Wall clock time and date at job start Tue Mar 31 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29027 * 124.91918 * 2 1 4 4 C 1.31776 * 117.12568 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.74838 * 180.02562 * 4 3 2 6 6 C 1.33635 * 114.50289 * 0.02562 * 4 3 2 7 7 C 1.50699 * 126.03805 * 179.97438 * 6 4 3 8 8 H 1.08991 * 109.47598 * 345.01838 * 7 6 4 9 9 C 1.53007 * 109.46946 * 105.01760 * 7 6 4 10 10 N 1.46902 * 109.47238 * 225.01200 * 7 6 4 11 11 C 1.46898 * 110.99824 * 154.99757 * 10 7 6 12 12 C 1.53007 * 109.47113 * 180.02562 * 11 10 7 13 13 C 1.53005 * 109.46985 * 300.00486 * 12 11 10 14 14 C 1.53004 * 109.46980 * 60.00091 * 12 11 10 15 15 C 1.50698 * 109.47074 * 180.02562 * 12 11 10 16 16 H 1.07996 * 120.00312 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99548 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00734 * 0.02562 * 17 15 12 19 19 Si 1.86808 * 119.99781 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47042 * 89.99991 * 19 17 15 21 21 H 1.48501 * 109.47132 * 210.00332 * 19 17 15 22 22 H 1.48500 * 109.46819 * 330.00128 * 19 17 15 23 23 S 1.70977 * 124.91502 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47170 * 269.95235 * 1 2 3 25 25 H 1.09004 * 109.47224 * 29.95207 * 1 2 3 26 26 H 1.09002 * 109.47569 * 149.95396 * 1 2 3 27 27 H 1.09001 * 109.47671 * 270.00063 * 5 4 3 28 28 H 1.09003 * 109.47133 * 30.00257 * 5 4 3 29 29 H 1.08999 * 109.47079 * 150.00052 * 5 4 3 30 30 H 1.09003 * 109.46905 * 60.00069 * 9 7 6 31 31 H 1.09001 * 109.46624 * 179.97438 * 9 7 6 32 32 H 1.08990 * 109.47126 * 299.99965 * 9 7 6 33 33 H 1.00897 * 111.00689 * 278.96083 * 10 7 6 34 34 H 1.08996 * 109.47807 * 300.00512 * 11 10 7 35 35 H 1.08998 * 109.47114 * 60.01036 * 11 10 7 36 36 H 1.09001 * 109.47164 * 59.99965 * 13 12 11 37 37 H 1.08999 * 109.46911 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.47072 * 300.00250 * 13 12 11 39 39 H 1.08992 * 109.46609 * 60.00312 * 14 12 11 40 40 H 1.08993 * 109.46754 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.46812 * 299.99875 * 14 12 11 42 42 H 0.96992 * 120.01040 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0245 0.0000 6 6 3.9354 -0.4006 -0.0015 7 6 5.3574 -0.8994 -0.0029 8 1 6.0287 -0.0829 -0.2685 9 6 5.7160 -1.4218 1.3899 10 7 5.4947 -1.9849 -0.9831 11 6 6.8822 -2.0984 -1.4520 12 6 6.9853 -3.2364 -2.4696 13 6 6.5605 -4.5501 -1.8103 14 6 6.0678 -2.9423 -3.6582 15 6 8.4088 -3.3532 -2.9501 16 1 9.1646 -2.6832 -2.5676 17 6 8.7466 -4.3162 -3.8772 18 7 7.8264 -5.1325 -4.3426 19 14 10.5113 -4.4615 -4.4723 20 1 11.2541 -5.4009 -3.5941 21 1 10.5231 -4.9730 -5.8664 22 1 11.1597 -3.1262 -4.4295 23 16 2.4856 -1.4020 -0.0006 24 1 -0.3633 -0.0009 1.0277 25 1 -0.3634 0.8904 -0.5131 26 1 -0.3634 -0.8896 -0.5145 27 1 4.7666 2.3014 -1.0275 28 1 4.0907 2.8787 0.5146 29 1 5.4433 1.7217 0.5133 30 1 5.0447 -2.2384 1.6555 31 1 6.7444 -1.7829 1.3887 32 1 5.6141 -0.6165 2.1172 33 1 5.1692 -2.8603 -0.6014 34 1 7.1848 -1.1627 -1.9220 35 1 7.5359 -2.3076 -0.6052 36 1 5.5309 -4.4658 -1.4625 37 1 6.6335 -5.3607 -2.5354 38 1 7.2141 -4.7596 -0.9635 39 1 6.3704 -2.0064 -4.1278 40 1 6.1409 -3.7531 -4.3828 41 1 5.0383 -2.8581 -3.3102 42 1 8.0640 -5.8102 -4.9945 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414162199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:36 Heat of formation + Delta-G solvation = 10.578059 kcal Electronic energy + Delta-G solvation = -20422.544521 eV Core-core repulsion = 17528.088881 eV Total energy + Delta-G solvation = -2894.455640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90470 -38.97673 -36.65448 -34.04886 -32.97708 -30.46828 -29.96093 -28.03671 -27.50157 -27.24159 -25.64337 -23.73340 -22.80631 -20.53605 -19.72518 -18.61532 -17.86665 -16.98150 -16.32875 -16.13784 -15.70691 -15.66990 -14.83608 -14.57732 -14.39482 -14.17602 -14.08191 -13.98838 -13.72367 -13.37554 -13.18274 -13.12675 -13.01585 -12.84123 -12.73287 -12.53066 -12.47247 -12.26797 -12.13781 -12.05082 -11.87560 -11.32147 -11.00242 -10.60423 -10.53445 -10.33410 -10.09527 -9.47118 -9.17072 -7.95532 -6.12311 -0.16961 0.49409 0.91913 1.42687 1.45348 1.53259 1.83512 2.47229 3.21215 3.26894 3.38646 3.85178 4.08106 4.12119 4.28495 4.41545 4.55079 4.59569 4.62091 4.68696 4.74262 4.78790 4.81092 4.87194 4.91504 5.00751 5.06304 5.12540 5.16878 5.18499 5.29446 5.41685 5.42840 5.54602 5.71295 5.77474 6.13603 6.23250 6.33883 6.47752 6.59007 6.84873 6.97119 7.55374 9.02590 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028602 B = 0.003988 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.720920 B = 7019.571621 C = 7340.060311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.027 3.973 3 N -0.498 5.498 4 C 0.041 3.959 5 C -0.075 4.075 6 C -0.206 4.206 7 C 0.157 3.843 8 H 0.096 0.904 9 C -0.170 4.170 10 N -0.682 5.682 11 C 0.093 3.907 12 C 0.060 3.940 13 C -0.120 4.120 14 C -0.104 4.104 15 C -0.524 4.524 16 H 0.047 0.953 17 C 0.023 3.977 18 N -0.903 5.903 19 Si 0.943 3.057 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.273 1.273 23 S 0.140 5.860 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.339 0.661 34 H 0.050 0.950 35 H 0.019 0.981 36 H 0.031 0.969 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.008 0.992 40 H 0.047 0.953 41 H 0.030 0.970 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.474 8.866 11.605 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.251 4.251 3 N -0.214 5.214 4 C -0.090 4.090 5 C -0.134 4.134 6 C -0.327 4.327 7 C 0.045 3.955 8 H 0.113 0.887 9 C -0.229 4.229 10 N -0.314 5.314 11 C -0.036 4.036 12 C 0.059 3.941 13 C -0.178 4.178 14 C -0.162 4.162 15 C -0.563 4.563 16 H 0.065 0.935 17 C -0.176 4.176 18 N -0.543 5.543 19 Si 0.770 3.230 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.198 1.198 23 S 0.396 5.604 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.186 8.526 10.936 18.460 hybrid contribution 2.089 0.010 0.065 2.090 sum -10.097 8.536 11.001 17.200 Atomic orbital electron populations 1.20566 0.82924 1.04989 1.04967 1.27560 1.03094 0.91142 1.03258 1.66169 1.04763 1.32707 1.17780 1.20433 0.90566 0.94643 1.03403 1.20382 0.95814 0.94127 1.03105 1.25773 0.99761 0.95733 1.11476 1.19899 0.89028 0.95195 0.91390 0.88659 1.22440 1.01952 1.01947 0.96575 1.60613 1.22758 1.08379 1.39650 1.21837 0.86492 0.98879 0.96391 1.18146 0.93500 0.90862 0.91569 1.21652 0.96432 1.00994 0.98675 1.21457 0.96746 0.98400 0.99590 1.21424 0.94889 1.16113 1.23898 0.93507 1.25521 1.00016 0.95612 0.96475 1.69961 1.33491 1.19903 1.30899 0.85796 0.81693 0.78122 0.77386 1.20484 1.21313 1.19759 1.83878 0.96943 1.11869 1.67713 0.88103 0.89186 0.88606 0.90870 0.90236 0.89701 0.92302 0.91883 0.90676 0.84117 0.93145 0.96268 0.95030 0.92658 0.96188 0.97289 0.93378 0.95065 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.46 71.24 0.75 -0.40 16 2 C 0.03 0.65 7.39 88.52 0.65 1.31 16 3 N -0.50 -14.08 10.53 -179.41 -1.89 -15.97 16 4 C 0.04 1.14 6.74 41.52 0.28 1.42 16 5 C -0.08 -1.66 9.81 71.24 0.70 -0.97 16 6 C -0.21 -5.71 5.47 24.64 0.13 -5.58 16 7 C 0.16 4.37 2.75 44.17 0.12 4.49 16 8 H 0.10 2.63 6.43 -2.39 -0.02 2.61 16 9 C -0.17 -4.01 9.14 71.98 0.66 -3.35 16 10 N -0.68 -22.99 5.35 -495.44 -2.65 -25.64 16 11 C 0.09 3.67 4.38 86.31 0.38 4.04 16 12 C 0.06 2.83 0.57 -52.92 -0.03 2.80 16 13 C -0.12 -5.51 7.92 71.98 0.57 -4.94 16 14 C -0.10 -5.09 8.09 71.98 0.58 -4.50 16 15 C -0.52 -27.86 8.01 25.60 0.21 -27.65 16 16 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 17 C 0.02 1.22 5.15 84.65 0.44 1.66 16 18 N -0.90 -50.16 9.35 21.45 0.20 -49.96 16 19 Si 0.94 43.00 29.54 68.60 2.03 45.03 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 S 0.14 3.51 23.07 -56.49 -1.30 2.21 16 24 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.63 7.03 -2.39 -0.02 1.61 16 30 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 31 H 0.06 1.53 7.45 -2.39 -0.02 1.52 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.34 11.32 6.51 -89.70 -0.58 10.74 16 34 H 0.05 2.06 8.05 -2.39 -0.02 2.04 16 35 H 0.02 0.74 7.44 -2.39 -0.02 0.73 16 36 H 0.03 1.27 6.57 -2.39 -0.02 1.26 16 37 H 0.05 2.88 6.07 -2.39 -0.01 2.86 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.05 2.59 6.07 -2.39 -0.01 2.58 16 41 H 0.03 1.40 7.60 -2.39 -0.02 1.38 16 42 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -60.17 343.61 2.24 -57.93 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.42 Total: 18.06 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 5.43 Total: -31.67 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -4.34 Total: -91.56 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.30 Total: 2.21 kcal Total: -60.17 2.24 -57.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414162199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.512 kcal (2) G-P(sol) polarization free energy of solvation -60.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds