Wall clock time and date at job start Tue Mar 31 2020 05:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47171 * 2 1 4 4 C 1.38226 * 119.61914 * 124.99556 * 3 2 1 5 5 C 1.38630 * 119.15987 * 180.02562 * 4 3 2 6 6 C 1.38671 * 118.41667 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.41190 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47303 * 90.00293 * 7 6 5 9 9 C 1.39684 * 120.00277 * 179.97438 * 8 7 6 10 10 C 1.39342 * 119.94842 * 359.72572 * 9 8 7 11 11 C 1.38478 * 120.42330 * 179.72253 * 10 9 8 12 12 C 1.37690 * 120.32036 * 0.54924 * 11 10 9 13 13 C 1.40745 * 119.89800 * 359.72693 * 12 11 10 14 14 C 1.41411 * 120.21098 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00149 * 150.18862 * 14 13 12 16 16 C 1.39929 * 119.99703 * 330.19401 * 14 13 12 17 17 N 1.30829 * 119.99803 * 161.73005 * 16 14 13 18 18 Si 1.86794 * 120.00156 * 341.72809 * 16 14 13 19 19 H 1.48503 * 109.47224 * 95.41429 * 18 16 14 20 20 H 1.48504 * 109.47107 * 215.41186 * 18 16 14 21 21 H 1.48498 * 109.47291 * 335.41226 * 18 16 14 22 22 C 1.38277 * 119.95388 * 179.97438 * 9 8 7 23 23 C 1.38176 * 119.16824 * 0.27639 * 6 5 4 24 24 N 1.31855 * 119.61633 * 305.02224 * 3 2 1 25 25 H 1.09006 * 109.46970 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47478 * 299.99868 * 1 2 3 27 27 H 1.09002 * 109.46834 * 60.00727 * 1 2 3 28 28 H 1.08999 * 109.47322 * 239.99663 * 2 1 3 29 29 H 1.09006 * 109.46687 * 119.99760 * 2 1 3 30 30 H 1.08004 * 120.41826 * 0.04390 * 4 3 2 31 31 H 1.07998 * 120.78851 * 179.97438 * 5 4 3 32 32 H 1.09008 * 109.46828 * 210.00026 * 7 6 5 33 33 H 1.08998 * 109.47324 * 329.99665 * 7 6 5 34 34 H 0.97000 * 119.99683 * 359.97438 * 8 7 6 35 35 H 1.08003 * 119.78938 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.84095 * 180.27786 * 11 10 9 37 37 H 1.08002 * 120.04928 * 179.74654 * 12 11 10 38 38 H 0.97000 * 120.00594 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.15919 * 359.97438 * 22 9 8 40 40 H 1.08002 * 119.61936 * 179.70613 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9098 1.8352 0.9844 5 6 3.3655 3.1445 0.9756 6 6 2.9191 3.9918 -0.0272 7 6 3.3861 5.4237 -0.0801 8 7 4.6034 5.5108 -0.8904 9 6 5.2257 6.7461 -1.0856 10 6 4.6844 7.8957 -0.5138 11 6 5.2963 9.1245 -0.6962 12 6 6.4411 9.2251 -1.4546 13 6 6.9963 8.0735 -2.0431 14 6 8.1721 8.1691 -2.8229 15 1 8.8566 7.3352 -2.8724 16 6 8.4487 9.3443 -3.5303 17 7 9.6641 9.5838 -3.9510 18 14 7.0827 10.5712 -3.8738 19 1 7.0924 11.6279 -2.8305 20 1 7.2967 11.1898 -5.2068 21 1 5.7731 9.8713 -3.8574 22 6 6.3750 6.8270 -1.8501 23 6 2.0367 3.5083 -0.9743 24 7 1.6294 2.2545 -0.9387 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.2365 1.1476 1.7505 31 1 4.0512 3.4962 1.7322 32 1 2.6078 6.0434 -0.5257 33 1 3.5961 5.7749 0.9302 34 1 4.9774 4.7106 -1.2913 35 1 3.7840 7.8274 0.0788 36 1 4.8712 10.0088 -0.2450 37 1 6.9125 10.1863 -1.5974 38 1 9.8559 10.3983 -4.4417 39 1 6.7934 5.9371 -2.2967 40 1 1.6807 4.1633 -1.7557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449696152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:54 Heat of formation + Delta-G solvation = 41.996631 kcal Electronic energy + Delta-G solvation = -20294.207807 eV Core-core repulsion = 17265.670628 eV Total energy + Delta-G solvation = -3028.537179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54549 -38.11949 -35.83409 -34.19224 -33.18843 -32.49132 -30.80866 -30.18075 -28.17775 -25.65636 -25.06861 -24.20280 -22.91827 -21.36842 -21.04988 -20.10103 -17.52805 -16.94874 -16.49079 -15.98302 -15.73057 -14.90414 -14.67924 -14.58326 -14.46020 -14.03259 -13.60042 -13.40855 -13.21733 -13.12655 -12.63712 -12.45454 -12.32164 -12.02517 -11.83282 -11.47477 -11.43161 -11.35279 -10.87386 -10.73285 -10.42520 -10.00150 -9.76258 -9.57729 -9.49487 -9.25696 -9.03395 -8.89245 -7.59192 -6.87583 -6.48728 -4.43643 0.86330 1.10899 2.70340 2.91883 3.19022 3.29190 3.41035 3.51321 4.04326 4.07144 4.25916 4.43151 4.60542 4.65277 4.74652 4.84977 4.96855 5.04409 5.14231 5.34629 5.51110 5.54469 5.58486 5.67020 5.73764 5.78216 5.92729 6.02217 6.04758 6.18350 6.31746 6.52789 6.58354 6.80010 6.84001 6.99510 7.32118 7.56323 7.69081 7.79432 7.81690 8.00392 8.35077 8.41351 8.50655 8.78667 8.92122 10.15279 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036399 B = 0.002919 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.075891 B = 9589.195834 C = 9762.978138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C 0.128 3.872 4 C -0.174 4.174 5 C -0.055 4.055 6 C -0.154 4.154 7 C 0.180 3.820 8 N -0.757 5.757 9 C 0.235 3.765 10 C -0.302 4.302 11 C -0.048 4.048 12 C -0.271 4.271 13 C 0.125 3.875 14 C -0.451 4.451 15 H 0.088 0.912 16 C 0.085 3.915 17 N -0.813 5.813 18 Si 0.915 3.085 19 H -0.272 1.272 20 H -0.294 1.294 21 H -0.244 1.244 22 C -0.276 4.276 23 C 0.121 3.879 24 N -0.483 5.483 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.391 0.609 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.284 0.716 39 H 0.096 0.904 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 -13.422 8.278 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.010 4.010 4 C -0.194 4.194 5 C -0.082 4.082 6 C -0.156 4.156 7 C 0.055 3.945 8 N -0.390 5.390 9 C 0.136 3.864 10 C -0.324 4.324 11 C -0.067 4.067 12 C -0.291 4.291 13 C 0.121 3.879 14 C -0.480 4.480 15 H 0.106 0.894 16 C -0.133 4.133 17 N -0.438 5.438 18 Si 0.742 3.258 19 H -0.198 1.198 20 H -0.222 1.222 21 H -0.167 1.167 22 C -0.300 4.300 23 C -0.037 4.037 24 N -0.192 5.192 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.224 0.776 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.108 -13.541 7.617 21.671 hybrid contribution 0.425 0.708 0.346 0.895 sum -14.682 -12.833 7.963 21.064 Atomic orbital electron populations 1.21668 0.94140 1.01619 1.02675 1.20480 0.97021 0.90543 1.03045 1.21313 0.93116 0.96131 0.90454 1.21979 0.99853 0.96883 1.00693 1.21580 0.96581 0.92899 0.97099 1.21038 0.99759 0.97673 0.97137 1.19887 0.88229 0.90233 0.96202 1.44474 1.28413 1.07459 1.58682 1.17534 0.91490 0.84157 0.93254 1.19896 1.05247 0.92210 1.15074 1.20367 0.94575 0.95485 0.96271 1.20905 1.01633 0.98141 1.08417 1.17447 0.90537 0.90577 0.89306 1.19451 1.03928 1.00271 1.24307 0.89410 1.26147 0.96078 0.97744 0.93350 1.69707 1.20249 1.25302 1.28507 0.86266 0.83220 0.79900 0.76413 1.19792 1.22218 1.16713 1.20399 0.99490 0.98172 1.11962 1.22740 0.92946 0.91561 0.96448 1.67493 1.24327 1.03674 1.23690 0.92410 0.92986 0.91519 0.90023 0.90470 0.84870 0.84608 0.91876 0.92023 0.77571 0.89016 0.89002 0.88536 0.90613 0.88563 0.82559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.77 37.16 0.36 -0.71 16 2 C -0.07 -0.57 6.33 -27.88 -0.18 -0.75 16 3 C 0.13 1.35 6.18 -82.58 -0.51 0.83 16 4 C -0.17 -1.68 9.71 -39.44 -0.38 -2.06 16 5 C -0.06 -0.58 9.86 -39.28 -0.39 -0.97 16 6 C -0.15 -1.80 5.27 -104.48 -0.55 -2.35 16 7 C 0.18 2.39 5.06 -5.19 -0.03 2.36 16 8 N -0.76 -12.46 5.72 -59.86 -0.34 -12.81 16 9 C 0.23 4.89 6.64 -83.86 -0.56 4.34 16 10 C -0.30 -6.26 9.32 -39.08 -0.36 -6.62 16 11 C -0.05 -1.06 10.02 -39.69 -0.40 -1.46 16 12 C -0.27 -6.69 7.17 -38.83 -0.28 -6.97 16 13 C 0.12 3.25 5.10 -106.85 -0.55 2.71 16 14 C -0.45 -12.51 9.57 -37.74 -0.36 -12.87 16 15 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 16 C 0.09 2.29 5.40 -17.35 -0.09 2.19 16 17 N -0.81 -22.16 13.93 55.55 0.77 -21.39 16 18 Si 0.92 21.46 24.52 -169.99 -4.17 17.29 16 19 H -0.27 -6.19 6.71 56.52 0.38 -5.81 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.24 -5.88 6.86 56.52 0.39 -5.49 16 22 C -0.28 -6.54 9.63 -38.68 -0.37 -6.91 16 23 C 0.12 1.44 10.86 -17.55 -0.19 1.25 16 24 N -0.48 -5.93 9.88 -9.47 -0.09 -6.02 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.59 7.95 -51.93 -0.41 0.18 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 30 H 0.13 0.94 7.95 -52.48 -0.42 0.52 16 31 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.06 0.83 7.88 -51.92 -0.41 0.42 16 33 H 0.06 0.81 7.91 -51.93 -0.41 0.40 16 34 H 0.39 6.13 8.47 -40.82 -0.35 5.79 16 35 H 0.09 1.67 6.70 -52.48 -0.35 1.32 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.10 2.39 4.73 -52.49 -0.25 2.14 16 38 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 39 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -29.32 333.08 -9.20 -38.52 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.56 Total: 7.38 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -4.83 Total: -27.99 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.34 Total: -40.22 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.17 Total: 17.29 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.32 -9.20 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449696152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.517 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds