Wall clock time and date at job start Tue Mar 31 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47035 * 2 1 4 4 N 1.46894 * 109.47474 * 239.99577 * 2 1 3 5 5 C 1.46900 * 110.99909 * 84.99910 * 4 2 1 6 6 C 1.50701 * 109.47372 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99753 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00056 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00177 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99896 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46914 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46998 * 120.00123 * 10 8 6 13 13 H 1.48506 * 109.47096 * 240.00159 * 10 8 6 14 14 C 1.50701 * 109.47068 * 119.99372 * 2 1 3 15 15 C 1.38325 * 119.88193 * 259.99978 * 14 2 1 16 16 C 1.38015 * 120.12488 * 179.97438 * 15 14 2 17 17 C 1.39346 * 119.87307 * 0.02713 * 16 15 14 18 18 C 1.48378 * 120.12017 * 179.97438 * 17 16 15 19 19 C 1.39759 * 120.90567 * 179.97438 * 18 17 16 20 20 C 1.37981 * 119.02234 * 180.02562 * 19 18 17 21 21 N 1.31923 * 120.87610 * 0.26516 * 20 19 18 22 22 C 1.31925 * 122.01006 * 359.46510 * 21 20 19 23 23 C 1.37984 * 120.87640 * 0.53183 * 22 21 20 24 24 C 1.39345 * 119.76023 * 0.27215 * 17 16 15 25 25 C 1.38020 * 119.87635 * 359.42704 * 24 17 16 26 26 H 1.08998 * 109.47253 * 300.00167 * 1 2 3 27 27 H 1.09000 * 109.47037 * 60.00392 * 1 2 3 28 28 H 1.08995 * 109.46869 * 180.02562 * 1 2 3 29 29 H 1.00900 * 111.00271 * 208.95296 * 4 2 1 30 30 H 1.09000 * 109.47338 * 300.00442 * 5 4 2 31 31 H 1.08995 * 109.47430 * 59.99874 * 5 4 2 32 32 H 0.97006 * 119.99922 * 180.02562 * 9 8 6 33 33 H 1.08000 * 119.93277 * 359.97438 * 15 14 2 34 34 H 1.07997 * 120.05875 * 179.97438 * 16 15 14 35 35 H 1.08008 * 120.49317 * 0.05046 * 19 18 17 36 36 H 1.08002 * 119.55839 * 179.97438 * 20 19 18 37 37 H 1.07995 * 119.56488 * 180.25237 * 22 21 20 38 38 H 1.07996 * 120.48783 * 179.72085 * 23 22 21 39 39 H 1.08006 * 120.06634 * 179.72780 * 24 17 16 40 40 H 1.08000 * 119.94293 * 180.29557 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0198 -0.6925 -1.1993 5 6 2.0826 0.2225 -2.3468 6 6 2.5875 -0.5219 -3.5559 7 1 2.8365 -1.5701 -3.4796 8 6 2.7307 0.1348 -4.7597 9 7 2.4271 1.4110 -4.8527 10 14 3.3559 -0.7881 -6.2586 11 1 3.6237 -2.2023 -5.8930 12 1 2.3311 -0.7404 -7.3323 13 1 4.6094 -0.1555 -6.7422 14 6 2.0324 -0.7103 1.2305 15 6 2.4584 0.0226 2.3236 16 6 2.9189 -0.6228 3.4533 17 6 2.9547 -2.0152 3.4913 18 6 3.4492 -2.7147 4.7028 19 6 3.4917 -4.1105 4.7588 20 6 3.9583 -4.7206 5.9051 21 7 4.3555 -4.0045 6.9394 22 6 4.3363 -2.6855 6.9255 23 6 3.8846 -1.9955 5.8193 24 6 2.5301 -2.7484 2.3850 25 6 2.0657 -2.0928 1.2627 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.9174 -1.1205 -1.0286 30 1 1.0872 0.6162 -2.5525 31 1 2.7589 1.0461 -2.1182 32 1 2.5274 1.8729 -5.6998 33 1 2.4307 1.1018 2.2928 34 1 3.2517 -0.0495 4.3060 35 1 3.1645 -4.7030 3.9171 36 1 3.9944 -5.7987 5.9579 37 1 4.6745 -2.1385 7.7931 38 1 3.8675 -0.9156 5.8164 39 1 2.5598 -3.8278 2.4073 40 1 1.7319 -2.6601 0.4065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411473004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:45 Heat of formation + Delta-G solvation = 51.984796 kcal Electronic energy + Delta-G solvation = -20321.373764 eV Core-core repulsion = 17293.269704 eV Total energy + Delta-G solvation = -3028.104060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.53399 -39.20789 -36.21019 -33.66711 -32.56042 -31.79363 -30.76572 -30.33584 -28.49057 -26.19258 -24.46168 -24.14665 -22.37051 -22.12790 -21.19529 -19.86995 -17.82075 -16.71560 -16.44011 -16.14775 -15.42227 -15.09599 -14.69332 -14.55511 -14.22156 -14.08447 -14.06093 -13.56508 -13.44626 -13.09858 -12.58216 -12.40853 -12.12560 -12.03338 -11.63903 -11.51737 -11.28222 -10.91804 -10.88350 -10.60391 -10.36118 -10.31339 -9.89891 -9.73801 -9.42518 -9.20396 -8.93052 -8.52238 -8.26321 -7.39255 -6.06753 -4.08663 0.44088 0.90051 1.43124 1.81499 3.28747 3.36156 3.40992 3.52600 3.94303 4.20472 4.27924 4.39970 4.46547 4.75784 4.83485 4.90565 4.91815 5.01368 5.17711 5.29708 5.34078 5.49545 5.51340 5.54380 5.61296 5.73504 5.87982 5.95566 5.99214 6.07295 6.21558 6.32493 6.41767 6.48185 6.53759 6.64846 6.75298 6.98015 7.21931 7.36819 7.73175 7.74966 8.08522 8.33072 8.54670 9.00639 9.56483 11.04407 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.028537 B = 0.002891 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.955074 B = 9681.982003 C =10181.597681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.115 3.885 3 H 0.045 0.955 4 N -0.682 5.682 5 C 0.194 3.806 6 C -0.514 4.514 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C -0.060 4.060 15 C -0.118 4.118 16 C -0.101 4.101 17 C -0.075 4.075 18 C 0.014 3.986 19 C -0.170 4.170 20 C 0.101 3.899 21 N -0.495 5.495 22 C 0.101 3.899 23 C -0.172 4.172 24 C -0.101 4.101 25 C -0.099 4.099 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.331 0.669 30 H 0.030 0.970 31 H -0.014 1.014 32 H 0.261 0.739 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 -6.577 20.853 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.005 3.995 3 H 0.063 0.937 4 N -0.313 5.313 5 C 0.067 3.933 6 C -0.552 4.552 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.726 3.274 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.061 4.061 15 C -0.136 4.136 16 C -0.120 4.120 17 C -0.075 4.075 18 C 0.006 3.994 19 C -0.190 4.190 20 C -0.055 4.055 21 N -0.204 5.204 22 C -0.056 4.056 23 C -0.191 4.191 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.048 0.952 31 H 0.004 0.996 32 H 0.071 0.929 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.156 0.844 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.386 -7.105 21.296 22.453 hybrid contribution 0.806 0.718 -1.478 1.829 sum 1.192 -6.387 19.818 20.856 Atomic orbital electron populations 1.21736 0.94124 1.02048 1.00904 1.20511 0.95928 0.95337 0.87736 0.93736 1.60843 1.32552 1.34594 1.03324 1.19613 0.96601 0.90196 0.86853 1.21207 1.43285 0.96762 0.93968 0.91909 1.24987 0.95645 0.94902 0.99048 1.69968 1.48885 1.09028 1.25838 0.86434 0.78373 0.79975 0.82584 1.19638 1.20981 1.21091 1.20375 0.96057 0.94146 0.95501 1.21036 0.99548 1.00045 0.93020 1.21106 0.99474 0.93200 0.98179 1.18600 1.02598 0.93217 0.93121 1.19235 0.94029 0.93140 0.92964 1.22265 1.02019 0.94493 1.00234 1.22687 0.93982 1.00318 0.88520 1.67635 1.15448 1.08113 1.29216 1.22674 0.95366 0.90143 0.97392 1.22239 1.01282 1.01535 0.94082 1.21233 0.98315 0.99686 0.92672 1.21132 0.98384 0.94154 0.98004 0.93557 0.91918 0.92286 0.85215 0.95195 0.99574 0.92942 0.85794 0.85969 0.84441 0.82683 0.82744 0.84586 0.85818 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.39 37.16 0.35 -1.72 16 2 C 0.12 1.97 2.81 -68.86 -0.19 1.77 16 3 H 0.04 0.80 7.65 -51.93 -0.40 0.41 16 4 N -0.68 -14.04 5.67 -109.22 -0.62 -14.66 16 5 C 0.19 4.96 5.24 -4.98 -0.03 4.94 16 6 C -0.51 -14.34 9.32 -34.44 -0.32 -14.66 16 7 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C -0.06 -0.87 4.72 -104.56 -0.49 -1.37 16 15 C -0.12 -1.51 9.65 -39.63 -0.38 -1.89 16 16 C -0.10 -1.16 9.45 -39.25 -0.37 -1.53 16 17 C -0.08 -0.88 5.88 -104.90 -0.62 -1.49 16 18 C 0.01 0.15 5.91 -104.58 -0.62 -0.47 16 19 C -0.17 -1.63 9.50 -39.11 -0.37 -2.00 16 20 C 0.10 0.95 11.17 -17.61 -0.20 0.76 16 21 N -0.49 -5.36 10.35 -13.34 -0.14 -5.49 16 22 C 0.10 0.94 11.17 -17.60 -0.20 0.74 16 23 C -0.17 -1.61 9.50 -39.10 -0.37 -1.98 16 24 C -0.10 -1.20 9.45 -39.25 -0.37 -1.57 16 25 C -0.10 -1.35 8.99 -39.63 -0.36 -1.71 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.09 7.45 -51.93 -0.39 0.71 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.33 6.65 7.98 -39.29 -0.31 6.34 16 30 H 0.03 0.82 7.44 -51.93 -0.39 0.44 16 31 H -0.01 -0.37 8.05 -51.93 -0.42 -0.79 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.12 1.42 8.03 -52.49 -0.42 1.00 16 34 H 0.12 1.09 6.30 -52.49 -0.33 0.76 16 35 H 0.14 1.06 6.34 -52.48 -0.33 0.73 16 36 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.14 1.00 6.34 -52.49 -0.33 0.67 16 39 H 0.12 1.20 6.30 -52.48 -0.33 0.87 16 40 H 0.14 1.95 7.71 -52.49 -0.40 1.55 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -31.10 335.90 -9.91 -41.00 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.29 Total: 4.17 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -4.63 Total: -20.71 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.02 Total: -46.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.10 -9.91 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411473004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.986 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds