Wall clock time and date at job start Tue Mar 31 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00023 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99532 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00003 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47381 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.47001 * 119.99934 * 10 8 6 13 13 H 1.48497 * 109.47392 * 239.99632 * 10 8 6 14 14 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 15 15 C 1.38327 * 119.87627 * 279.72277 * 14 2 1 16 16 C 1.38016 * 120.12254 * 179.76390 * 15 14 2 17 17 C 1.39352 * 119.87654 * 0.53617 * 16 15 14 18 18 C 1.48361 * 120.12374 * 179.69878 * 17 16 15 19 19 C 1.39770 * 120.90674 * 179.74228 * 18 17 16 20 20 C 1.37972 * 119.01955 * 179.73093 * 19 18 17 21 21 N 1.31926 * 120.88710 * 0.55693 * 20 19 18 22 22 C 1.31923 * 122.00105 * 359.71601 * 21 20 19 23 23 C 1.37987 * 120.88143 * 359.97438 * 22 21 20 24 24 C 1.39356 * 119.75386 * 359.71961 * 17 16 15 25 25 C 1.38013 * 119.87516 * 0.02562 * 24 17 16 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 28 28 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 29 29 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 30 30 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 31 31 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 32 32 H 0.97001 * 119.99132 * 180.02562 * 9 8 6 33 33 H 1.08004 * 119.93984 * 0.02562 * 15 14 2 34 34 H 1.07998 * 120.06219 * 180.23253 * 16 15 14 35 35 H 1.08003 * 120.48516 * 359.97438 * 19 18 17 36 36 H 1.08005 * 119.55892 * 180.27382 * 20 19 18 37 37 H 1.07999 * 119.55992 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.49049 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.06090 * 179.97438 * 24 17 16 40 40 H 1.08003 * 119.93798 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5885 -0.5214 3.5557 7 1 2.8381 -1.5694 3.4794 8 6 2.7319 0.1355 4.7595 9 7 2.4274 1.4116 4.8525 10 14 3.3584 -0.7870 6.2581 11 1 3.6269 -2.2010 5.8925 12 1 4.6118 -0.1535 6.7410 13 1 2.3343 -0.7399 7.3323 14 6 2.0323 -0.7104 -1.2304 15 6 2.0710 -2.0928 -1.2603 16 6 2.5255 -2.7488 -2.3864 17 6 2.9564 -2.0157 -3.4903 18 6 3.4523 -2.7151 -4.7011 19 6 3.8834 -1.9962 -5.8195 20 6 4.3424 -2.6862 -6.9226 21 7 4.3670 -4.0052 -6.9344 22 6 3.9641 -4.7211 -5.9022 23 6 3.4961 -4.1110 -4.7564 24 6 2.9202 -0.6231 -3.4527 25 6 2.4588 0.0223 -2.3234 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 2.9173 -1.1205 1.0288 30 1 2.7589 1.0462 2.1182 31 1 1.0871 0.6164 2.5525 32 1 2.5287 1.8737 5.6993 33 1 1.7409 -2.6600 -0.4025 34 1 2.5517 -3.8282 -2.4101 35 1 3.8613 -0.9164 -5.8187 36 1 4.6818 -2.1393 -7.7900 37 1 4.0010 -5.7992 -5.9547 38 1 3.1675 -4.7033 -3.9153 39 1 3.2533 -0.0500 -4.3053 40 1 2.4307 1.1015 -2.2929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411473000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:39 Heat of formation + Delta-G solvation = 34.192771 kcal Electronic energy + Delta-G solvation = -20322.347755 eV Core-core repulsion = 17293.472175 eV Total energy + Delta-G solvation = -3028.875580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.31770 -40.18519 -37.62919 -35.18171 -34.07860 -32.55913 -31.86768 -31.59031 -29.60940 -28.12442 -25.52076 -24.95313 -23.96270 -23.06909 -22.41207 -21.12968 -18.87304 -18.40300 -17.27586 -17.09770 -16.80201 -16.52145 -16.13049 -15.53620 -15.34777 -15.02121 -14.86838 -14.81139 -14.70248 -14.24912 -13.99384 -13.82353 -13.54696 -13.16421 -13.06190 -12.85354 -12.77499 -12.61348 -12.36766 -12.10576 -11.72428 -11.61937 -11.32437 -11.13704 -10.67511 -10.45473 -10.09796 -9.88636 -9.21943 -9.16715 -8.23590 -6.34363 -0.40721 0.22587 0.47379 0.92005 1.40630 1.41293 1.55087 2.39244 2.69245 3.08949 3.10187 3.43146 3.49334 3.61055 3.74746 3.78821 4.02571 4.12246 4.15232 4.21899 4.36569 4.46761 4.53401 4.63361 4.71668 4.83548 4.83957 4.88877 4.95339 5.07679 5.09996 5.15914 5.17938 5.24561 5.33374 5.46277 5.57831 5.64166 5.72315 5.77209 5.99765 6.03200 6.43655 6.69986 6.87642 7.04169 7.36596 8.88270 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028502 B = 0.002892 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.155181 B = 9679.113430 C =10179.664093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.116 3.884 3 H 0.032 0.968 4 N -0.677 5.677 5 C 0.211 3.789 6 C -0.534 4.534 7 H 0.065 0.935 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.972 3.028 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.278 1.278 14 C -0.079 4.079 15 C -0.108 4.108 16 C -0.102 4.102 17 C -0.071 4.071 18 C -0.006 4.006 19 C -0.171 4.171 20 C 0.093 3.907 21 N -0.517 5.517 22 C 0.093 3.907 23 C -0.173 4.173 24 C -0.100 4.100 25 C -0.122 4.122 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.334 0.666 30 H -0.042 1.042 31 H 0.004 0.996 32 H 0.265 0.735 33 H 0.129 0.871 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.180 0.820 37 H 0.178 0.822 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 -7.861 -22.260 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.006 3.994 3 H 0.050 0.950 4 N -0.308 5.308 5 C 0.083 3.917 6 C -0.572 4.572 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.797 3.203 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.204 1.204 14 C -0.080 4.080 15 C -0.126 4.126 16 C -0.120 4.120 17 C -0.071 4.071 18 C -0.014 4.014 19 C -0.191 4.191 20 C -0.063 4.063 21 N -0.227 5.227 22 C -0.063 4.063 23 C -0.192 4.192 24 C -0.118 4.118 25 C -0.140 4.140 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.151 0.849 30 H -0.024 1.024 31 H 0.022 0.978 32 H 0.074 0.926 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.197 0.803 37 H 0.195 0.805 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.119 -8.400 -22.723 24.251 hybrid contribution 0.582 1.098 1.758 2.153 sum 1.701 -7.302 -20.965 22.265 Atomic orbital electron populations 1.21683 0.93341 1.02201 1.00988 1.20512 0.96562 0.94689 0.87655 0.95037 1.60720 1.32634 1.33705 1.03691 1.19229 0.94091 0.89937 0.88462 1.21572 1.43488 0.97044 0.95093 0.91728 1.25949 0.95638 0.95764 1.02385 1.70099 1.49765 1.10693 1.26898 0.85289 0.77842 0.78904 0.78289 1.18597 1.20378 1.20395 1.20117 0.98309 0.94538 0.94994 1.21076 0.99251 0.93783 0.98486 1.21427 0.97708 1.00853 0.92026 1.18810 1.01402 0.93489 0.93384 1.19335 0.95281 0.93788 0.93016 1.22481 1.00439 1.02596 0.93545 1.23115 0.94972 0.89938 0.98282 1.67679 1.16088 1.09013 1.29917 1.23093 0.93500 1.01490 0.88203 1.22487 1.01564 0.94375 1.00812 1.21390 0.98585 0.93416 0.98400 1.21165 0.99300 1.00609 0.92946 0.94288 0.90932 0.92042 0.84899 1.02428 0.97801 0.92629 0.85337 0.83720 0.82647 0.80344 0.80478 0.82946 0.83249 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 9.39 71.98 0.68 -3.36 16 2 C 0.12 4.06 2.81 44.17 0.12 4.19 16 3 H 0.03 1.19 7.65 -2.38 -0.02 1.17 16 4 N -0.68 -28.81 5.67 -499.46 -2.83 -31.64 16 5 C 0.21 11.27 5.24 85.56 0.45 11.72 16 6 C -0.53 -30.43 9.32 25.60 0.24 -30.19 16 7 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 8 C 0.00 0.04 5.46 84.66 0.46 0.51 16 9 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 10 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 11 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 14 C -0.08 -2.28 4.72 -19.82 -0.09 -2.37 16 15 C -0.11 -2.89 8.98 22.24 0.20 -2.69 16 16 C -0.10 -2.27 9.45 22.49 0.21 -2.05 16 17 C -0.07 -1.50 5.88 -20.04 -0.12 -1.61 16 18 C -0.01 -0.12 5.91 -19.84 -0.12 -0.23 16 19 C -0.17 -2.74 9.50 22.58 0.21 -2.53 16 20 C 0.09 1.50 11.17 84.62 0.95 2.44 16 21 N -0.52 -10.11 10.35 -196.12 -2.03 -12.14 16 22 C 0.09 1.55 11.17 84.62 0.95 2.50 16 23 C -0.17 -2.91 9.50 22.58 0.21 -2.69 16 24 C -0.10 -2.05 9.45 22.49 0.21 -1.84 16 25 C -0.12 -2.96 9.65 22.24 0.21 -2.75 16 26 H 0.04 1.42 7.45 -2.38 -0.02 1.40 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.33 13.79 7.97 -89.69 -0.71 13.08 16 30 H -0.04 -2.43 8.06 -2.39 -0.02 -2.45 16 31 H 0.00 0.23 7.44 -2.39 -0.02 0.21 16 32 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.13 3.65 7.70 -2.91 -0.02 3.62 16 34 H 0.15 2.49 6.30 -2.91 -0.02 2.47 16 35 H 0.16 1.75 6.34 -2.91 -0.02 1.74 16 36 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.15 1.97 6.34 -2.91 -0.02 1.95 16 39 H 0.15 2.17 6.30 -2.91 -0.02 2.16 16 40 H 0.13 2.91 8.03 -2.91 -0.02 2.88 16 Total: -1.00 -67.67 335.88 2.57 -65.10 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.33 Total: 19.60 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 4.78 Total: -30.97 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -4.58 Total: -100.01 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -67.67 2.57 -65.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411473000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.297 kcal (2) G-P(sol) polarization free energy of solvation -67.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds