Wall clock time and date at job start Tue Mar 31 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47166 * 2 1 4 4 C 1.50704 * 109.47567 * 119.99724 * 2 1 3 5 5 C 1.33641 * 126.03603 * 120.00064 * 4 2 1 6 6 N 1.31783 * 114.49772 * 180.02562 * 5 4 2 7 7 C 1.29020 * 117.12561 * 359.97438 * 6 5 4 8 8 C 1.50700 * 124.91962 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47391 * 90.02354 * 8 7 6 10 10 C 1.46891 * 111.00314 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47413 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47173 * 300.00234 * 11 10 9 13 13 C 1.53001 * 109.46883 * 59.99906 * 11 10 9 14 14 C 1.50699 * 109.47673 * 179.97438 * 11 10 9 15 15 H 1.08002 * 119.99429 * 1.24917 * 14 11 10 16 16 C 1.37874 * 120.00288 * 181.23777 * 14 11 10 17 17 N 1.31513 * 119.99953 * 194.11414 * 16 14 11 18 18 Si 1.86801 * 119.99848 * 14.11894 * 16 14 11 19 19 H 1.48498 * 109.47378 * 84.52842 * 18 16 14 20 20 H 1.48503 * 109.46831 * 204.53126 * 18 16 14 21 21 H 1.48498 * 109.46833 * 324.52726 * 18 16 14 22 22 S 1.70978 * 110.16954 * 359.73129 * 7 6 5 23 23 H 1.08992 * 109.47207 * 299.99665 * 1 2 3 24 24 H 1.09008 * 109.46546 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46954 * 60.00387 * 1 2 3 26 26 H 1.09004 * 109.47612 * 240.00214 * 2 1 3 27 27 H 1.09004 * 109.46680 * 59.99643 * 3 2 1 28 28 H 1.08990 * 109.47260 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46953 * 300.00445 * 3 2 1 30 30 H 1.07997 * 122.75107 * 0.02562 * 5 4 2 31 31 H 1.08999 * 109.47835 * 210.02997 * 8 7 6 32 32 H 1.09006 * 109.46624 * 330.02692 * 8 7 6 33 33 H 1.00902 * 110.99770 * 303.96387 * 9 8 7 34 34 H 1.09002 * 109.47470 * 300.00286 * 10 9 8 35 35 H 1.09006 * 109.47100 * 60.00519 * 10 9 8 36 36 H 1.09006 * 109.47045 * 69.51155 * 12 11 10 37 37 H 1.08997 * 109.47136 * 189.51292 * 12 11 10 38 38 H 1.08997 * 109.46982 * 309.51618 * 12 11 10 39 39 H 1.08994 * 109.47041 * 60.00267 * 13 11 10 40 40 H 1.09008 * 109.47098 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47243 * 299.99758 * 13 11 10 42 42 H 0.97005 * 119.99518 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8040 -1.8014 1.2485 6 7 3.1098 -2.2346 2.4549 7 6 2.6396 -1.5694 3.4555 8 6 2.8785 -1.9071 4.9046 9 7 4.0867 -1.2168 5.3756 10 6 4.3518 -1.5237 6.7874 11 6 5.6143 -0.7880 7.2409 12 6 6.8020 -1.2402 6.3889 13 6 5.4130 0.7197 7.0758 14 6 5.8861 -1.1022 8.6895 15 1 5.2359 -1.7768 9.2268 16 6 6.9647 -0.5289 9.3287 17 7 7.3694 -1.0010 10.4876 18 14 7.8513 0.9186 8.5489 19 1 7.1446 2.1776 8.8966 20 1 9.2455 0.9770 9.0568 21 1 7.8685 0.7519 7.0734 22 16 1.7128 -0.2446 2.8995 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 3.1486 -2.2882 0.3482 31 1 2.0224 -1.5870 5.4984 32 1 3.0111 -2.9840 5.0096 33 1 4.8826 -1.4476 4.7999 34 1 3.5059 -1.2011 7.3945 35 1 4.4949 -2.5979 6.9051 36 1 6.6840 -0.8646 5.3724 37 1 7.7254 -0.8490 6.8159 38 1 6.8427 -2.3293 6.3712 39 1 4.5670 1.0419 7.6827 40 1 6.3127 1.2439 7.3984 41 1 5.2164 0.9475 6.0281 42 1 8.1281 -0.5974 10.9375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459737045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:47 Heat of formation + Delta-G solvation = 42.823702 kcal Electronic energy + Delta-G solvation = -19903.325563 eV Core-core repulsion = 17010.268199 eV Total energy + Delta-G solvation = -2893.057364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.80832 -37.36541 -36.06911 -34.14101 -31.64731 -29.75059 -27.50200 -27.07549 -26.18348 -25.10697 -24.24086 -22.83079 -21.65663 -19.49523 -18.79116 -17.79715 -16.16032 -15.91534 -15.45874 -15.10829 -14.82420 -14.48050 -14.17906 -13.86637 -13.56025 -13.10461 -12.90235 -12.76056 -12.61594 -12.53868 -12.02503 -11.94322 -11.84845 -11.78146 -11.65708 -11.56003 -10.99430 -10.93594 -10.30107 -10.09618 -10.01337 -9.85926 -9.58573 -9.22987 -8.97995 -8.83318 -8.54992 -8.35592 -7.99108 -6.07434 -4.03237 0.66586 1.32305 1.78610 2.79514 3.34083 3.43493 3.46862 4.09057 4.41476 4.45356 4.56059 4.78378 4.80944 5.03068 5.14443 5.25946 5.26972 5.33882 5.47255 5.48278 5.61605 5.66090 5.67494 5.87512 5.91448 5.95495 6.10787 6.14519 6.31071 6.48114 6.64191 6.67749 6.83461 6.94069 7.02344 7.34607 7.40211 7.56639 7.69388 7.77017 7.91756 8.55013 8.97066 9.58789 11.05901 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032844 B = 0.003528 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.313022 B = 7934.864440 C = 8253.937088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.016 4.016 3 C -0.148 4.148 4 C -0.229 4.229 5 C 0.035 3.965 6 N -0.475 5.475 7 C 0.058 3.942 8 C 0.131 3.869 9 N -0.684 5.684 10 C 0.084 3.916 11 C 0.042 3.958 12 C -0.144 4.144 13 C -0.135 4.135 14 C -0.513 4.513 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.888 3.112 19 H -0.287 1.287 20 H -0.308 1.308 21 H -0.248 1.248 22 S 0.148 5.852 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.169 0.831 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.344 0.656 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.054 0.946 38 H 0.040 0.960 39 H 0.045 0.955 40 H 0.030 0.970 41 H 0.042 0.958 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.164 2.355 -21.112 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.037 4.037 3 C -0.206 4.206 4 C -0.350 4.350 5 C -0.116 4.116 6 N -0.190 5.190 7 C -0.220 4.220 8 C -0.002 4.002 9 N -0.317 5.317 10 C -0.044 4.044 11 C 0.041 3.959 12 C -0.202 4.202 13 C -0.192 4.192 14 C -0.551 4.551 15 H 0.090 0.910 16 C -0.128 4.128 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.215 1.215 20 H -0.238 1.238 21 H -0.174 1.174 22 S 0.403 5.597 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.186 0.814 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.163 0.837 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.598 3.257 -20.166 24.540 hybrid contribution 1.256 -0.585 -1.065 1.748 sum -12.342 2.672 -21.232 24.704 Atomic orbital electron populations 1.21924 0.93997 1.02289 1.02268 1.19576 0.95796 0.95586 0.92724 1.21935 1.01701 0.94680 1.02270 1.26048 1.07935 1.02503 0.98553 1.21643 0.99152 0.95368 0.95487 1.66291 1.22935 1.31342 0.98417 1.27030 0.99522 0.95533 0.99878 1.20473 0.96397 0.97891 0.85425 1.60703 1.05259 1.60291 1.05481 1.22011 0.99510 0.97633 0.85210 1.18460 0.90191 0.91674 0.95625 1.22301 1.00589 0.99830 0.97458 1.22170 0.99389 0.98226 0.99430 1.20850 1.12296 1.28530 0.93409 0.91011 1.24973 0.96165 0.96889 0.94817 1.69968 1.26271 1.40241 1.16920 0.87258 0.77126 0.83257 0.80294 1.21474 1.23754 1.17423 1.83922 1.48611 1.29309 0.97855 0.92355 0.92284 0.91882 0.89381 0.92290 0.92128 0.91892 0.81383 0.89138 0.92378 0.83732 0.91452 0.95462 0.95480 0.92742 0.94097 0.93540 0.95145 0.93869 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.14 37.16 0.34 -0.66 16 2 C -0.02 -0.12 3.32 -91.77 -0.31 -0.43 16 3 C -0.15 -1.11 9.13 37.16 0.34 -0.77 16 4 C -0.23 -2.41 5.15 -35.92 -0.18 -2.60 16 5 C 0.03 0.41 11.22 -19.18 -0.22 0.20 16 6 N -0.48 -6.84 10.54 -11.86 -0.13 -6.97 16 7 C 0.06 0.80 6.90 -13.46 -0.09 0.71 16 8 C 0.13 1.85 6.26 -4.98 -0.03 1.82 16 9 N -0.68 -11.39 5.71 -115.06 -0.66 -12.04 16 10 C 0.08 1.63 4.57 -3.83 -0.02 1.61 16 11 C 0.04 0.94 0.57 -155.66 -0.09 0.86 16 12 C -0.14 -3.13 7.24 37.16 0.27 -2.86 16 13 C -0.14 -2.97 7.54 37.16 0.28 -2.69 16 14 C -0.51 -14.08 8.62 -34.44 -0.30 -14.38 16 15 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 16 C 0.07 2.10 5.32 -17.82 -0.09 2.01 16 17 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 18 Si 0.89 22.17 22.79 -169.99 -3.87 18.29 16 19 H -0.29 -7.14 7.10 56.52 0.40 -6.74 16 20 H -0.31 -7.84 7.11 56.52 0.40 -7.43 16 21 H -0.25 -5.78 4.65 56.52 0.26 -5.52 16 22 S 0.15 1.72 22.95 -107.50 -2.47 -0.75 16 23 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 24 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.06 0.47 8.06 -51.93 -0.42 0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.34 5.89 6.99 -39.29 -0.27 5.62 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.52 7.06 -51.93 -0.37 0.15 16 37 H 0.05 1.26 4.30 -51.93 -0.22 1.04 16 38 H 0.04 0.86 8.12 -51.93 -0.42 0.43 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.03 0.70 2.26 -51.92 -0.12 0.59 16 41 H 0.04 0.86 7.60 -51.93 -0.39 0.47 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -30.28 338.00 -8.33 -38.61 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.98 Total: 1.58 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -0.10 Total: -17.18 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.01 Total: -45.64 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -3.87 Total: 18.29 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.47 Total: -0.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.28 -8.33 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.435 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds