Wall clock time and date at job start Tue Mar 31 2020 07:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46972 * 2 1 4 4 C 1.52997 * 109.47153 * 119.99834 * 2 1 3 5 5 C 1.53007 * 109.47061 * 175.00606 * 4 2 1 6 6 N 1.46899 * 109.46812 * 181.34000 * 5 4 2 7 7 C 1.46895 * 111.00212 * 287.58066 * 6 5 4 8 8 C 1.50705 * 109.47338 * 298.16146 * 7 6 5 9 9 H 1.07998 * 119.99720 * 4.95052 * 8 7 6 10 10 C 1.37873 * 119.99978 * 184.95166 * 8 7 6 11 11 N 1.31518 * 120.00198 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99968 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47456 * 59.99694 * 12 10 8 14 14 H 1.48501 * 109.47410 * 180.02562 * 12 10 8 15 15 H 1.48511 * 109.47004 * 300.00295 * 12 10 8 16 16 C 1.46910 * 110.99678 * 163.63154 * 6 5 4 17 17 C 1.52999 * 109.46667 * 189.99951 * 16 6 5 18 18 C 1.50699 * 109.46744 * 180.02562 * 17 16 6 19 19 C 1.33644 * 126.04055 * 89.71508 * 18 17 16 20 20 N 1.31783 * 114.50133 * 179.78929 * 19 18 17 21 21 C 1.29023 * 117.12489 * 0.51936 * 20 19 18 22 22 S 1.70980 * 110.16853 * 359.71660 * 21 20 19 23 23 H 1.08993 * 109.47370 * 299.99863 * 1 2 3 24 24 H 1.08999 * 109.47400 * 60.00204 * 1 2 3 25 25 H 1.09001 * 109.46665 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47370 * 240.00137 * 2 1 3 27 27 H 1.09003 * 109.47017 * 59.99855 * 3 2 1 28 28 H 1.09002 * 109.47440 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46892 * 300.00107 * 3 2 1 30 30 H 1.08992 * 109.47385 * 55.00519 * 4 2 1 31 31 H 1.08999 * 109.47284 * 295.00376 * 4 2 1 32 32 H 1.08994 * 109.47479 * 61.33544 * 5 4 2 33 33 H 1.08999 * 109.46902 * 301.33699 * 5 4 2 34 34 H 1.09007 * 109.47001 * 58.15542 * 7 6 5 35 35 H 1.08998 * 109.47728 * 178.15601 * 7 6 5 36 36 H 0.97003 * 119.99656 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.47095 * 309.99697 * 16 6 5 38 38 H 1.08992 * 109.46962 * 69.99669 * 16 6 5 39 39 H 1.09000 * 109.47155 * 299.99709 * 17 16 6 40 40 H 1.08992 * 109.47661 * 60.00145 * 17 16 6 41 41 H 1.08001 * 122.74900 * 359.97163 * 19 18 17 42 42 H 1.08002 * 124.92028 * 179.68485 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1880 6 7 4.0518 -1.5515 2.3718 7 6 3.9443 -0.7182 3.5767 8 6 4.8040 0.5093 3.4169 9 1 5.3100 0.6961 2.4813 10 6 4.9446 1.3937 4.4652 11 7 4.3289 1.1659 5.6048 12 14 6.0096 2.9155 4.2670 13 1 5.4774 3.7516 3.1611 14 1 5.9963 3.6970 5.5296 15 1 7.4025 2.5073 3.9525 16 6 5.4314 -2.0163 2.1746 17 6 5.8166 -2.9666 3.3101 18 6 7.2320 -3.4429 3.1082 19 6 8.3351 -2.8508 3.5758 20 7 9.4586 -3.4663 3.2667 21 6 9.3654 -4.5389 2.5556 22 16 7.7254 -4.8746 2.2073 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6055 -1.7197 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 4.0004 0.1680 1.1660 33 1 3.8543 -1.3732 0.2879 34 1 2.9061 -0.4184 3.7197 35 1 4.2808 -1.2871 4.4434 36 1 4.4281 1.7880 6.3425 37 1 5.5057 -2.5400 1.2216 38 1 6.1063 -1.1604 2.1723 39 1 5.7424 -2.4429 4.2632 40 1 5.1417 -3.8225 3.3124 41 1 8.3078 -1.9439 4.1616 42 1 10.2021 -5.1378 2.2275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411309882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:14 Heat of formation + Delta-G solvation = 22.982389 kcal Electronic energy + Delta-G solvation = -20238.638274 eV Core-core repulsion = 17344.720527 eV Total energy + Delta-G solvation = -2893.917747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.41948 -37.67876 -35.62235 -32.96152 -32.17528 -28.97636 -27.76376 -26.85255 -26.24790 -24.51092 -23.42506 -22.01200 -19.94342 -19.54016 -19.30331 -17.79837 -16.38168 -15.60477 -15.12865 -14.75124 -14.60851 -14.19582 -14.05709 -13.78385 -13.50342 -13.37872 -12.80072 -12.57908 -12.18743 -11.98599 -11.94721 -11.72100 -11.32254 -11.18195 -11.06982 -10.91018 -10.62925 -10.53098 -10.27050 -10.22083 -10.11163 -9.93036 -9.85355 -9.52494 -9.47587 -9.05652 -8.66310 -8.42356 -7.18693 -6.04895 -4.13260 0.91197 1.53577 1.92418 3.05990 3.26477 3.32169 3.34641 4.38536 4.50263 4.80533 5.23983 5.25932 5.31341 5.33610 5.39844 5.48719 5.62104 5.79598 5.87700 5.90949 5.95989 6.05122 6.10203 6.16046 6.22919 6.23776 6.38713 6.43630 6.47365 6.56905 6.59731 6.64765 6.76705 6.93590 6.98277 7.25165 7.51949 7.87493 7.88726 8.04835 8.25333 8.28662 8.96236 9.53146 10.99850 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011801 B = 0.005554 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.156109 B = 5040.101158 C = 6789.395850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.104 4.104 5 C 0.060 3.940 6 N -0.544 5.544 7 C 0.183 3.817 8 C -0.546 4.546 9 H 0.055 0.945 10 C 0.068 3.932 11 N -0.890 5.890 12 Si 0.882 3.118 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.072 3.928 17 C -0.041 4.041 18 C -0.181 4.181 19 C 0.021 3.979 20 N -0.467 5.467 21 C 0.000 4.000 22 S 0.097 5.903 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.262 0.738 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.179 0.821 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 -8.850 -8.878 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.142 4.142 5 C -0.068 4.068 6 N -0.268 5.268 7 C 0.058 3.942 8 C -0.585 4.585 9 H 0.073 0.927 10 C -0.135 4.135 11 N -0.528 5.528 12 Si 0.710 3.290 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.057 4.057 17 C -0.081 4.081 18 C -0.302 4.302 19 C -0.128 4.128 20 N -0.181 5.181 21 C -0.298 4.298 22 S 0.348 5.652 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.196 0.804 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.550 -9.803 -9.003 13.321 hybrid contribution 1.270 2.447 0.382 2.783 sum 1.820 -7.356 -8.621 11.478 Atomic orbital electron populations 1.21820 0.95873 1.01214 1.01254 1.21074 0.95073 0.96488 0.98654 1.21868 1.01619 0.95935 1.00996 1.21541 0.95658 0.99811 0.97194 1.21981 0.94888 0.97841 0.92117 1.62498 1.18780 1.40661 1.04825 1.19819 0.96998 0.90245 0.87173 1.21638 1.30067 1.08061 0.98706 0.92699 1.24900 0.95556 0.97781 0.95217 1.69924 1.42733 1.37013 1.03148 0.86811 0.81223 0.83508 0.77450 1.20292 1.21207 1.20246 1.21827 0.91543 0.96944 0.95426 1.20138 0.86768 0.99421 1.01761 1.26214 1.01970 0.98247 1.03801 1.21885 0.85451 1.02096 1.03367 1.66303 1.31375 1.07416 1.12968 1.28222 1.00066 0.99027 1.02469 1.83923 1.03815 1.26482 1.50939 0.92712 0.93397 0.93040 0.92035 0.92489 0.92259 0.93804 0.92396 0.91320 0.93147 0.93666 0.95200 0.94671 0.92776 0.93270 0.93487 0.88339 0.90600 0.80434 0.79018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 2 C -0.09 -1.33 2.92 -90.62 -0.26 -1.59 16 3 C -0.15 -2.16 8.95 37.16 0.33 -1.83 16 4 C -0.10 -1.75 4.71 -26.73 -0.13 -1.88 16 5 C 0.06 1.11 4.53 -3.82 -0.02 1.09 16 6 N -0.54 -10.94 4.66 -236.07 -1.10 -12.04 16 7 C 0.18 4.40 4.77 -4.98 -0.02 4.38 16 8 C -0.55 -14.17 7.33 -34.44 -0.25 -14.42 16 9 H 0.05 1.43 5.96 -52.49 -0.31 1.12 16 10 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 11 N -0.89 -25.25 13.29 55.43 0.74 -24.52 16 12 Si 0.88 21.03 29.54 -169.99 -5.02 16.00 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.07 1.33 4.75 -3.82 -0.02 1.31 16 17 C -0.04 -0.69 5.68 -27.88 -0.16 -0.85 16 18 C -0.18 -2.82 5.85 -35.92 -0.21 -3.03 16 19 C 0.02 0.35 11.25 -19.18 -0.22 0.14 16 20 N -0.47 -7.40 10.54 -15.75 -0.17 -7.57 16 21 C 0.00 0.00 12.23 51.58 0.63 0.63 16 22 S 0.10 1.21 23.22 -107.50 -2.50 -1.28 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.94 6.59 -51.93 -0.34 0.59 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.32 6.80 -51.93 -0.35 0.97 16 32 H 0.05 1.04 4.69 -51.93 -0.24 0.79 16 33 H 0.04 0.76 7.80 -51.93 -0.41 0.36 16 34 H 0.03 0.78 6.68 -51.93 -0.35 0.43 16 35 H 0.04 0.90 6.38 -51.93 -0.33 0.57 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.05 0.83 7.86 -51.93 -0.41 0.42 16 38 H 0.05 0.98 6.53 -51.93 -0.34 0.64 16 39 H 0.10 1.89 6.51 -51.93 -0.34 1.55 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.18 2.98 8.06 -52.49 -0.42 2.55 16 42 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -28.05 345.55 -9.70 -37.75 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.78 Total: 2.19 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -0.08 Total: -15.75 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.53 Total: -44.12 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.50 Total: -1.28 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.05 -9.70 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411309882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.736 kcal (2) G-P(sol) polarization free energy of solvation -28.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds