Wall clock time and date at job start Tue Mar 31 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29027 * 124.91918 * 2 1 4 4 C 1.31776 * 117.12568 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.74838 * 180.02562 * 4 3 2 6 6 C 1.33635 * 114.50289 * 0.02562 * 4 3 2 7 7 C 1.50699 * 126.03805 * 179.97438 * 6 4 3 8 8 H 1.08991 * 109.47598 * 345.01838 * 7 6 4 9 9 C 1.53007 * 109.46946 * 105.01760 * 7 6 4 10 10 N 1.46902 * 109.47238 * 225.01200 * 7 6 4 11 11 C 1.46898 * 110.99824 * 154.99757 * 10 7 6 12 12 C 1.53007 * 109.47113 * 180.02562 * 11 10 7 13 13 C 1.53005 * 109.46985 * 300.00486 * 12 11 10 14 14 C 1.53004 * 109.46980 * 60.00091 * 12 11 10 15 15 C 1.50698 * 109.47074 * 180.02562 * 12 11 10 16 16 H 1.07996 * 120.00312 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99548 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00734 * 0.02562 * 17 15 12 19 19 Si 1.86808 * 119.99781 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47042 * 89.99991 * 19 17 15 21 21 H 1.48501 * 109.47132 * 210.00332 * 19 17 15 22 22 H 1.48500 * 109.46819 * 330.00128 * 19 17 15 23 23 S 1.70977 * 124.91502 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47170 * 269.95235 * 1 2 3 25 25 H 1.09004 * 109.47224 * 29.95207 * 1 2 3 26 26 H 1.09002 * 109.47569 * 149.95396 * 1 2 3 27 27 H 1.09001 * 109.47671 * 270.00063 * 5 4 3 28 28 H 1.09003 * 109.47133 * 30.00257 * 5 4 3 29 29 H 1.08999 * 109.47079 * 150.00052 * 5 4 3 30 30 H 1.09003 * 109.46905 * 60.00069 * 9 7 6 31 31 H 1.09001 * 109.46624 * 179.97438 * 9 7 6 32 32 H 1.08990 * 109.47126 * 299.99965 * 9 7 6 33 33 H 1.00897 * 111.00689 * 278.96083 * 10 7 6 34 34 H 1.08996 * 109.47807 * 300.00512 * 11 10 7 35 35 H 1.08998 * 109.47114 * 60.01036 * 11 10 7 36 36 H 1.09001 * 109.47164 * 59.99965 * 13 12 11 37 37 H 1.08999 * 109.46911 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.47072 * 300.00250 * 13 12 11 39 39 H 1.08992 * 109.46609 * 60.00312 * 14 12 11 40 40 H 1.08993 * 109.46754 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.46812 * 299.99875 * 14 12 11 42 42 H 0.96992 * 120.01040 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0245 0.0000 6 6 3.9354 -0.4006 -0.0015 7 6 5.3574 -0.8994 -0.0029 8 1 6.0287 -0.0829 -0.2685 9 6 5.7160 -1.4218 1.3899 10 7 5.4947 -1.9849 -0.9831 11 6 6.8822 -2.0984 -1.4520 12 6 6.9853 -3.2364 -2.4696 13 6 6.5605 -4.5501 -1.8103 14 6 6.0678 -2.9423 -3.6582 15 6 8.4088 -3.3532 -2.9501 16 1 9.1646 -2.6832 -2.5676 17 6 8.7466 -4.3162 -3.8772 18 7 7.8264 -5.1325 -4.3426 19 14 10.5113 -4.4615 -4.4723 20 1 11.2541 -5.4009 -3.5941 21 1 10.5231 -4.9730 -5.8664 22 1 11.1597 -3.1262 -4.4295 23 16 2.4856 -1.4020 -0.0006 24 1 -0.3633 -0.0009 1.0277 25 1 -0.3634 0.8904 -0.5131 26 1 -0.3634 -0.8896 -0.5145 27 1 4.7666 2.3014 -1.0275 28 1 4.0907 2.8787 0.5146 29 1 5.4433 1.7217 0.5133 30 1 5.0447 -2.2384 1.6555 31 1 6.7444 -1.7829 1.3887 32 1 5.6141 -0.6165 2.1172 33 1 5.1692 -2.8603 -0.6014 34 1 7.1848 -1.1627 -1.9220 35 1 7.5359 -2.3076 -0.6052 36 1 5.5309 -4.4658 -1.4625 37 1 6.6335 -5.3607 -2.5354 38 1 7.2141 -4.7596 -0.9635 39 1 6.3704 -2.0064 -4.1278 40 1 6.1409 -3.7531 -4.3828 41 1 5.0383 -2.8581 -3.3102 42 1 8.0640 -5.8102 -4.9945 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414162199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:37 Heat of formation + Delta-G solvation = 26.595826 kcal Electronic energy + Delta-G solvation = -20421.849938 eV Core-core repulsion = 17528.088881 eV Total energy + Delta-G solvation = -2893.761057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.86294 -37.46268 -35.09209 -32.78551 -31.35856 -29.34504 -28.81954 -27.01965 -25.58245 -25.23614 -24.03415 -22.77069 -21.62842 -19.00826 -18.34347 -17.53905 -16.00704 -15.46919 -15.12031 -14.75323 -14.34739 -14.24835 -13.69238 -13.36094 -13.25293 -12.91202 -12.79457 -12.68771 -12.43045 -12.27365 -12.04057 -11.88315 -11.76106 -11.27674 -11.15335 -11.08138 -10.80080 -10.66188 -10.60371 -10.20339 -10.06990 -9.52833 -9.40886 -9.18447 -8.98927 -8.65059 -8.41651 -8.29870 -7.79043 -5.92173 -4.02770 0.86097 1.50304 1.95499 2.88008 3.30354 3.37709 3.40500 4.13674 4.41840 4.66943 4.96575 5.01954 5.15932 5.27711 5.32073 5.33400 5.35672 5.38709 5.63886 5.68664 5.77029 5.83785 5.91617 6.01381 6.14520 6.28809 6.35666 6.40733 6.69026 6.86559 7.04831 7.14625 7.36650 7.44134 7.66079 7.74404 7.81169 7.86811 7.88035 8.19126 8.32819 8.54018 8.98484 9.62356 11.08330 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028602 B = 0.003988 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.720920 B = 7019.571621 C = 7340.060311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.022 3.978 3 N -0.471 5.471 4 C 0.049 3.951 5 C -0.075 4.075 6 C -0.184 4.184 7 C 0.154 3.846 8 H 0.095 0.905 9 C -0.177 4.177 10 N -0.678 5.678 11 C 0.076 3.924 12 C 0.069 3.931 13 C -0.132 4.132 14 C -0.119 4.119 15 C -0.507 4.507 16 H 0.052 0.948 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.888 3.112 20 H -0.283 1.283 21 H -0.287 1.287 22 H -0.276 1.276 23 S 0.140 5.860 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.339 0.661 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.009 0.991 37 H 0.083 0.917 38 H 0.019 0.981 39 H 0.017 0.983 40 H 0.074 0.926 41 H 0.019 0.981 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.905 8.234 10.562 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.255 4.255 3 N -0.187 5.187 4 C -0.082 4.082 5 C -0.134 4.134 6 C -0.305 4.305 7 C 0.041 3.959 8 H 0.113 0.887 9 C -0.237 4.237 10 N -0.310 5.310 11 C -0.052 4.052 12 C 0.069 3.931 13 C -0.190 4.190 14 C -0.176 4.176 15 C -0.546 4.546 16 H 0.070 0.930 17 C -0.135 4.135 18 N -0.523 5.523 19 Si 0.716 3.284 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.201 1.201 23 S 0.396 5.604 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.028 0.972 37 H 0.102 0.898 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.616 7.887 9.881 17.169 hybrid contribution 2.011 0.177 0.383 2.055 sum -9.605 8.065 10.264 16.206 Atomic orbital electron populations 1.20358 0.85624 1.03932 1.03374 1.26835 1.01497 0.91787 1.05420 1.66077 1.04445 1.31934 1.16229 1.20031 0.90109 0.93957 1.04152 1.20311 0.95738 0.94502 1.02894 1.25804 0.99602 0.95347 1.09797 1.19920 0.88614 0.96271 0.91142 0.88678 1.22528 1.02300 1.01427 0.97424 1.60729 1.24684 1.07603 1.37973 1.22205 0.84780 1.00885 0.97312 1.18096 0.94975 0.89229 0.90842 1.21835 0.95112 1.02371 0.99643 1.21632 0.95936 1.00118 0.99951 1.21089 0.93521 1.16257 1.23700 0.92993 1.24877 0.96816 0.95676 0.96142 1.69825 1.32150 1.19632 1.30668 0.86666 0.85496 0.78195 0.78012 1.20880 1.21299 1.20061 1.83939 0.97167 1.11695 1.67635 0.90089 0.89682 0.90284 0.90752 0.91062 0.90941 0.92468 0.91500 0.92273 0.84135 0.92384 0.96496 0.97165 0.89783 0.96204 0.96331 0.90745 0.96163 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.46 36.01 0.38 -0.27 16 2 C 0.02 0.29 7.39 -13.46 -0.10 0.19 16 3 N -0.47 -7.00 10.53 -8.06 -0.08 -7.09 16 4 C 0.05 0.72 6.74 -84.23 -0.57 0.15 16 5 C -0.08 -0.88 9.81 36.00 0.35 -0.53 16 6 C -0.18 -2.68 5.47 -35.92 -0.20 -2.87 16 7 C 0.15 2.24 2.75 -68.86 -0.19 2.05 16 8 H 0.10 1.38 6.43 -51.93 -0.33 1.04 16 9 C -0.18 -2.26 9.14 37.16 0.34 -1.92 16 10 N -0.68 -11.83 5.35 -107.95 -0.58 -12.41 16 11 C 0.08 1.54 4.38 -3.82 -0.02 1.52 16 12 C 0.07 1.64 0.57 -155.65 -0.09 1.56 16 13 C -0.13 -3.06 7.92 37.16 0.29 -2.77 16 14 C -0.12 -2.89 8.09 37.16 0.30 -2.59 16 15 C -0.51 -13.46 8.01 -34.44 -0.28 -13.74 16 16 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 17 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 18 N -0.88 -24.31 9.35 55.43 0.52 -23.79 16 19 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 S 0.14 1.86 23.07 -107.50 -2.48 -0.62 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.75 7.03 -51.93 -0.37 0.39 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 31 H 0.07 0.87 7.45 -51.93 -0.39 0.49 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.34 5.90 6.51 -39.29 -0.26 5.65 16 34 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 35 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 36 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 37 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 41 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 42 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -28.61 343.61 -9.19 -37.79 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.86 Total: 2.53 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 0.14 Total: -17.54 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -0.14 Total: -43.28 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.48 Total: -0.62 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.61 -9.19 -37.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414162199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.391 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds