Wall clock time and date at job start Tue Mar 31 2020 06:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50698 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.33639 * 122.75261 * 124.73143 * 4 3 2 6 6 S 1.76202 * 107.92378 * 179.97438 * 5 4 3 7 7 C 1.70977 * 90.28287 * 0.27282 * 6 5 4 8 8 C 1.50702 * 124.91464 * 179.83805 * 7 6 5 9 9 N 1.46895 * 109.47375 * 270.00032 * 8 7 6 10 10 C 1.46898 * 111.00224 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47192 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47202 * 300.00421 * 11 10 9 13 13 C 1.52997 * 109.46852 * 60.00542 * 11 10 9 14 14 C 1.50700 * 109.47008 * 180.02562 * 11 10 9 15 15 H 1.08008 * 120.00179 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00133 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99883 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 120.00310 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47089 * 60.00106 * 18 16 14 20 20 H 1.48500 * 109.47021 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46832 * 300.00314 * 18 16 14 22 22 N 1.29030 * 110.16893 * 359.84192 * 7 6 5 23 23 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 27 27 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.08000 * 126.03771 * 0.03341 * 5 4 3 31 31 H 1.08994 * 109.46901 * 30.00579 * 8 7 6 32 32 H 1.09004 * 109.46861 * 150.00353 * 8 7 6 33 33 H 1.00900 * 110.99962 * 303.95548 * 9 8 7 34 34 H 1.09000 * 109.47079 * 300.00704 * 10 9 8 35 35 H 1.09004 * 109.46871 * 60.00146 * 10 9 8 36 36 H 1.08996 * 109.46971 * 60.00010 * 12 11 10 37 37 H 1.09001 * 109.46697 * 180.02562 * 12 11 10 38 38 H 1.08996 * 109.46882 * 299.99568 * 12 11 10 39 39 H 1.09005 * 109.47420 * 59.99762 * 13 11 10 40 40 H 1.09001 * 109.47077 * 179.97438 * 13 11 10 41 41 H 1.08996 * 109.47241 * 299.99941 * 13 11 10 42 42 H 0.97003 * 120.00227 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2696 2.0831 -0.9245 6 16 5.9731 1.8267 -0.5542 7 6 5.5442 0.8771 0.8014 8 6 6.5242 0.2188 1.7381 9 7 6.8407 -1.1291 1.2476 10 6 7.7960 -1.8024 2.1375 11 6 8.1000 -3.2005 1.5954 12 6 6.8058 -4.0137 1.5273 13 6 8.7033 -3.0840 0.1942 14 6 9.0795 -3.8914 2.5087 15 1 9.4480 -3.3843 3.3882 16 6 9.5052 -5.1710 2.2216 17 7 9.0569 -5.7883 1.1504 18 14 10.7188 -6.0278 3.3542 19 1 10.1319 -6.1415 4.7135 20 1 11.0149 -7.3842 2.8272 21 1 11.9749 -5.2383 3.4218 22 7 4.2602 0.8057 0.9063 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.8785 2.6572 -1.7514 31 1 7.4372 0.8123 1.7846 32 1 6.0849 0.1494 2.7333 33 1 6.0022 -1.6788 1.1343 34 1 8.7178 -1.2228 2.1863 35 1 7.3660 -1.8858 3.1357 36 1 6.0970 -3.5141 0.8670 37 1 7.0225 -5.0098 1.1415 38 1 6.3760 -4.0967 2.5256 39 1 9.6254 -2.5046 0.2426 40 1 8.9203 -4.0799 -0.1919 41 1 7.9946 -2.5843 -0.4662 42 1 9.3567 -6.6884 0.9482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459730430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:19 Heat of formation + Delta-G solvation = 7.404986 kcal Electronic energy + Delta-G solvation = -19821.260523 eV Core-core repulsion = 16926.667289 eV Total energy + Delta-G solvation = -2894.593234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.92288 -38.70268 -36.21681 -35.27758 -33.15122 -31.46431 -28.28040 -27.94716 -27.52051 -27.23159 -25.13320 -23.40412 -22.29858 -20.57699 -20.37427 -18.60045 -17.87742 -17.06292 -16.38948 -16.31515 -16.09209 -15.74179 -15.28420 -15.00858 -14.67224 -14.30132 -14.06408 -13.79588 -13.63811 -13.28419 -13.20141 -13.01414 -12.93355 -12.72367 -12.55704 -12.44487 -12.12832 -12.10257 -12.05487 -11.85300 -11.53940 -11.32275 -11.03669 -10.61635 -10.55836 -10.34528 -10.31870 -9.64544 -9.28173 -7.95677 -6.12895 -0.23623 0.49114 0.88086 1.45130 1.45567 1.52472 1.80849 2.47557 3.04846 3.26578 3.54345 3.89809 4.02236 4.18187 4.25047 4.36415 4.49615 4.52803 4.59093 4.62182 4.65066 4.81521 4.85868 4.89364 4.99361 5.01222 5.13880 5.16043 5.27502 5.33382 5.37806 5.42642 5.47279 5.52942 5.70383 5.76221 6.06545 6.18655 6.30294 6.42376 6.54303 6.84271 6.96062 7.54768 9.02463 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.003524 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.899818 B = 7944.553881 C = 8624.450642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.038 4.038 4 C 0.048 3.952 5 C -0.262 4.262 6 S 0.160 5.840 7 C 0.040 3.960 8 C 0.134 3.866 9 N -0.680 5.680 10 C 0.090 3.910 11 C 0.061 3.939 12 C -0.120 4.120 13 C -0.105 4.105 14 C -0.528 4.528 15 H 0.048 0.952 16 C 0.022 3.978 17 N -0.904 5.904 18 Si 0.946 3.054 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.274 1.274 22 N -0.493 5.493 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.205 0.795 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.339 0.661 34 H 0.061 0.939 35 H 0.014 0.986 36 H 0.027 0.973 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.048 0.952 41 H 0.031 0.969 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 16.829 -4.469 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.078 4.078 4 C -0.084 4.084 5 C -0.402 4.402 6 S 0.415 5.585 7 C -0.238 4.238 8 C 0.002 3.998 9 N -0.313 5.313 10 C -0.039 4.039 11 C 0.060 3.940 12 C -0.178 4.178 13 C -0.163 4.163 14 C -0.566 4.566 15 H 0.067 0.933 16 C -0.177 4.177 17 N -0.543 5.543 18 Si 0.772 3.228 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 N -0.210 5.210 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.222 0.778 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.415 16.894 -4.998 20.993 hybrid contribution -0.589 -1.115 1.422 1.901 sum -12.004 15.779 -3.575 20.146 Atomic orbital electron populations 1.21741 0.94008 1.02049 1.02571 1.21391 0.96816 0.95939 1.01293 1.20286 0.85368 0.98002 1.04099 1.20675 0.99059 0.97027 0.91667 1.27264 0.95058 1.10550 1.07297 1.83900 1.07169 1.44475 1.22980 1.26895 0.93679 1.02272 1.00907 1.20459 0.95262 0.90743 0.93339 1.60614 1.17515 1.02527 1.50597 1.21884 0.94243 0.95586 0.92184 1.18131 0.92714 0.89754 0.93380 1.21664 0.96704 1.02073 0.97378 1.21466 0.97359 0.99804 0.97674 1.21411 1.26069 0.99927 1.09224 0.93334 1.25548 0.97779 0.97965 0.96409 1.69967 1.44647 1.13154 1.26523 0.85817 0.79906 0.77631 0.79428 1.20120 1.21238 1.19969 1.66086 1.04979 1.21603 1.28297 0.92192 0.91335 0.92784 0.93074 0.93523 0.87921 0.90091 0.77840 0.87977 0.92862 0.84237 0.92086 0.96773 0.95426 0.92519 0.96494 0.96616 0.93343 0.95039 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.45 16 2 C -0.12 -2.31 5.83 30.60 0.18 -2.13 16 3 C -0.04 -0.67 5.71 29.85 0.17 -0.50 16 4 C 0.05 1.13 6.08 41.52 0.25 1.38 16 5 C -0.26 -5.24 11.07 66.78 0.74 -4.50 16 6 S 0.16 3.65 23.18 -56.49 -1.31 2.34 16 7 C 0.04 1.13 6.90 88.52 0.61 1.74 16 8 C 0.13 3.95 6.26 85.56 0.54 4.48 16 9 N -0.68 -24.11 5.70 -517.94 -2.95 -27.07 16 10 C 0.09 3.66 4.59 86.30 0.40 4.05 16 11 C 0.06 2.94 0.57 -52.93 -0.03 2.91 16 12 C -0.12 -5.80 7.92 71.98 0.57 -5.23 16 13 C -0.11 -5.14 8.09 71.98 0.58 -4.55 16 14 C -0.53 -28.39 8.01 25.60 0.21 -28.19 16 15 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 16 C 0.02 1.20 5.15 84.65 0.44 1.63 16 17 N -0.90 -50.71 9.35 21.45 0.20 -50.51 16 18 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 N -0.49 -14.37 10.34 -179.40 -1.86 -16.23 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 27 H 0.05 1.16 8.08 -2.39 -0.02 1.14 16 28 H 0.10 1.25 8.03 -2.39 -0.02 1.24 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.34 12.65 6.76 -89.69 -0.61 12.04 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.03 1.19 6.57 -2.39 -0.02 1.17 16 37 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.01 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.05 2.61 6.07 -2.39 -0.01 2.60 16 41 H 0.03 1.41 7.60 -2.39 -0.02 1.39 16 42 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -59.51 348.38 1.85 -57.66 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.38 Total: 18.83 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 5.36 Total: -30.36 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -4.61 Total: -93.80 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.31 Total: 2.34 kcal Total: -59.51 1.85 -57.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459730430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.063 kcal (2) G-P(sol) polarization free energy of solvation -59.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds