Wall clock time and date at job start Tue Mar 31 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00023 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99532 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00003 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47381 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.47001 * 119.99934 * 10 8 6 13 13 H 1.48497 * 109.47392 * 239.99632 * 10 8 6 14 14 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 15 15 C 1.38327 * 119.87627 * 279.72277 * 14 2 1 16 16 C 1.38016 * 120.12254 * 179.76390 * 15 14 2 17 17 C 1.39352 * 119.87654 * 0.53617 * 16 15 14 18 18 C 1.48361 * 120.12374 * 179.69878 * 17 16 15 19 19 C 1.39770 * 120.90674 * 179.74228 * 18 17 16 20 20 C 1.37972 * 119.01955 * 179.73093 * 19 18 17 21 21 N 1.31926 * 120.88710 * 0.55693 * 20 19 18 22 22 C 1.31923 * 122.00105 * 359.71601 * 21 20 19 23 23 C 1.37987 * 120.88143 * 359.97438 * 22 21 20 24 24 C 1.39356 * 119.75386 * 359.71961 * 17 16 15 25 25 C 1.38013 * 119.87516 * 0.02562 * 24 17 16 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 28 28 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 29 29 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 30 30 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 31 31 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 32 32 H 0.97001 * 119.99132 * 180.02562 * 9 8 6 33 33 H 1.08004 * 119.93984 * 0.02562 * 15 14 2 34 34 H 1.07998 * 120.06219 * 180.23253 * 16 15 14 35 35 H 1.08003 * 120.48516 * 359.97438 * 19 18 17 36 36 H 1.08005 * 119.55892 * 180.27382 * 20 19 18 37 37 H 1.07999 * 119.55992 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.49049 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.06090 * 179.97438 * 24 17 16 40 40 H 1.08003 * 119.93798 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5885 -0.5214 3.5557 7 1 2.8381 -1.5694 3.4794 8 6 2.7319 0.1355 4.7595 9 7 2.4274 1.4116 4.8525 10 14 3.3584 -0.7870 6.2581 11 1 3.6269 -2.2010 5.8925 12 1 4.6118 -0.1535 6.7410 13 1 2.3343 -0.7399 7.3323 14 6 2.0323 -0.7104 -1.2304 15 6 2.0710 -2.0928 -1.2603 16 6 2.5255 -2.7488 -2.3864 17 6 2.9564 -2.0157 -3.4903 18 6 3.4523 -2.7151 -4.7011 19 6 3.8834 -1.9962 -5.8195 20 6 4.3424 -2.6862 -6.9226 21 7 4.3670 -4.0052 -6.9344 22 6 3.9641 -4.7211 -5.9022 23 6 3.4961 -4.1110 -4.7564 24 6 2.9202 -0.6231 -3.4527 25 6 2.4588 0.0223 -2.3234 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 2.9173 -1.1205 1.0288 30 1 2.7589 1.0462 2.1182 31 1 1.0871 0.6164 2.5525 32 1 2.5287 1.8737 5.6993 33 1 1.7409 -2.6600 -0.4025 34 1 2.5517 -3.8282 -2.4101 35 1 3.8613 -0.9164 -5.8187 36 1 4.6818 -2.1393 -7.7900 37 1 4.0010 -5.7992 -5.9547 38 1 3.1675 -4.7033 -3.9153 39 1 3.2533 -0.0500 -4.3053 40 1 2.4307 1.1015 -2.2929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411473000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:40 Heat of formation + Delta-G solvation = 51.983956 kcal Electronic energy + Delta-G solvation = -20321.576271 eV Core-core repulsion = 17293.472175 eV Total energy + Delta-G solvation = -3028.104096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53363 -39.20767 -36.20979 -33.66683 -32.55969 -31.79343 -30.76586 -30.33453 -28.49206 -26.19207 -24.46228 -24.14639 -22.36987 -22.12754 -21.19474 -19.86946 -17.82071 -16.71611 -16.43981 -16.14803 -15.42223 -15.09563 -14.69202 -14.55618 -14.22060 -14.08496 -14.06180 -13.56616 -13.44424 -13.09873 -12.58052 -12.40813 -12.12926 -12.03300 -11.63925 -11.51699 -11.28038 -10.91568 -10.88333 -10.60440 -10.36105 -10.31462 -9.89874 -9.73864 -9.42522 -9.20453 -8.93073 -8.52200 -8.26247 -7.39264 -6.06819 -4.08665 0.44027 0.90077 1.43144 1.81513 3.28726 3.36159 3.40987 3.52603 3.94300 4.20512 4.28006 4.39964 4.46517 4.75799 4.83489 4.90549 4.91818 5.01371 5.17688 5.29647 5.34059 5.49538 5.51342 5.54391 5.61308 5.73470 5.88001 5.95568 5.99231 6.07306 6.21580 6.32471 6.41742 6.48185 6.53755 6.64888 6.75264 6.98019 7.21906 7.36855 7.73165 7.74960 8.08509 8.33013 8.54671 9.00650 9.56427 11.04367 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028502 B = 0.002892 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.155181 B = 9679.113430 C =10179.664093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.115 3.885 3 H 0.045 0.955 4 N -0.682 5.682 5 C 0.194 3.806 6 C -0.514 4.514 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.899 3.101 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C -0.060 4.060 15 C -0.099 4.099 16 C -0.101 4.101 17 C -0.075 4.075 18 C 0.014 3.986 19 C -0.172 4.172 20 C 0.100 3.900 21 N -0.495 5.495 22 C 0.101 3.899 23 C -0.170 4.170 24 C -0.101 4.101 25 C -0.118 4.118 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.331 0.669 30 H -0.014 1.014 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.138 0.862 39 H 0.122 0.878 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 -6.579 -20.853 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.005 3.995 3 H 0.063 0.937 4 N -0.313 5.313 5 C 0.067 3.933 6 C -0.552 4.552 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.727 3.273 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.061 4.061 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.075 4.075 18 C 0.006 3.994 19 C -0.191 4.191 20 C -0.056 4.056 21 N -0.204 5.204 22 C -0.055 4.055 23 C -0.190 4.190 24 C -0.120 4.120 25 C -0.136 4.136 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.004 0.996 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.156 0.844 39 H 0.140 0.860 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.384 -7.107 -21.293 22.451 hybrid contribution 0.802 0.718 1.475 1.826 sum 1.186 -6.389 -19.818 20.856 Atomic orbital electron populations 1.21736 0.94121 1.02050 1.00904 1.20513 0.95930 0.95337 0.87735 0.93733 1.60848 1.32554 1.34591 1.03324 1.19614 0.96595 0.90196 0.86856 1.21208 1.43252 0.96781 0.93984 0.91909 1.24992 0.95647 0.94908 0.99049 1.69972 1.48864 1.09026 1.25853 0.86431 0.78373 0.79968 0.82573 1.19640 1.21093 1.20983 1.20372 0.96042 0.94147 0.95514 1.21131 0.98433 0.94154 0.97959 1.21233 0.98336 0.99682 0.92656 1.18601 1.02541 0.93217 0.93179 1.19235 0.94046 0.93140 0.92944 1.22238 1.01297 1.01536 0.94066 1.22672 0.95349 0.90147 0.97410 1.67640 1.15507 1.08110 1.29149 1.22688 0.93951 1.00318 0.88552 1.22267 1.02021 0.94491 1.00232 1.21109 0.99480 0.93200 0.98171 1.21036 0.99529 1.00045 0.93038 0.91923 0.93552 0.92284 0.85214 0.99579 0.95190 0.92945 0.84320 0.85819 0.84586 0.82746 0.82684 0.84442 0.85969 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.39 37.16 0.35 -1.72 16 2 C 0.12 1.97 2.81 -68.86 -0.19 1.77 16 3 H 0.04 0.80 7.65 -51.93 -0.40 0.41 16 4 N -0.68 -14.04 5.67 -109.22 -0.62 -14.66 16 5 C 0.19 4.96 5.24 -4.98 -0.03 4.94 16 6 C -0.51 -14.34 9.32 -34.44 -0.32 -14.66 16 7 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C -0.06 -0.87 4.72 -104.56 -0.49 -1.37 16 15 C -0.10 -1.35 8.98 -39.63 -0.36 -1.71 16 16 C -0.10 -1.20 9.45 -39.25 -0.37 -1.57 16 17 C -0.08 -0.88 5.88 -104.90 -0.62 -1.50 16 18 C 0.01 0.15 5.91 -104.59 -0.62 -0.47 16 19 C -0.17 -1.61 9.50 -39.11 -0.37 -1.98 16 20 C 0.10 0.94 11.17 -17.61 -0.20 0.74 16 21 N -0.49 -5.36 10.35 -13.34 -0.14 -5.49 16 22 C 0.10 0.95 11.17 -17.60 -0.20 0.76 16 23 C -0.17 -1.63 9.50 -39.10 -0.37 -2.00 16 24 C -0.10 -1.16 9.45 -39.25 -0.37 -1.53 16 25 C -0.12 -1.51 9.65 -39.63 -0.38 -1.89 16 26 H 0.06 1.09 7.45 -51.93 -0.39 0.71 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.33 6.65 7.97 -39.29 -0.31 6.34 16 30 H -0.01 -0.37 8.06 -51.93 -0.42 -0.79 16 31 H 0.03 0.82 7.44 -51.93 -0.39 0.44 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.14 1.96 7.70 -52.48 -0.40 1.55 16 34 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 35 H 0.14 1.00 6.34 -52.48 -0.33 0.67 16 36 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.14 1.06 6.34 -52.49 -0.33 0.73 16 39 H 0.12 1.09 6.30 -52.49 -0.33 0.76 16 40 H 0.12 1.42 8.03 -52.48 -0.42 1.00 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -31.10 335.88 -9.90 -41.00 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.29 Total: 4.17 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -4.63 Total: -20.72 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.02 Total: -46.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.10 -9.90 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411473000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.985 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds