -0.4111 -2.3017 1.4357 18 6 -1.7107 -2.8276 0.8829 19 6 -2.2023 -4.0569 1.0649 20 7 -3.3633 -4.2732 0.4801 21 6 -3.8733 -3.2982 -0.1936 22 16 -2.8465 -1.9328 -0.1239 23 1 -0.3633 0.1740 1.0128 24 1 -0.3633 0.7900 -0.6572 25 1 -0.3632 -0.9642 -0.3558 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.7077 -1.7591 -1.2307 30 1 1.6466 -0.2294 -2.1388 31 1 3.1295 -0.6888 -1.2681 32 1 1.4078 -0.4662 2.0996 33 1 3.0654 -0.4131 1.4535 34 1 2.8814 -3.5627 -0.2786 35 1 3.3115 -1.8627 -0.5844 36 1 6.4381 -3.7021 -1.2219 37 1 0.5405 -2.0160 -0.4756 38 1 0.7440 -3.6456 0.2108 39 1 -0.1916 -2.7973 2.3815 40 1 -0.4942 -1.2273 1.5994 41 1 -1.6916 -4.8103 1.6461 42 1 -4.8126 -3.3388 -0.7251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411283990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:09 Heat of formation + Delta-G solvation = 94.350109 kcal Electronic energy + Delta-G solvation = -21107.888229 eV Core-core repulsion = 18217.065219 eV Total energy + Delta-G solvation = -2890.823011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03357 -39.32610 -34.10339 -33.51375 -31.94129 -28.90179 -27.78672 -26.69940 -26.52368 -25.54016 -24.06090 -22.20433 -20.26489 -19.94657 -18.54725 -17.90257 -16.42176 -15.96587 -15.27790 -14.82402 -14.66730 -14.26486 -14.08585 -13.92593 -13.57373 -13.42318 -12.96348 -12.43972 -12.31007 -12.05143 -11.88718 -11.48430 -11.26256 -11.14740 -10.96377 -10.91628 -10.75733 -10.69775 -10.41055 -10.31456 -9.96279 -9.74384 -9.69131 -9.52439 -9.27782 -9.12524 -8.80544 -8.33807 -6.97619 -5.96900 -3.96571 0.73856 1.36988 1.76329 2.87642 3.33966 3.40274 3.43754 4.34552 4.45484 4.80106 5.07890 5.18525 5.19905 5.23990 5.31887 5.36830 5.41430 5.56992 5.74920 5.79908 5.88989 5.92522 5.97238 6.06747 6.11911 6.15620 6.21996 6.27536 6.35519 6.41013 6.52646 6.58014 6.68552 6.80866 6.89407 7.27210 7.49760 7.70610 7.87972 8.17714 8.26158 8.60905 9.10414 9.66017 11.12471 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.004847 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.241515 B = 5775.804721 C = 6592.980625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.100 4.100 3 C -0.135 4.135 4 C -0.161 4.161 5 C 0.069 3.931 6 N -0.529 5.529 7 C 0.154 3.846 8 C -0.498 4.498 9 H 0.060 0.940 10 C 0.053 3.947 11 N -0.902 5.902 12 Si 0.894 3.106 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.275 1.275 16 C 0.033 3.967 17 C -0.062 4.062 18 C -0.189 4.189 19 C 0.020 3.980 20 N -0.468 5.468 21 C 0.000 4.000 22 S 0.109 5.891 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.020 0.980 35 H 0.044 0.956 36 H 0.259 0.741 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.176 0.824 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.637 6.797 0.354 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.102 4.102 3 C -0.193 4.193 4 C -0.217 4.217 5 C -0.060 4.060 6 N -0.251 5.251 7 C 0.030 3.970 8 C -0.537 4.537 9 H 0.078 0.922 10 C -0.147 4.147 11 N -0.542 5.542 12 Si 0.722 3.278 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.200 1.200 16 C -0.096 4.096 17 C -0.102 4.102 18 C -0.310 4.310 19 C -0.129 4.129 20 N -0.181 5.181 21 C -0.298 4.298 22 S 0.361 5.639 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.193 0.807 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.841 6.949 0.279 17.300 hybrid contribution 1.152 -0.547 0.165 1.286 sum -14.689 6.402 0.444 16.029 Atomic orbital electron populations 1.22803 0.95845 1.02236 1.00936 1.21214 0.94882 0.96080 0.98000 1.21826 1.01310 0.95453 1.00664 1.22750 1.02471 1.00948 0.95560 1.22259 1.01491 0.88072 0.94142 1.62275 1.01736 1.11361 1.49750 1.20669 0.86939 0.96416 0.92988 1.21229 0.93286 1.44058 0.95160 0.92187 1.24951 0.98842 0.95975 0.94935 1.69950 1.26621 1.47427 1.10222 0.86568 0.82554 0.78425 0.80267 1.20818 1.21469 1.19953 1.22849 0.89876 1.00925 0.95925 1.20682 0.87319 1.02516 0.99700 1.26182 1.02626 0.97490 1.04705 1.21807 0.92296 0.96241 1.02604 1.66303 1.11192 1.31327 1.09325 1.28298 1.04973 0.92629 1.03860 1.84066 1.14176 1.18676 1.46987 0.92455 0.93549 0.90786 0.92407 0.93447 0.93176 0.90528 0.94485 0.90126 0.92630 0.90270 0.96193 0.93914 0.93110 0.91827 0.91727 0.89197 0.88995 0.80714 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 6.89 37.16 0.26 -1.83 16 2 C -0.10 -1.52 0.77 -154.51 -0.12 -1.63 16 3 C -0.13 -1.84 8.28 37.16 0.31 -1.53 16 4 C -0.16 -2.79 6.41 37.16 0.24 -2.55 16 5 C 0.07 1.21 4.70 -3.83 -0.02 1.20 16 6 N -0.53 -10.52 4.60 -236.08 -1.09 -11.61 16 7 C 0.15 3.76 3.64 -4.98 -0.02 3.74 16 8 C -0.50 -13.65 8.86 -34.44 -0.31 -13.95 16 9 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 10 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 11 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 12 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 16 C 0.03 0.55 3.78 -3.82 -0.01 0.53 16 17 C -0.06 -0.86 4.60 -27.88 -0.13 -0.99 16 18 C -0.19 -2.43 5.65 -35.92 -0.20 -2.64 16 19 C 0.02 0.27 11.25 -19.18 -0.22 0.06 16 20 N -0.47 -6.37 10.54 -15.75 -0.17 -6.53 16 21 C 0.00 0.00 12.23 51.58 0.63 0.63 16 22 S 0.11 1.18 21.99 -107.50 -2.36 -1.18 16 23 H 0.06 0.69 5.80 -51.93 -0.30 0.39 16 24 H 0.05 0.55 7.97 -51.93 -0.41 0.13 16 25 H 0.07 0.98 2.72 -51.93 -0.14 0.84 16 26 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 27 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.43 3.58 -51.93 -0.19 1.24 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.63 6.25 -51.93 -0.32 1.30 16 32 H 0.06 0.88 6.87 -51.93 -0.36 0.52 16 33 H 0.08 1.57 7.41 -51.93 -0.38 1.18 16 34 H 0.02 0.54 7.65 -51.92 -0.40 0.14 16 35 H 0.04 1.06 3.32 -51.93 -0.17 0.89 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.06 1.05 2.45 -51.93 -0.13 0.92 16 38 H 0.06 1.18 7.83 -51.93 -0.41 0.77 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.19 3.72 -51.93 -0.19 1.00 16 41 H 0.18 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.19 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -29.42 322.27 -8.64 -38.06 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.91 Total: 2.98 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 0.31 Total: -17.57 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.52 Total: -43.67 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.36 Total: -1.18 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.42 -8.64 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411283990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.407 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds