Wall clock time and date at job start Tue Mar 31 2020 06:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50698 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.33639 * 122.75261 * 124.73143 * 4 3 2 6 6 S 1.76202 * 107.92378 * 179.97438 * 5 4 3 7 7 C 1.70977 * 90.28287 * 0.27282 * 6 5 4 8 8 C 1.50702 * 124.91464 * 179.83805 * 7 6 5 9 9 N 1.46895 * 109.47375 * 270.00032 * 8 7 6 10 10 C 1.46898 * 111.00224 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47192 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47202 * 300.00421 * 11 10 9 13 13 C 1.52997 * 109.46852 * 60.00542 * 11 10 9 14 14 C 1.50700 * 109.47008 * 180.02562 * 11 10 9 15 15 H 1.08008 * 120.00179 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00133 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99883 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 120.00310 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47089 * 60.00106 * 18 16 14 20 20 H 1.48500 * 109.47021 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46832 * 300.00314 * 18 16 14 22 22 N 1.29030 * 110.16893 * 359.84192 * 7 6 5 23 23 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 27 27 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.08000 * 126.03771 * 0.03341 * 5 4 3 31 31 H 1.08994 * 109.46901 * 30.00579 * 8 7 6 32 32 H 1.09004 * 109.46861 * 150.00353 * 8 7 6 33 33 H 1.00900 * 110.99962 * 303.95548 * 9 8 7 34 34 H 1.09000 * 109.47079 * 300.00704 * 10 9 8 35 35 H 1.09004 * 109.46871 * 60.00146 * 10 9 8 36 36 H 1.08996 * 109.46971 * 60.00010 * 12 11 10 37 37 H 1.09001 * 109.46697 * 180.02562 * 12 11 10 38 38 H 1.08996 * 109.46882 * 299.99568 * 12 11 10 39 39 H 1.09005 * 109.47420 * 59.99762 * 13 11 10 40 40 H 1.09001 * 109.47077 * 179.97438 * 13 11 10 41 41 H 1.08996 * 109.47241 * 299.99941 * 13 11 10 42 42 H 0.97003 * 120.00227 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2696 2.0831 -0.9245 6 16 5.9731 1.8267 -0.5542 7 6 5.5442 0.8771 0.8014 8 6 6.5242 0.2188 1.7381 9 7 6.8407 -1.1291 1.2476 10 6 7.7960 -1.8024 2.1375 11 6 8.1000 -3.2005 1.5954 12 6 6.8058 -4.0137 1.5273 13 6 8.7033 -3.0840 0.1942 14 6 9.0795 -3.8914 2.5087 15 1 9.4480 -3.3843 3.3882 16 6 9.5052 -5.1710 2.2216 17 7 9.0569 -5.7883 1.1504 18 14 10.7188 -6.0278 3.3542 19 1 10.1319 -6.1415 4.7135 20 1 11.0149 -7.3842 2.8272 21 1 11.9749 -5.2383 3.4218 22 7 4.2602 0.8057 0.9063 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.8785 2.6572 -1.7514 31 1 7.4372 0.8123 1.7846 32 1 6.0849 0.1494 2.7333 33 1 6.0022 -1.6788 1.1343 34 1 8.7178 -1.2228 2.1863 35 1 7.3660 -1.8858 3.1357 36 1 6.0970 -3.5141 0.8670 37 1 7.0225 -5.0098 1.1415 38 1 6.3760 -4.0967 2.5256 39 1 9.6254 -2.5046 0.2426 40 1 8.9203 -4.0799 -0.1919 41 1 7.9946 -2.5843 -0.4662 42 1 9.3567 -6.6884 0.9482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459730430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:20 Heat of formation + Delta-G solvation = 22.772559 kcal Electronic energy + Delta-G solvation = -19820.594135 eV Core-core repulsion = 16926.667289 eV Total energy + Delta-G solvation = -2893.926846 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.93678 -37.02791 -35.09358 -33.92916 -31.45769 -30.22080 -27.19278 -26.94370 -25.55321 -25.19789 -23.57984 -22.35427 -21.41802 -19.59514 -18.51280 -17.54897 -16.06637 -15.56011 -15.22674 -15.06822 -14.67146 -14.60385 -14.13294 -13.73044 -13.26905 -13.08194 -12.50492 -12.43675 -12.38591 -12.19693 -12.01282 -11.73612 -11.33889 -11.12265 -11.04851 -10.97514 -10.74192 -10.64826 -10.62195 -10.17777 -10.06044 -9.58301 -9.39033 -9.35106 -9.11531 -8.68971 -8.61101 -8.28326 -7.81466 -5.90427 -4.01162 0.75517 1.45465 1.85137 2.80194 3.33508 3.38379 3.40833 4.05660 4.44819 4.75125 4.83377 4.95088 4.98689 5.16409 5.22118 5.34986 5.36608 5.49826 5.56436 5.63076 5.73016 5.74704 5.89650 6.10811 6.18865 6.26768 6.29347 6.36464 6.70768 6.88864 7.07143 7.17295 7.36972 7.43908 7.64957 7.76221 7.79206 7.82450 7.89877 8.20937 8.34282 8.55496 8.99871 9.63808 11.10069 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.003524 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.899818 B = 7944.553881 C = 8624.450642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.041 4.041 4 C 0.071 3.929 5 C -0.277 4.277 6 S 0.139 5.861 7 C 0.070 3.930 8 C 0.130 3.870 9 N -0.680 5.680 10 C 0.075 3.925 11 C 0.070 3.930 12 C -0.132 4.132 13 C -0.119 4.119 14 C -0.508 4.508 15 H 0.052 0.948 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.889 3.111 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.278 1.278 22 N -0.472 5.472 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.172 0.828 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.345 0.655 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.010 0.990 37 H 0.083 0.917 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.074 0.926 41 H 0.019 0.981 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.964 15.177 -3.937 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.081 4.081 4 C -0.062 4.062 5 C -0.416 4.416 6 S 0.395 5.605 7 C -0.209 4.209 8 C -0.003 4.003 9 N -0.313 5.313 10 C -0.053 4.053 11 C 0.070 3.930 12 C -0.190 4.190 13 C -0.177 4.177 14 C -0.547 4.547 15 H 0.070 0.930 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.204 1.204 22 N -0.188 5.188 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.189 0.811 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.164 0.836 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.029 0.971 37 H 0.102 0.898 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.689 15.230 -4.473 19.137 hybrid contribution -0.771 -0.661 1.317 1.663 sum -11.460 14.569 -3.156 18.803 Atomic orbital electron populations 1.21777 0.95763 1.01792 1.01515 1.21446 0.95310 0.95755 1.03137 1.20200 0.87016 0.98288 1.02616 1.20243 0.97790 0.96603 0.91541 1.26827 0.95855 1.11686 1.07267 1.84021 1.06417 1.45617 1.24461 1.27074 0.93679 1.00562 0.99571 1.20494 0.94292 0.92325 0.93162 1.60700 1.18121 1.01463 1.51052 1.22213 0.93487 0.97321 0.92240 1.18084 0.93260 0.87845 0.93860 1.21835 0.96272 1.03447 0.97469 1.21645 0.97288 1.01478 0.97308 1.21062 1.25379 0.99416 1.08849 0.92977 1.24881 0.96235 0.97250 0.95157 1.69826 1.43888 1.13138 1.25434 0.86713 0.81779 0.78687 0.81078 1.20456 1.21373 1.20395 1.66093 1.04522 1.21043 1.27131 0.92764 0.92924 0.92577 0.92045 0.90854 0.90623 0.90456 0.81078 0.89302 0.92650 0.83585 0.92215 0.96408 0.97110 0.89801 0.96136 0.96235 0.90694 0.96174 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.23 5.83 -26.73 -0.16 -1.39 16 3 C -0.04 -0.41 5.71 -27.88 -0.16 -0.57 16 4 C 0.07 0.90 6.08 -84.22 -0.51 0.39 16 5 C -0.28 -3.15 11.07 29.12 0.32 -2.83 16 6 S 0.14 1.73 23.18 -107.50 -2.49 -0.76 16 7 C 0.07 1.02 6.90 -13.45 -0.09 0.92 16 8 C 0.13 1.96 6.26 -4.98 -0.03 1.93 16 9 N -0.68 -12.27 5.70 -115.06 -0.66 -12.92 16 10 C 0.08 1.55 4.59 -3.83 -0.02 1.54 16 11 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 12 C -0.13 -3.16 7.92 37.16 0.29 -2.87 16 13 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 14 C -0.51 -13.63 8.01 -34.44 -0.28 -13.90 16 15 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 16 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 17 N -0.88 -24.50 9.35 55.43 0.52 -23.98 16 18 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 N -0.47 -7.07 10.34 -8.05 -0.08 -7.15 16 23 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 28 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.34 6.49 6.76 -39.29 -0.27 6.22 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 37 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 2.00 6.07 -51.93 -0.32 1.69 16 41 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 348.38 15.07 5.25 5.25 Total: -1.00 -27.94 348.38 -9.71 -37.64 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.08 Total: 2.84 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -0.14 Total: -16.98 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.22 Total: -44.05 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.49 Total: -0.76 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.94 -9.71 -37.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459730430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.414 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds