Wall clock time and date at job start Tue Mar 31 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29025 * 124.91925 * 2 1 4 4 C 1.31777 * 117.12415 * 180.22452 * 3 2 1 5 5 C 1.50706 * 122.74900 * 179.75618 * 4 3 2 6 6 C 1.33637 * 114.50097 * 359.48479 * 4 3 2 7 7 C 1.50700 * 126.03650 * 180.26738 * 6 4 3 8 8 H 1.08998 * 109.47321 * 15.00336 * 7 6 4 9 9 C 1.53000 * 109.47058 * 255.00137 * 7 6 4 10 10 N 1.46905 * 109.47337 * 135.00167 * 7 6 4 11 11 C 1.46893 * 110.99954 * 204.99987 * 10 7 6 12 12 C 1.53007 * 109.46843 * 179.97438 * 11 10 7 13 13 C 1.53001 * 109.47094 * 300.00088 * 12 11 10 14 14 C 1.52996 * 109.47231 * 59.99883 * 12 11 10 15 15 C 1.50697 * 109.47342 * 180.02562 * 12 11 10 16 16 H 1.08006 * 119.99792 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00531 * 179.97438 * 15 12 11 18 18 N 1.31523 * 119.99711 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00556 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47003 * 89.99780 * 19 17 15 21 21 H 1.48498 * 109.47238 * 209.99897 * 19 17 15 22 22 H 1.48500 * 109.47099 * 330.00322 * 19 17 15 23 23 S 1.70985 * 124.91418 * 179.69410 * 2 1 3 24 24 H 1.08997 * 109.47741 * 270.30328 * 1 2 3 25 25 H 1.09004 * 109.46884 * 30.30712 * 1 2 3 26 26 H 1.09008 * 109.47556 * 150.29932 * 1 2 3 27 27 H 1.09001 * 109.46953 * 269.70773 * 5 4 3 28 28 H 1.09000 * 109.47318 * 29.70371 * 5 4 3 29 29 H 1.09000 * 109.47161 * 149.71001 * 5 4 3 30 30 H 1.08992 * 109.47396 * 60.00224 * 9 7 6 31 31 H 1.09004 * 109.47404 * 180.02562 * 9 7 6 32 32 H 1.08998 * 109.47433 * 299.99754 * 9 7 6 33 33 H 1.00904 * 110.99664 * 81.04179 * 10 7 6 34 34 H 1.09004 * 109.47408 * 299.99303 * 11 10 7 35 35 H 1.08995 * 109.47622 * 60.00298 * 11 10 7 36 36 H 1.09000 * 109.47252 * 59.99845 * 13 12 11 37 37 H 1.08990 * 109.47211 * 180.02562 * 13 12 11 38 38 H 1.09007 * 109.47026 * 299.99951 * 13 12 11 39 39 H 1.08998 * 109.47310 * 60.00014 * 14 12 11 40 40 H 1.09000 * 109.47418 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.47044 * 300.00111 * 14 12 11 42 42 H 0.96996 * 119.99824 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8792 -0.0046 5 6 4.5307 2.0245 -0.0106 6 6 3.9353 -0.4007 0.0022 7 6 5.3574 -0.8995 0.0049 8 1 6.0288 -0.0817 0.2666 9 6 5.7151 -1.4280 -1.3856 10 7 5.4953 -1.9806 0.9900 11 6 6.8831 -2.0920 1.4585 12 6 6.9866 -3.2253 2.4812 13 6 6.0699 -2.9259 3.6689 14 6 6.5615 -4.5420 1.8281 15 6 8.4102 -3.3394 2.9623 16 1 9.1657 -2.6706 2.5768 17 6 8.7483 -4.2973 3.8944 18 7 7.8283 -5.1113 4.3642 19 14 10.5130 -4.4391 4.4903 20 1 10.7053 -3.5704 5.6792 21 1 10.8002 -5.8494 4.8559 22 1 11.4364 -4.0100 3.4093 23 16 2.4856 -1.4021 0.0075 24 1 -0.3634 0.0054 1.0276 25 1 -0.3633 0.8873 -0.5186 26 1 -0.3634 -0.8927 -0.5092 27 1 4.7670 2.2951 -1.0397 28 1 4.0906 2.8818 0.4986 29 1 5.4432 1.7248 0.5049 30 1 5.6129 -0.6260 -2.1165 31 1 6.7435 -1.7892 -1.3836 32 1 5.0438 -2.2458 -1.6473 33 1 5.1695 -2.8577 0.6123 34 1 7.5363 -2.3050 0.6122 35 1 7.1858 -1.1542 1.9242 36 1 5.0401 -2.8431 3.3213 37 1 6.1440 -3.7329 4.3976 38 1 6.3728 -1.9878 4.1342 39 1 7.2145 -4.7554 0.9819 40 1 6.6357 -5.3495 2.5565 41 1 5.5317 -4.4592 1.4805 42 1 8.0661 -5.7850 5.0203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414162200.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:41 Heat of formation + Delta-G solvation = 26.869481 kcal Electronic energy + Delta-G solvation = -20422.426024 eV Core-core repulsion = 17528.676834 eV Total energy + Delta-G solvation = -2893.749190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.86234 -37.46396 -35.09137 -32.78391 -31.35930 -29.34009 -28.83160 -27.00969 -25.58433 -25.23504 -24.03773 -22.77530 -21.63235 -19.00620 -18.34198 -17.53831 -16.00811 -15.48475 -15.10270 -14.75772 -14.34568 -14.24392 -13.69352 -13.41634 -13.25403 -12.89514 -12.77548 -12.69682 -12.43783 -12.28006 -12.03098 -11.90482 -11.73027 -11.25358 -11.15084 -11.08625 -10.79962 -10.64665 -10.61172 -10.20462 -10.06976 -9.52881 -9.41107 -9.18217 -8.98875 -8.64937 -8.42710 -8.29855 -7.79097 -5.92274 -4.02836 0.86492 1.50287 1.95309 2.88313 3.30609 3.37693 3.40141 4.13588 4.41806 4.67099 4.96352 5.01203 5.16327 5.26184 5.33254 5.33395 5.34347 5.42545 5.62178 5.67552 5.73448 5.83488 5.94318 6.03040 6.14943 6.28510 6.36458 6.40719 6.68904 6.86390 7.04774 7.14484 7.36623 7.44078 7.65969 7.74265 7.81148 7.86692 7.88039 8.19044 8.32806 8.53967 8.98390 9.62276 11.08226 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028593 B = 0.003988 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.013997 B = 7018.986435 C = 7339.121482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.022 3.978 3 N -0.471 5.471 4 C 0.049 3.951 5 C -0.075 4.075 6 C -0.183 4.183 7 C 0.153 3.847 8 H 0.096 0.904 9 C -0.177 4.177 10 N -0.679 5.679 11 C 0.076 3.924 12 C 0.069 3.931 13 C -0.119 4.119 14 C -0.132 4.132 15 C -0.507 4.507 16 H 0.052 0.948 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.276 1.276 23 S 0.140 5.860 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.339 0.661 34 H 0.017 0.983 35 H 0.057 0.943 36 H 0.019 0.981 37 H 0.074 0.926 38 H 0.017 0.983 39 H 0.019 0.981 40 H 0.083 0.917 41 H 0.010 0.990 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 8.174 -10.612 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.255 4.255 3 N -0.187 5.187 4 C -0.083 4.083 5 C -0.135 4.135 6 C -0.305 4.305 7 C 0.040 3.960 8 H 0.113 0.887 9 C -0.236 4.236 10 N -0.310 5.310 11 C -0.052 4.052 12 C 0.069 3.931 13 C -0.177 4.177 14 C -0.190 4.190 15 C -0.546 4.546 16 H 0.070 0.930 17 C -0.135 4.135 18 N -0.523 5.523 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.201 1.201 23 S 0.395 5.605 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.159 0.841 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.093 0.907 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.102 0.898 41 H 0.028 0.972 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.606 7.823 -9.930 17.161 hybrid contribution 2.002 0.194 -0.363 2.044 sum -9.604 8.017 -10.293 16.200 Atomic orbital electron populations 1.20357 0.85624 1.03667 1.03629 1.26837 1.01496 0.91797 1.05401 1.66079 1.04446 1.31931 1.16231 1.20027 0.90107 0.93959 1.04180 1.20326 0.96092 0.94673 1.02385 1.25801 0.99600 0.95372 1.09762 1.19942 0.88605 0.96288 0.91134 0.88657 1.22515 1.02283 1.01390 0.97408 1.60742 1.24645 1.07777 1.37871 1.22204 0.84782 1.00873 0.97327 1.18093 0.94975 0.89260 0.90813 1.21637 0.95934 1.00098 0.99982 1.21830 0.95120 1.02326 0.99676 1.21089 0.93543 1.16511 1.23416 0.92998 1.24880 0.96837 0.95640 0.96175 1.69836 1.32196 1.19946 1.30298 0.86661 0.85468 0.77136 0.79076 1.20797 1.21336 1.20112 1.83939 0.97155 1.11692 1.67665 0.89896 0.89751 0.90411 0.91159 0.90947 0.90619 0.92264 0.91513 0.92480 0.84137 0.96483 0.92401 0.96167 0.90729 0.96349 0.96201 0.89790 0.97150 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.46 36.00 0.38 -0.27 16 2 C 0.02 0.29 7.39 -13.46 -0.10 0.19 16 3 N -0.47 -7.01 10.53 -8.06 -0.08 -7.09 16 4 C 0.05 0.71 6.74 -84.22 -0.57 0.14 16 5 C -0.08 -0.89 10.02 36.01 0.36 -0.53 16 6 C -0.18 -2.68 5.47 -35.92 -0.20 -2.87 16 7 C 0.15 2.24 2.89 -68.86 -0.20 2.04 16 8 H 0.10 1.38 6.07 -51.93 -0.32 1.06 16 9 C -0.18 -2.25 9.14 37.16 0.34 -1.91 16 10 N -0.68 -11.83 5.35 -107.95 -0.58 -12.41 16 11 C 0.08 1.54 4.38 -3.82 -0.02 1.52 16 12 C 0.07 1.64 0.57 -155.66 -0.09 1.56 16 13 C -0.12 -2.90 8.09 37.16 0.30 -2.59 16 14 C -0.13 -3.06 7.92 37.16 0.29 -2.76 16 15 C -0.51 -13.46 8.01 -34.44 -0.28 -13.73 16 16 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 17 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 18 N -0.88 -24.31 9.35 55.43 0.52 -23.79 16 19 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 S 0.14 1.86 23.07 -107.50 -2.48 -0.62 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.86 6.61 -51.93 -0.34 0.52 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.87 7.45 -51.93 -0.39 0.49 16 32 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.34 5.90 6.51 -39.29 -0.26 5.64 16 34 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 35 H 0.06 1.19 8.05 -51.93 -0.42 0.78 16 36 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 37 H 0.07 1.99 6.07 -51.93 -0.31 1.68 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 41 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 42 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -28.61 343.17 -9.15 -37.77 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.82 Total: 2.58 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 0.14 Total: -17.55 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -0.14 Total: -43.29 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.48 Total: -0.62 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.61 -9.15 -37.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414162200.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.635 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds