Wall clock time and date at job start Tue Mar 31 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47342 * 2 1 4 4 C 1.50707 * 109.47020 * 119.99735 * 2 1 3 5 5 N 1.29021 * 124.91681 * 299.97130 * 4 2 1 6 6 C 1.31778 * 117.12721 * 179.97438 * 5 4 2 7 7 C 1.33641 * 114.49950 * 0.02562 * 6 5 4 8 8 C 1.50702 * 126.03767 * 179.73876 * 7 6 5 9 9 N 1.46897 * 109.47272 * 90.02064 * 8 7 6 10 10 C 1.46898 * 110.99889 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47356 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46920 * 300.00193 * 11 10 9 13 13 C 1.52996 * 109.47081 * 59.99959 * 11 10 9 14 14 C 1.50693 * 109.47261 * 180.02562 * 11 10 9 15 15 H 1.08003 * 120.00410 * 1.35314 * 14 11 10 16 16 C 1.37879 * 120.00222 * 181.35936 * 14 11 10 17 17 N 1.31512 * 120.00734 * 193.95826 * 16 14 11 18 18 Si 1.86809 * 119.99621 * 13.95998 * 16 14 11 19 19 H 1.48500 * 109.46985 * 84.55867 * 18 16 14 20 20 H 1.48503 * 109.46977 * 204.55856 * 18 16 14 21 21 H 1.48502 * 109.47101 * 324.55617 * 18 16 14 22 22 S 1.70976 * 124.91593 * 119.97759 * 4 2 1 23 23 H 1.09003 * 109.47160 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47206 * 299.99902 * 1 2 3 25 25 H 1.08997 * 109.47120 * 60.00515 * 1 2 3 26 26 H 1.08997 * 109.47290 * 239.99143 * 2 1 3 27 27 H 1.09002 * 109.47360 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46738 * 300.00247 * 3 2 1 29 29 H 1.09005 * 109.47525 * 59.99662 * 3 2 1 30 30 H 1.08005 * 122.75448 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.47031 * 210.02324 * 8 7 6 32 32 H 1.09004 * 109.47067 * 330.01820 * 8 7 6 33 33 H 1.00904 * 110.99773 * 56.05070 * 9 8 7 34 34 H 1.08998 * 109.47523 * 300.00069 * 10 9 8 35 35 H 1.09003 * 109.47451 * 60.00244 * 10 9 8 36 36 H 1.08996 * 109.47107 * 69.31415 * 12 11 10 37 37 H 1.08997 * 109.47317 * 189.31930 * 12 11 10 38 38 H 1.09006 * 109.47288 * 309.31377 * 12 11 10 39 39 H 1.08998 * 109.47088 * 60.00655 * 13 11 10 40 40 H 1.09006 * 109.46833 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.47454 * 299.99981 * 13 11 10 42 42 H 0.96994 * 120.00422 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7802 -0.3529 2.4443 6 6 2.2990 -1.0877 3.4073 7 6 3.0300 -2.1225 2.9821 8 6 3.7431 -3.1226 3.8553 9 7 2.8449 -4.2485 4.1444 10 6 3.5080 -5.2459 4.9949 11 6 2.5438 -6.4008 5.2732 12 6 1.3009 -5.8665 5.9879 13 6 2.1318 -7.0511 3.9510 14 6 3.2238 -7.4237 6.1462 15 1 4.2344 -7.2556 6.4882 16 6 2.5560 -8.5743 6.5083 17 7 3.0256 -9.3303 7.4766 18 14 0.9839 -9.0595 5.6235 19 1 1.3231 -9.8049 4.3847 20 1 0.1624 -9.9215 6.5107 21 1 0.2166 -7.8377 5.2717 22 16 3.0189 -2.1067 1.2202 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9562 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 2.1461 -0.8715 4.4544 31 1 4.6302 -3.4889 3.3384 32 1 4.0383 -2.6442 4.7892 33 1 2.5059 -4.6687 3.2920 34 1 4.3932 -5.6269 4.4856 35 1 3.8019 -4.7826 5.9368 36 1 0.7199 -5.2547 5.2978 37 1 0.6926 -6.7025 6.3329 38 1 1.6048 -5.2616 6.8422 39 1 3.0172 -7.4317 3.4419 40 1 1.4445 -7.8736 4.1493 41 1 1.6397 -6.3110 3.3199 42 1 2.5556 -10.1395 7.7315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459730106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:54 Heat of formation + Delta-G solvation = 43.611230 kcal Electronic energy + Delta-G solvation = -19866.746044 eV Core-core repulsion = 16973.722831 eV Total energy + Delta-G solvation = -2893.023214 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.88037 -37.43411 -35.79223 -34.22635 -31.72648 -29.91328 -27.44656 -26.55177 -26.23672 -25.14498 -24.56034 -22.94512 -21.91396 -19.09428 -18.50087 -18.19680 -16.12556 -15.95458 -15.47441 -14.93465 -14.83140 -14.48317 -14.36011 -13.90450 -13.65381 -13.02697 -12.90092 -12.85014 -12.58949 -12.39709 -12.25272 -12.03142 -11.83737 -11.67148 -11.49230 -11.38714 -11.16901 -10.92374 -10.34314 -10.12617 -10.02385 -9.85245 -9.62230 -9.33335 -8.99592 -8.81969 -8.58359 -8.39006 -7.98320 -6.09464 -4.05440 0.65919 1.26498 1.69503 2.81743 3.30574 3.39969 3.44157 3.95181 4.42741 4.57812 4.64691 4.79021 4.79330 4.96035 5.19184 5.23608 5.25456 5.35837 5.51374 5.56138 5.63909 5.67685 5.80252 5.92763 5.94922 5.96710 6.06615 6.21576 6.22321 6.41463 6.55136 6.72896 6.79207 6.91162 7.03621 7.37228 7.39054 7.55652 7.70279 7.74859 7.87867 8.52805 8.94868 9.56560 11.03927 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034511 B = 0.003429 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.143648 B = 8163.829777 C = 8455.934058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.015 4.015 3 C -0.139 4.139 4 C 0.047 3.953 5 N -0.468 5.468 6 C 0.049 3.951 7 C -0.204 4.204 8 C 0.133 3.867 9 N -0.684 5.684 10 C 0.084 3.916 11 C 0.042 3.958 12 C -0.127 4.127 13 C -0.150 4.150 14 C -0.513 4.513 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.896 5.896 18 Si 0.884 3.116 19 H -0.288 1.288 20 H -0.306 1.306 21 H -0.246 1.246 22 S 0.104 5.896 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.176 0.824 31 H 0.038 0.962 32 H 0.092 0.908 33 H 0.337 0.663 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.031 0.969 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.033 0.967 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 18.544 -15.649 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.037 4.037 3 C -0.198 4.198 4 C -0.231 4.231 5 N -0.181 5.181 6 C -0.102 4.102 7 C -0.325 4.325 8 C 0.002 3.998 9 N -0.316 5.316 10 C -0.044 4.044 11 C 0.041 3.959 12 C -0.185 4.185 13 C -0.207 4.207 14 C -0.551 4.551 15 H 0.090 0.910 16 C -0.128 4.128 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.216 1.216 20 H -0.235 1.235 21 H -0.172 1.172 22 S 0.360 5.640 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.193 0.807 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.156 0.844 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.834 18.531 -15.676 24.342 hybrid contribution -0.272 -0.831 -0.087 0.878 sum -2.105 17.701 -15.764 23.796 Atomic orbital electron populations 1.21799 0.92896 1.02452 1.02710 1.19796 0.96891 0.95943 0.91085 1.21794 1.01066 0.94159 1.02734 1.26961 1.01284 0.97928 0.96963 1.66168 1.22739 1.30626 0.98615 1.21685 0.96548 0.92184 0.99821 1.25980 1.07912 1.03466 0.95173 1.20291 0.92418 0.90384 0.96724 1.60709 1.38127 1.10863 1.21923 1.22012 0.95378 0.91424 0.95613 1.18468 0.92854 0.92248 0.92380 1.22078 0.97981 0.99251 0.99166 1.22376 0.99910 0.99321 0.99091 1.20849 1.01772 1.02524 1.29997 0.91028 1.24971 0.97141 0.96521 0.94145 1.69956 1.40911 1.15412 1.27060 0.87318 0.84489 0.78081 0.78461 1.21592 1.23523 1.17160 1.83989 1.48081 1.27414 1.04553 0.92463 0.91433 0.91783 0.89572 0.92620 0.91785 0.91447 0.80695 0.94400 0.88973 0.84404 0.95846 0.91364 0.94967 0.93728 0.94031 0.93512 0.94117 0.94843 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.17 37.16 0.34 -0.79 16 2 C -0.01 -0.13 3.35 -91.77 -0.31 -0.43 16 3 C -0.14 -1.04 9.17 37.16 0.34 -0.70 16 4 C 0.05 0.53 5.91 -13.46 -0.08 0.45 16 5 N -0.47 -6.12 10.53 -11.86 -0.12 -6.25 16 6 C 0.05 0.63 11.25 -19.19 -0.22 0.42 16 7 C -0.20 -2.62 6.11 -35.92 -0.22 -2.84 16 8 C 0.13 1.79 6.22 -4.98 -0.03 1.76 16 9 N -0.68 -11.07 5.89 -115.06 -0.68 -11.74 16 10 C 0.08 1.60 4.57 -3.82 -0.02 1.58 16 11 C 0.04 0.94 0.57 -155.66 -0.09 0.85 16 12 C -0.13 -2.82 7.55 37.16 0.28 -2.54 16 13 C -0.15 -3.18 7.37 37.16 0.27 -2.91 16 14 C -0.51 -14.04 8.62 -34.44 -0.30 -14.33 16 15 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 16 C 0.07 2.11 5.32 -17.82 -0.09 2.02 16 17 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 18 Si 0.88 21.92 22.79 -169.99 -3.87 18.05 16 19 H -0.29 -7.08 7.10 56.52 0.40 -6.68 16 20 H -0.31 -7.75 7.11 56.52 0.40 -7.34 16 21 H -0.25 -5.69 4.65 56.52 0.26 -5.43 16 22 S 0.10 1.17 23.17 -107.50 -2.49 -1.32 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.18 2.08 8.06 -52.48 -0.42 1.66 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.34 5.43 6.76 -39.29 -0.27 5.17 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.03 0.65 7.88 -51.93 -0.41 0.24 16 37 H 0.04 1.04 4.30 -51.93 -0.22 0.82 16 38 H 0.04 0.90 8.12 -51.93 -0.42 0.48 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.92 2.25 -51.93 -0.12 0.80 16 41 H 0.03 0.61 6.57 -51.93 -0.34 0.27 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 338.28 15.07 5.10 5.10 Total: -1.00 -30.05 338.28 -8.38 -38.43 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.97 Total: 1.71 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -0.12 Total: -17.45 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.03 Total: -44.52 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -3.87 Total: 18.05 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.49 Total: -1.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.05 -8.38 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459730106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.043 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds