Wall clock time and date at job start Tue Mar 31 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47342 * 2 1 4 4 C 1.50707 * 109.47020 * 119.99735 * 2 1 3 5 5 N 1.29021 * 124.91681 * 299.97130 * 4 2 1 6 6 C 1.31778 * 117.12721 * 179.97438 * 5 4 2 7 7 C 1.33641 * 114.49950 * 0.02562 * 6 5 4 8 8 C 1.50702 * 126.03767 * 179.73876 * 7 6 5 9 9 N 1.46897 * 109.47272 * 90.02064 * 8 7 6 10 10 C 1.46898 * 110.99889 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47356 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46920 * 300.00193 * 11 10 9 13 13 C 1.52996 * 109.47081 * 59.99959 * 11 10 9 14 14 C 1.50693 * 109.47261 * 180.02562 * 11 10 9 15 15 H 1.08003 * 120.00410 * 1.35314 * 14 11 10 16 16 C 1.37879 * 120.00222 * 181.35936 * 14 11 10 17 17 N 1.31512 * 120.00734 * 193.95826 * 16 14 11 18 18 Si 1.86809 * 119.99621 * 13.95998 * 16 14 11 19 19 H 1.48500 * 109.46985 * 84.55867 * 18 16 14 20 20 H 1.48503 * 109.46977 * 204.55856 * 18 16 14 21 21 H 1.48502 * 109.47101 * 324.55617 * 18 16 14 22 22 S 1.70976 * 124.91593 * 119.97759 * 4 2 1 23 23 H 1.09003 * 109.47160 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47206 * 299.99902 * 1 2 3 25 25 H 1.08997 * 109.47120 * 60.00515 * 1 2 3 26 26 H 1.08997 * 109.47290 * 239.99143 * 2 1 3 27 27 H 1.09002 * 109.47360 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46738 * 300.00247 * 3 2 1 29 29 H 1.09005 * 109.47525 * 59.99662 * 3 2 1 30 30 H 1.08005 * 122.75448 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.47031 * 210.02324 * 8 7 6 32 32 H 1.09004 * 109.47067 * 330.01820 * 8 7 6 33 33 H 1.00904 * 110.99773 * 56.05070 * 9 8 7 34 34 H 1.08998 * 109.47523 * 300.00069 * 10 9 8 35 35 H 1.09003 * 109.47451 * 60.00244 * 10 9 8 36 36 H 1.08996 * 109.47107 * 69.31415 * 12 11 10 37 37 H 1.08997 * 109.47317 * 189.31930 * 12 11 10 38 38 H 1.09006 * 109.47288 * 309.31377 * 12 11 10 39 39 H 1.08998 * 109.47088 * 60.00655 * 13 11 10 40 40 H 1.09006 * 109.46833 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.47454 * 299.99981 * 13 11 10 42 42 H 0.96994 * 120.00422 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7802 -0.3529 2.4443 6 6 2.2990 -1.0877 3.4073 7 6 3.0300 -2.1225 2.9821 8 6 3.7431 -3.1226 3.8553 9 7 2.8449 -4.2485 4.1444 10 6 3.5080 -5.2459 4.9949 11 6 2.5438 -6.4008 5.2732 12 6 1.3009 -5.8665 5.9879 13 6 2.1318 -7.0511 3.9510 14 6 3.2238 -7.4237 6.1462 15 1 4.2344 -7.2556 6.4882 16 6 2.5560 -8.5743 6.5083 17 7 3.0256 -9.3303 7.4766 18 14 0.9839 -9.0595 5.6235 19 1 1.3231 -9.8049 4.3847 20 1 0.1624 -9.9215 6.5107 21 1 0.2166 -7.8377 5.2717 22 16 3.0189 -2.1067 1.2202 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9562 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 2.1461 -0.8715 4.4544 31 1 4.6302 -3.4889 3.3384 32 1 4.0383 -2.6442 4.7892 33 1 2.5059 -4.6687 3.2920 34 1 4.3932 -5.6269 4.4856 35 1 3.8019 -4.7826 5.9368 36 1 0.7199 -5.2547 5.2978 37 1 0.6926 -6.7025 6.3329 38 1 1.6048 -5.2616 6.8422 39 1 3.0172 -7.4317 3.4419 40 1 1.4445 -7.8736 4.1493 41 1 1.6397 -6.3110 3.3199 42 1 2.5556 -10.1395 7.7315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459730106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:54 Heat of formation + Delta-G solvation = 23.940335 kcal Electronic energy + Delta-G solvation = -19867.599038 eV Core-core repulsion = 16973.722831 eV Total energy + Delta-G solvation = -2893.876208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79557 -39.00754 -36.67600 -35.57223 -33.71761 -31.08442 -28.03442 -27.99184 -27.59644 -27.06283 -25.88074 -24.20466 -22.73826 -20.70335 -19.59923 -19.07929 -18.07504 -17.48130 -16.78072 -16.01410 -15.94794 -15.58003 -15.12889 -15.11978 -14.98536 -14.78980 -14.28396 -14.19316 -13.86547 -13.75686 -13.62904 -13.25807 -12.97103 -12.69302 -12.46247 -12.29321 -12.17121 -12.12009 -11.96110 -11.87946 -11.86588 -11.60951 -10.97088 -10.57581 -10.53486 -10.35988 -10.23791 -9.74638 -9.29835 -8.29561 -6.28578 -0.25673 0.37778 0.78327 1.34453 1.38715 1.48806 1.87322 2.35329 3.07410 3.16161 3.40051 3.87821 3.91279 4.11299 4.15069 4.17134 4.24939 4.41742 4.52774 4.56478 4.66341 4.76565 4.82161 4.85967 4.87638 4.90164 4.95741 5.02559 5.07696 5.10118 5.14585 5.21175 5.29864 5.34702 5.43925 5.59351 5.73667 5.85299 6.07695 6.32405 6.47188 6.77820 6.79870 7.36918 8.87582 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034511 B = 0.003429 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.143648 B = 8163.829777 C = 8455.934058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.019 4.019 3 C -0.135 4.135 4 C 0.049 3.951 5 N -0.492 5.492 6 C 0.043 3.957 7 C -0.221 4.221 8 C 0.138 3.862 9 N -0.682 5.682 10 C 0.097 3.903 11 C 0.036 3.964 12 C -0.122 4.122 13 C -0.148 4.148 14 C -0.512 4.512 15 H 0.032 0.968 16 C 0.017 3.983 17 N -0.948 5.948 18 Si 0.941 3.059 19 H -0.282 1.282 20 H -0.316 1.316 21 H -0.215 1.215 22 S 0.128 5.872 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.179 0.821 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.340 0.660 34 H 0.020 0.980 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.047 0.953 40 H 0.029 0.971 41 H 0.066 0.934 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 20.141 -18.459 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.041 4.041 3 C -0.194 4.194 4 C -0.229 4.229 5 N -0.206 5.206 6 C -0.108 4.108 7 C -0.343 4.343 8 C 0.007 3.993 9 N -0.314 5.314 10 C -0.032 4.032 11 C 0.035 3.965 12 C -0.179 4.179 13 C -0.205 4.205 14 C -0.551 4.551 15 H 0.050 0.950 16 C -0.180 4.180 17 N -0.588 5.588 18 Si 0.771 3.229 19 H -0.210 1.210 20 H -0.246 1.246 21 H -0.139 1.139 22 S 0.384 5.616 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.159 0.841 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.082 20.159 -18.515 27.544 hybrid contribution 0.210 -1.224 0.771 1.462 sum -2.872 18.934 -17.744 26.107 Atomic orbital electron populations 1.21781 0.92500 1.02158 1.03103 1.20034 0.97186 0.96449 0.90468 1.21772 1.00979 0.93506 1.03115 1.27563 1.00204 0.97715 0.97405 1.66219 1.23783 1.31327 0.99273 1.21850 0.96437 0.92275 1.00280 1.25872 1.08623 1.03554 0.96211 1.20243 0.92188 0.89497 0.97377 1.60605 1.38524 1.10446 1.21848 1.21672 0.94486 0.91060 0.95945 1.18460 0.93399 0.92223 0.92419 1.21989 0.97619 0.98883 0.99456 1.22298 1.00063 0.99627 0.98513 1.21203 1.00339 1.03616 1.29917 0.94967 1.25786 1.00792 0.96648 0.94744 1.70102 1.43078 1.16307 1.29290 0.86393 0.80860 0.78612 0.77053 1.20965 1.24594 1.13905 1.83868 1.47635 1.27050 1.03037 0.93070 0.93028 0.89421 0.87575 0.92718 0.89496 0.92981 0.80361 0.93650 0.88582 0.84066 0.96224 0.92321 0.92662 0.95118 0.94526 0.93359 0.95242 0.91523 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.17 71.98 0.66 -1.21 16 2 C -0.02 -0.28 3.35 -11.54 -0.04 -0.31 16 3 C -0.13 -1.69 9.17 71.98 0.66 -1.03 16 4 C 0.05 1.01 5.91 88.52 0.52 1.53 16 5 N -0.49 -12.16 10.53 -191.44 -2.02 -14.17 16 6 C 0.04 1.06 11.25 83.66 0.94 2.00 16 7 C -0.22 -5.24 6.11 24.64 0.15 -5.09 16 8 C 0.14 3.44 6.22 85.56 0.53 3.97 16 9 N -0.68 -20.48 5.89 -517.92 -3.05 -23.53 16 10 C 0.10 3.60 4.57 86.30 0.39 4.00 16 11 C 0.04 1.57 0.57 -52.93 -0.03 1.54 16 12 C -0.12 -5.15 7.55 71.98 0.54 -4.61 16 13 C -0.15 -5.86 7.37 71.98 0.53 -5.33 16 14 C -0.51 -28.44 8.62 25.60 0.22 -28.22 16 15 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 16 C 0.02 1.00 5.32 84.66 0.45 1.45 16 17 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 18 Si 0.94 44.89 22.79 68.60 1.56 46.46 16 19 H -0.28 -13.10 7.10 99.48 0.71 -12.40 16 20 H -0.32 -15.50 7.11 99.48 0.71 -14.79 16 21 H -0.21 -9.15 4.65 99.48 0.46 -8.69 16 22 S 0.13 2.57 23.17 -56.49 -1.31 1.26 16 23 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.11 1.11 8.12 -2.39 -0.02 1.09 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.18 4.07 8.06 -2.91 -0.02 4.04 16 31 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.34 9.86 6.76 -89.69 -0.61 9.26 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 2.07 7.88 -2.39 -0.02 2.05 16 37 H 0.03 1.36 4.30 -2.39 -0.01 1.35 16 38 H 0.04 1.54 8.12 -2.38 -0.02 1.52 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.03 1.23 2.25 -2.38 -0.01 1.23 16 41 H 0.07 2.19 6.57 -2.39 -0.02 2.17 16 42 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -65.41 338.28 1.18 -64.23 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.15 Total: 16.31 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 5.54 Total: -31.32 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -4.76 Total: -96.95 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.56 Total: 46.46 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.31 Total: 1.26 kcal Total: -65.41 1.18 -64.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459730106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.174 kcal (2) G-P(sol) polarization free energy of solvation -65.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds